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<title>Vadim Gladyshev Publications</title>
<copyright>Copyright (c) 2013 University of Nebraska - Lincoln All rights reserved.</copyright>
<link>http://digitalcommons.unl.edu/biochemgladyshev</link>
<description>Recent documents in Vadim Gladyshev Publications</description>
<language>en-us</language>
<lastBuildDate>Thu, 24 Jan 2013 11:51:07 PST</lastBuildDate>
<ttl>3600</ttl>








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<title>Selenoproteins regulate macrophage invasiveness and extracellular matrix-related gene expression</title>
<link>http://digitalcommons.unl.edu/biochemgladyshev/111</link>
<guid isPermaLink="true">http://digitalcommons.unl.edu/biochemgladyshev/111</guid>
<pubDate>Fri, 28 May 2010 07:30:33 PDT</pubDate>
<description>
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	<p>Background: Selenium, a micronutrient whose deficiency in diet causes immune dysfunction and inflammatory disorders, is thought to exert its physiological effects mostly in the form of selenium-containing proteins (selenoproteins). Incorporation of selenium into the amino acid selenocysteine (Sec), and subsequently into selenoproteins is mediated by Sec tRNA<sup>[Ser]Sec</sup>.<br /> Results: To define macrophage-specific selenoprotein functions, we generated mice with the Sec tRNA<sup>[Ser]Sec</sup> gene specifically deleted in myeloid cells. These mutant mice were devoid of the "selenoproteome" in macrophages, yet exhibited largely normal inflammatory responses. However, selenoprotein deficiency led to aberrant expression of extracellular matrix-related genes, and diminished migration of macrophages in a protein gel matrix.<br /> Conclusion: Selenium status may affect immune defense and tissue homeostasis through its effect on selenoprotein expression and the trafficking of tissue macrophages.</p>

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<author>Bradley A. Carlson et al.</author>


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<title>Identification of Trace Element-Containing Proteins in Genomic Databases</title>
<link>http://digitalcommons.unl.edu/biochemgladyshev/110</link>
<guid isPermaLink="true">http://digitalcommons.unl.edu/biochemgladyshev/110</guid>
<pubDate>Fri, 22 Jan 2010 14:40:08 PST</pubDate>
<description>
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	<p>Development of bioinformatics tools provided researchers with the ability to identify full sets of trace element–containing proteins in organisms for which complete genomic sequences are available. Recently, independent bioinformatics methods were used to identify all, or almost all, genes encoding selenocysteine-containing proteins in human, mouse, and <i>Drosophila</i> genomes, characterizing entire selenoproteomes in these organisms. It also should be possible to search for entire sets of other trace element–associated proteins, such as metal-containing proteins, although methods for their identification are still in development.</p>

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<author>Vadim N. Gladyshev et al.</author>


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<title>Overexpression of Methionine-&lt;i&gt;R&lt;/i&gt;-Sulfoxide Reductases has No iInfluence on Fruit Fly Aging</title>
<link>http://digitalcommons.unl.edu/biochemgladyshev/109</link>
<guid isPermaLink="true">http://digitalcommons.unl.edu/biochemgladyshev/109</guid>
<pubDate>Tue, 28 Jul 2009 12:07:04 PDT</pubDate>
<description>
	<![CDATA[
	<p>Methionine sulfoxide reductases (Msrs) are enzymes that repair oxidized methionine residues in proteins. This function implicated Msrs in antiox¬idant defense and the regulation of aging. There are two known Msr types in animals: MsrA specific for the reduction of methionine-S-sulfoxide, and MsrB that catalyzes the reduction of methionine-R-sulfoxide. In a previous study, overexpression of MsrA in the nervous system of <i>Drosophila</i> was found to extend lifespan by 70%. Overexpression of MsrA in yeast also extended lifespan, whereas MsrB overexpression did so only under cal¬orie restriction conditions. The effect of MsrB overexpression on lifespan has not yet been characterized in animal model systems. Here, the GAL4-UAS binary system was used to drive overexpression of cytosolic <i>Drosophila </i>MsrB and mitochondrial mouse MsrB2 in whole body, fatbody, and the nervous system of flies. In contrast to MsrA, MsrB overexpression had no consistent effect on the lifespan of fruit flies on either corn meal or sugar yeast diets. Physical activity, fecundity, and stress resistance were also similar in MsrB-overexpressing and control flies. Thus, MsrA and MsrB, the two proteins with similar function in antioxidant protein repair, have different effects on aging in fruit flies.</p>

