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2009

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Proteomic analysis of endodontic infections by liquid chromatography–tandem mass spectrometry, R. Nandakumar, Nandakumar Madayiputhiya, and A. F. Fouad

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Glucose Promotes Stress Resistance in the Fungal Pathogen Candida albicans, Alexandra Rodaki, Iryna M. Bohovych, Brice Enjalbert, Tim Young, Frank C. Odds, Neil A.R. Gow, and Alistair J.P. Brown

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Modulation of the Heme Electronic Structure and Cystathionine β-synthase Activity by Second Coordination Sphere Ligands: The Role of Heme Ligand Switching in Redox Regulation, Sangita Singh, Peter Madzelan, Jay Stasser, Colin L. Weeks, Donald Becker, Thomas G. Spiro, James Penner-Hahn, and Ruma Banerjee

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Genetic Code Supports Targeted Insertion of Two Amino Acids by One Codon, Anton Turanov, Alexei Lobanov, Dmitri E. Fomenko, Hilary Morrison, Mitchell Sogin, Lawrence Klobutcher, Dolph Hatfield, and Vadim N. Gladyshev

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Heme regulation of human cystathionine β-synthase activity: Insights from fluorescence and Raman spectroscopy, Colin L. Weeks, Sangita Singh, Peter Madzelan, Ruma Banerjee, and Thomas G. Spiro

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Copper transport into the secretory pathway is regulated by oxygen in macrophages, Carine White, Taiho Kambe, Yan G. Fulcher, Sherri W. Sachdev, Ashley I. Bush, Kevin Fritsche, Jaekwon Lee, Thomas P. Quinn, and Michael J. Petris

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A Role for the ATP7A Copper-transporting ATPase in Macrophage Bactericidal Activity, Carine White, Jaekwon Lee, Taiho Kambe, Kevin Fritsche, and Michael J. Petris

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Crystal structure of acivicin-inhibited γ-glutamyltranspeptidase reveals critical roles for its C-terminus in autoprocessing and catalysis, Kristin Williams, Sierra Cullati, Aaron Sand, Ekaterina I. Biterova, and Joseph J. Barycki

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Copper Transport Activity of Yeast Ctr1 Is Down-regulated via Its C Terminus in Response to Excess Copper, Xiaobin Wu, Devis Sinani, Heejeong Kim, and Jaekwon Lee

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The selenoproteome of Clostridium sp. OhILAs: Characterization of anaerobic bacterial selenoprotein methionine sulfoxide reductase A, Hwa Young, Yan Zhang, Byung Cheon Lee, Jae-Ryong Kim, and Vadim N. Gladyshev

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Hyaluronidase Activity of Human Hyal1 Requires Active Site Acidic and Tyrosine Residues, Ling Zhang, Alamelu G. Bharadwaj, Andrew Casper, Joel Barkley, Joseph J. Barycki, and Melanie A. Simpson

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Comparative Genomic Analyses of Nickel, Cobalt and Vitamin B12 Utilization, Yan Zhang, Dmitry Rodionov, Mikhail Gelfand, and Vadim N. Gladyshev

2008

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Expressional Control of a Cadmium-Transporting P1B-type ATPase by a Metal Sensing Degradation Signal, David J. Adle and Jaekwon Lee

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The very-long-chain hydroxy fatty acyl-CoA dehydratase PASTICCINO2 is essential and limiting for plant development, Liên Bach, Louise V. Michaelson, Richard Haslam, Yannick Bellec, Lionel Gissot, Jessica Marion, Marco Da Costa, Jean-Pierre Boutin, Martine Miquel, Frédérique Tellier, Frederic Domergue, Jonathan E. Markham, Frederic Beaudoin, Johnathan A. Napier, and Jean-Denis Faure

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The pyruvate, orthophosphate dikinase regulatory proteins of Arabidopsis possess a novel, unprecedented Ser/Thr protein kinase primary structure, Chris J. Chastain, Wenxin Xu, Kate Parsley, Gautam Sarath, Jullian Hebberd, and Raymond Chollet

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Sphingolipid Long-Chain Base Hydroxylation Is Important for Growth and Regulation of Sphingolipid Content and Composition in Arabidopsis, Ming Chen, Jonathan E. Markham, Charles R. Dietrich, Jan G. Jaworski, and Edgar B. Cahoon

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Functional Domains of the Fatty Acid Transport Proteins: Studies Using Protein Chimeras, Concetta C. DiRusso, Dina Darwis, Thomas Obermeyer, and Paul N. Black

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The Human Hyaluronan Receptor for Endocytosis (HARE/Stabilin-2) Is a Systemic Clearance Receptor for Heparin, Ed Harris, Janet A. Weigel, and Paul H. Weigel

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The ligand-binding profile of HARE: Hyaluronan and chondroitin sulfates A, C, and D bind to overlapping sites distinct from the sites for heparin, acetylated low-density lipoprotein, dermatan sulfate, and CS-E, Ed Harris and Paul H. Weigel

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Emergent decision-making in biological signal transduction networks, Tomáš Helikar, John Konvalina, Jack Heidel, and Jim A. Rogers

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Pet191 Is a Cytochrome c Oxidase Assembly Factor in Saccharomyces cerevisiae, Oleh Khalimonchuk, Kevin Rigby, Megan Bestwick, Fabien Pierrel, Paul A. Cobine, and Dennis R. Winge

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Function and redox state of mitochondrial localized cysteine-rich proteins important in the assembly of cytochrome c oxidase, Oleh Khalimonchuk and Dennis R. Winge

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The Hyaluronan Receptor for Endocytosis Mediates Hyaluronan-Dependent Signal Transduction via Extracellular Signal-Regulated Kinases, Svetlana V. Kyosseva, Ed Harris, and Paul H. Weigel

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Identification of a Consensus DNA-Binding Site for the Arabidopsis thaliana SBP Domain Transcription Factor, AtSPL14, and Binding Kinetics by Surface Plasmon Resonance, Xinwen Liang, Tara J. Nazarenus, and Julie M. Stone

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Reduced Reliance on the Trace Element Selenium During Evolution of Mammals, Alexey Lobanov, Dolph Hatfield, and Vadim N. Gladyshev

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Development of SRAP, SRAP-RGA, RAPD, and SCAR markers linked with a Fusarium wilt resistance gene in eggplant, Nedim Mutlu, Filiz Hatice Boyacı, Münevver Göçmen, and Kazım Abak

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The Cytoplasmic Domain of the Hyaluronan Receptor for Endocytosis (HARE) Contains Multiple Endocytic Motifs Targeting Coated Pit-mediated Internalization, Madhu S. Pandey, Ed Harris, Janet A. Weigel, and Paul H. Weigel

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Coa2 Is an Assembly Factor for Yeast Cytochrome c Oxidase Biogenesis That Facilitates the Maturation of Cox1, Fabien Pierrel, Oleh Khalimonchuk, Paul A. Cobine, Megan Bestwick, and Dennis R. Winge

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Comparative Genomic Analyses of Copper Transporters and Cuproproteomes Reveal Evolutionary Dynamics of Copper Utilization and Its Link to Oxygen, Perry Ridge, Yan Zhang, and Vadim N. Gladyshev

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Mapping the Functional Interaction of Sco1 and Cox2 in Cytochrome Oxidase Biogenesis, Kevin Rigby, Paul A. Cobine, Oleh Khalimonchuk, and Dennis R. Winge

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Plant-like Substitutions in the Large-Subunit Carboxy Terminus of Chlamydomonas Rubisco Increase CO2/O2 Specificity, Sriram Satagopan and Robert Spreitzer

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Loss of housekeeping selenoprotein expression in mouse liver modulates lipoprotein metabolism, Aniruddha Sengupta, Bradley A. Carlson, Victoria J. Hoffmann, Vadim N. Gladyshev, and Dolph L. Hatfield

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Purification from human milk of matriptase complexes with secreted serpins: mechanism for inhibition of matriptase other than HAI-1, I-Chu Tseng, Feng-Pai Chou, Sheng-Feng Su, Michael Oberst, Nandakumar Madayiputhiya, Ming-Shyue Lee, Jehng-Kang Wang, David E. Sloane, Michael Johnson, and Chen-Yong Lin

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An Inositolphosphorylceramide Synthase Is Involved in Regulation of Plant Programmed Cell Death Associated with Defense in Arabidopsis, Wenming Wang, Xiaohua Yang, Samantha Tangchiaburana, Roland Ndeh, Jonathan E. Markham, Yoseph Tsegaye, Teresa M. Dunn, Guo-Liang Wang, Maria Bellizzi, James F. Parsons, Danielle Morrissey, Janis E. Bravo, Daniel V. Lynch, and Shunyuan Xiao

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Comparative Metabolite Profiling of Carboxylic Acids in Rat Urine by CE-ESI MS/MS through Positively Pre-charged and 2H-coded Derivatization, Wen-Chu Yang, Fred E. Regnier, and Jiri Adamec

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Stable Isotope-Coded Quaternization for Comparative Quantification of Estrogen Metabolites by High-Performance Liquid Chromatography-Electrospray Ionization Mass Spectrometry, Wen-Chu Yang, Fred E. Regnier, Dan Silva, and Jiri Adamec

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Molybdoproteomes and evolution of molybdenum utilization, Yan Zhang and Vadim N. Gladyshev

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In silico Identification of Genes Involved in Selenium Metabolism: Evidence for a Third Selenium Utilization Trait, Yan Zhang, Anton Turanov, Dolph Hatfield, and Vadim N. Gladyshev

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Structural Basis of the Transcriptional Regulation of the Proline Utilization Regulon by Multifunctional PutA, Yuzhen Zhou, John D. Larson, Christopher A. Bottoms, Emilia C. Arturo, Michael T. Henzl, Jermaine L. Jenkins, Jay C. Nix, Donald F. Becker, and John J. Tanner

2007

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A Cadmium-transporting PIB-type ATPase in Yeast Saccharomyces cerevisiae, David J. Adle, Devis Sinani, Heejeong Kim, and Jaekwon Lee

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Crystal Structure of Formate Dehydrogenase H: Catalysis Involving Mo, Molybdopterin, Selenocysteine, and an Fe4S4 Cluster, Jeffrey C. Boyington, Vadim Gladyshev, Sergei V. Khangulov, Thressa C. Stadtman, and Peter D. Sun

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SELECTIVE RESTORATION OF THE SELENOPROTEIN POPULATION IN A MOUSE HEPATOCYTE SELENOPROTEINLESS BACKGROUND WITH DIFFERENT MUTANT SELENOCYSTEINE tRNAs LACKING, Bradley A. Carlson, Mohamed E. Moustafa, Aniruddha Sengupta, Ulrich Schweizer, Rajeev Shrimali, Mahadev Rao, Nianxin Zhong, Shulin Wang, Lionel Feigenbaum, Byeong Jae Lee, Vadim N. Gladyshev, and Dolph L. Hatfield

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High-Throughput Identification of Catalytic Redox-Active Cysteine Residues, Dmitri E. Fomenko, Weibing Xing, Blakely M. Adair, David J. Thomas, and Vadim Gladyshev

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Supporting Online Material for “High-Throughput Identification of Catalytic Redox-Active Cysteine Residues”, Dmitri E. Fomenko, Weibing Xing, Blakely M. Adair, David J. Thomas, and Vadim Gladyshev

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Novel metabolism in Chlamydomonas through the lens of genomics, Arthur R. Grossman, Martin Croft, Vadim N. Gladyshev, Sebeeha S. Merchant, Matthew C. Posewitz, Simon Prochnik, and Martin H. Spalding

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Expression, Processing, and Glycosaminoglycan Binding Activity of the Recombinant Human 315-kDa Hyaluronic Acid Receptor for Endocytosis (HARE), Ed Harris, Svetlana V. Kyosseva, Janet A. Weigel, and Paul H. Weigel

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Lipidomic Analysis of Glioblastoma Multiforme Using Mass Spectrometry, Soo Jung Ha, Gordon Showalter, Shanbao Cai, Haiyan Wang, Wei Michael Liu, Aaron Cohen-Gadol, Jann N. Sarkaria, Jenna Rickus, John Springer, Jiri Adamec, Karen E. Pollok, and Kari L. Clase

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Evidence for a Pro-oxidant Intermediate in the Assembly of Cytochrome Oxidase, Oleh Khalimonchuk, Amanda Bird, and Dennis R. Winge

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Arabidopsis thaliana GH3.9 influences primary root growth, Sadaf Khan and Julie M. Stone

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A systematic approach to the development of fluorescent contrast agents for optical imaging of mouse cancer models, Joy L. Kovar, Melanie A. Simpson, Amy Schutz-Geschwender , and D. Michael Olive

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Purification method directly influences effectiveness of an epidermal growth factor-coupled targeting agent for noninvasive tumor detection in mice, Joy L. Kovar, William M. Volcheck, Jiyan Chen, and Melanie A. Simpson

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The Sep15 Protein Family: Roles in Disulfide Bond Formation and Quality Control in the Endoplasmic Reticulum, Vyacheslav M. Labunskyy, Dolph L. Hatfield, and Vadim N. Gladyshev

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Mechanistic Studies of the Long Chain Acyl-CoA Synthetase Faa1p from Saccharomyces cerevisiae, Hong Li, Elaina M. Melton, Steven Quackenbush, Concetta C. DiRusso, and Paul N. Black

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Evolutionary Dynamics of Eukaryotic Selenoproteomes: Large Selenoproteomes May Associate With Aquatic Life and Small with Terrestrial Life, Alexei Lobanov, Dmitri E. Fomenko, Yan Zhang, and Aniruddha Sengupta

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Evolutionary dynamics of eukaryotic selenoproteomes: large selenoproteomes may associate with aquatic life and small with terrestrial life, Alexey V. Lobanov, Dmitri E. Fomenko, Yan Zhang, Aniruddha Sengupta, Dolph L. Hatfield, and Vadim N. Gladyshev

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Selenoprotein H Is a Nucleolar Thioredoxin-like Protein with a Unique Expression Pattern, Sergey V. Novoselov, Gregory V. Kryukov, Xue-Ming Xu, Bradley A. Carlson, Dolph L. Hatfield, and Vadim N. Gladyshev

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A highly efficient form of the selenocysteine insertion sequence element in protozoan parasites and its use in mammalian cells, Sergey V. Novoselov, Alexey V. Lobanov, Deame Hua, Marina V. Kasaikina, Dolph L. Hatfield, and Vadim Gladyshev

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Supporting Information for: A highly efficient form of the selenocysteine insertion sequence element in protozoan parasites and its use in mammalian cells, Sergey V. Novoselov, Alexey V. Lobanov, Deame Hua, Marina V. Kasaikina, Dolph L. Hatfield, and Vadim Gladyshev

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Coa1 links the Mss51 post-translational function to Cox1 cofactor insertion in cytochrome c oxidase assembly, Fabien Pierrel, Megan L. Bestwick, Paul A. Cobine, Oleh Khalimonchuk, Julia A. Cricco, and Dennis R. Winge

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NMR assignments of 1H, 13C and 15N spectra of methionine sulfoxide reductase B1 from Mus musculus, Lena S. Sal, Finn L. Aachmann, Hwa-Young Kim, Vadim N. Gladyshev, and Alexander Dikiy

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Identification and characterization of a selenoprotein family containing a diselenide bond in a redox motif, Valentina A. Shchedrina, Sergey V. Novoselov, Mikalai I. Malinouski, and Vadim N. Gladyshev

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Distinct Mechanisms for Ctr1-mediated Copper and Cisplatin Transport, Devis Sinani, David J. Adle, Heejeong Kim, and Jaekwon Lee

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Identification of Functional Subclasses in the DJ-1 Superfamily Proteins, Ying Wei, Dagmar Ringe, Mark A. Wilson, and Mary Jo Ondrechen

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Selenophosphate synthetase 2 is essential for selenoprotein biosynthesis, Xue-Ming Xu, Bradley A. Carlson, Robert Irons, Heiko Mix, Nianxin Zhong, Vadim Gladyshev, and Dolph L. Hatfield

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Biosynthesis of Selenocysteine on Its tRNA in Eukaryotes, Xue-Ming Xu, Bradley A. Carlson, Heiko Mix, Yan Zhang, Kazima Saira, Richard S. Glass, Marla J. Berry, Vadim Gladyshev, and Dolph L. Hatfield

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New Developments in Selenium Biochemistry: Selenocysteine Biosynthesis in Eukaryotes and Archaea, Xue-Ming Xu, Bradley A. Carlson, Yan Zhang, Heiko Mix, Gregory V. Kryukov, Richard S. Glass, Marla J. Berry, Vadim N. Gladyshev, and Dolph L. Hatfield

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A new strategy for assessing selenoprotein function: siRNA knockdown/knock-in targeting the 3'-UTR, MIN-HYUK YOO, XUE-MING XU, ANTON A. TURANOV, BRADLEY A. CARLSON, VADIM N. GLADYSHEV, and DOLPH L. HATFIELD

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High content of proteins containing 21st and 22nd amino acids, selenocysteine and pyrrolysine, in a symbiotic deltaproteobacterium of gutless worm Olavius algarvensis, Yan Zhang and Vadim N. Gladyshev

2006

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Purification and Initial Biochemical Characterization of ATP:Cob(I)alamin Adenosyltransferase (EutT) Enzyme of Salmonella enterica, Nicole R. Baun and Jorge C. Escalante-Semerena

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Peroxidase-dependent apoplastic oxidative burst in Arabidopsis required for pathogen resistance, Laurence V. Bindschedler, Julia Dewdney, Kris A. Blee, Julie M. Stone, Tsuneaki Asai, Julia Plotnikov, Carine Denoux, Tezni Hayes, Chris Gerrish, Dewi R. Davies, Frederick M. Ausubel, and G. Paul Bolwell

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Mammalian and other eukaryotic selenocysteine tRNAs, Bradley A. Carlson, Xue-Ming Xu, Rajeev Shrimali, Aniruddha Sengupta, Min-Hyuk Yoo, Robert Irons, Nianxin Zhong, Dolph L. Hatfield, Byeong Jae Lee, Alexei V. Lobanov, and Vadim N. Gladyshev

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Mouse models for assessing the role of selenoproteins in health and development, Bradley A. Carlson, Xue-Ming Xu, Rajeev Shrimali, Aniruddha Sengupta, Min-Hyuk Yoo, Nianxin Zhong, Dolph L. Hatfield, Robert Irons, Cindy D. Davis, Byeong Jae Lee, Sergey V. Novoselov, and Vadim N. Gladyshev

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Lysine residues in N-terminal and C-terminal regions of human histone H2A are targets for biotinylation by biotinidase, Yap Ching Chew, Gabriela Camporeale, Nagarama Kothapalli, Gautam Sarath, and Janos Zempleni

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NMR Structures of the Selenoproteins Sep15 and SelM Reveal Redox Activity of a New Thioredoxin-like Family, Andrew D. Ferguson, Vyacheslav Labunskyy , Dmitri E. Fomenko, Demet Arac, Yogarany Chelliah, Carlos A. Amexcua, Josep Rizo, Vadim N. Gladyshev, and Johann Deisenhofer

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Selenoproteins and selenoproteomes, Vadim N. Gladyshev

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"Preface" to Selenium: Its Molecular Biology and Role in Human Health, Second Edition, Dolph L. Hatfield, Marla J. Berry, and Vadim N. Gladyshev

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A Characterization of Subterranean Termites in Nebraska Using Micro-Morphological and Molecular Techniques, Timothy J. Husen, Shripat T. Kamble, and Julie M. Stone

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Microsatellite Genotyping to Distinguish Colonies and IntraSpecies Genetic Variation in the Eastern Subterranean Termite, Reticulitermes flavipes (Isoptera: Rhinotermitidae), Timothy J. Husen, Shripat T. Kamble, and Julie M. Stone

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Sequential Processing of a Mitochondrial Tandem Protein: Insights into Protein Import in Schizosaccharomyces pombe, Oleh Khalimonchuk, Martin Ott, Soledad Funes, Kai Ostermann, Gerhard Rödel, and Johannes M. Herrmann

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Alternative first exon splicing regulates subcellular distribution of methionine sulfoxide reductases, Hwa-Young Kim and Vadim Gladyshev

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Selenium and methionine sulfoxide reduction, Hwa-Young Kim and Vadim N. Gladyshev

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Hyaluronidase Expression Induces Prostate Tumor Metastasis in an Orthotopic Mouse Model, Joy L. Kovar, Mark A. Johnson, William M. Volcheck, Jiyan Chen, and Melanie A. Simpson

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The 15-kDa selenoprotein (Sep15): functional analysis and role in cancer, Vyacheslav M. Labunskyy, Vadim N. Gladyshev, and Dolph L. Hatfield

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The Plasmodium selenoproteome, Alexey V. Lobanov, Cesar Delgado, Stefan Rahlfs, Sergey V. Novoselov, Gregory V. Kryukov, Stephan Gromer, Dolph L. Hatfield, Katja Becker, and Vadim Gladyshev

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Selenium metabolism in Trypanosoma: characterization of selenoproteomes and identification of a Kinetoplastida-specific selenoprotein, Alexey V. Lobanov, Stephan Gromer, Gustavo Salinas, and Vadim Gladyshev

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Is there a twenty third amino acid in the genetic code?, Alexey V. Lobanov, Gregory V. Kryukov, Dolph L. Hatfield, and Vadim Gladyshev

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SECIS elements in the coding regions of selenoprotein transcripts are functional in higher eukaryotes, Heiko Mix, Alexey V. Lobanov, and Vadim Gladyshev

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Supplementary Material for: SECIS elements in the coding regions of selenoprotein transcripts are functional in higher eukaryotes, Heiko Mix, Alexey V. Lobanov, and Vadim Gladyshev

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Identification and characterization of Fep15, a new selenocysteine-containing member of the Sep15 protein family, Sergey V. Novoselov, Deame Hua, A. V. Lobanov, and Vadim N. Gladyshev

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S-adenosylmethionine stabilizes cystathionine β-synthase and modulates redox capacity, Anna Prudova, Zachary Bauman, Aaron Braun, Victor Vitvitsky, Shelly C. Lu, and Ruma Banerjee

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Selenoproteins in parasites, Gustavo Salinas, Alexei V. Lobanov, and Vadim N. Gladyshev

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Evolution of selenocysteine decoding and the key role of selenophosphate synthetase in the pathway of selenium utilization, Gustavo Salinas, Héctor Romero, Xue-Ming Xu, Bradley A. Carlson, Dolph L. Hatfield, and Vadim N. Gladyshev

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Concurrent Expression of Hyaluronan Biosynthetic and Processing Enzymes Promotes Growth and Vascularization of Prostate Tumors in Mice, Melanie A. Simpson

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Characterization of Alternative Cytosolic Forms and Cellular Targets of Mouse Mitochondrial Thioredoxin Reductase, Anton A. Turanov, Dan Su, and Vadim N. Gladyshev

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Methods and Materials for Making and Using Transgenic Dicamba-Degrading Organisms, Donald P. Weeks, Xiao-Zhuo Wang, and Patricia L. Herman

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Thioredoxin Reductase 1 Deficiency Reverses Tumor Phenotype and Tumorigenicity of Lung Carcinoma Cells, Min-Hyuk Yoo, Xue-Ming Xu, Bradley A. Carlson, Vadim N. Gladyshev, and Dolph L. Hatfield

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An ascorbate-reducible cytochrome b561 is localized in macrophage lysosomes, De-liang Zhang, Dan Su, Alajos Berczi , Amy Vargas , and Han H. Asard

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Dynamic evolution of selenocysteine utilization in bacteria: a balance between selenoprotein loss and evolution of selenocysteine from redox active cysteine residues, Yan Zhang, Hector Romero, Gustavo Salinas, and Vadim Gladyshev

2005

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Computer-assisted Docking of Flavodoxin with the ATP:Co(I)rrinoid Adenosyltransferase (CobA) Enzyme Reveals Residues Critical for Protein-Protein Interactions but Not for Catalysis, Nicole R. Baun and Jorge C. Escalante-Semerena

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Crystal structures of oxidized and reduced mitochondrial thioredoxin reductase provide molecular details of the reaction mechanism, Ekaterina I. Biterova, Anton A. Turanov, Vadim N. Gladyshev, and Joseph J. Barycki