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<author>Valentina A. Shchedrina et al.</author>


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<title>The Outcome of Selenium and Vitamin E Cancer Prevention Trial (SELECT) Reveals the Need for Better Understanding of Selenium Biology</title>
<link>http://digitalcommons.unl.edu/biochemgladyshev/108</link>
<guid isPermaLink="true">http://digitalcommons.unl.edu/biochemgladyshev/108</guid>
<pubDate>Tue, 07 Jul 2009 09:04:22 PDT</pubDate>
<description>
	<![CDATA[
	<p>The Selenium and Vitamin E Cancer Prevention Trial (SELECT) was one of the largest human cancer prevention trials ever undertaken. Designed to examine the role of selenium and vitamin E in preventing prostate cancer (I) as a double-blind study, SELECT administered daily 200 micrograms of selenium in the form of pure <sub>L</sub>-selenomethionine, 400 IU of synthetic <sub>D,L</sub>-α-tocopherol (vitamin E), a combination of these two components, or a placebo to four approximately equally divided groups. SELECT enrollment was undertaken between August 22, 2001 and June 24, 2004, and involved 35.533 healthy males from more than 425 participating locations in the United States, Puerto Rico, and Canada. The baseline ages of males selected were fifty years or older for African Americans, and fifty-five years or older for all others. No significant differences in prostate cancer incidence were observed in any of the groups; however, slight but statistically non-significant increases were observed in prostate cancer risk within the vitamin E group and in type 2 diabetes mellitus within the selenium group. Therefore, although SELECT was planned to include a twelve year intervention period, intervention was discontinued after a median period of 5.46 years (2).</p>

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<author>Dolph Hatfield et al.</author>


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<title>Trends in Selenium Utilization in Marine Microbial World Revealed through the Analysis of the Global Ocean Sampling (GOS) Project</title>
<link>http://digitalcommons.unl.edu/biochemgladyshev/107</link>
<guid isPermaLink="true">http://digitalcommons.unl.edu/biochemgladyshev/107</guid>
<pubDate>Tue, 07 Jul 2009 08:44:38 PDT</pubDate>
<description>
	<![CDATA[
	<p>Selenium is an important trace element that occurs in proteins in the form of selenocysteine (Sec) and in tRNAs in the form of selenouridine. Recent large-scale metagenomics projects provide an opportunity for understanding global trends in trace element utilization. Herein, we characterized the selenoproteome of the microbial marine community derived from the Global Ocean Sampling (GOS) expedition. More than 3,600 selenoprotein gene sequences belonging to 58 protein families were detected, including sequences representing 7 newly identified selenoprotein families, such as homologs of ferredoxin– thioredoxin reductase and serine protease. In addition, a new eukaryotic selenoprotein family, thiol reductase GILT, was identified. Most GOS selenoprotein families originated from Cys-containing thiol oxidoreductases. In both Pacific and Atlantic microbial communities, SelW-like and SelD were the most widespread selenoproteins. Geographic location had little influence on Sec utilization as measured by selenoprotein variety and the number of selenoprotein genes detected; however, both higher temperature and marine (as opposed to freshwater and other aquatic) environment were associated with increased use of this amino acid. Selenoproteins were also detected with preference for either environment. We identified novel fusion forms of several selenoproteins that highlight redox activities of these proteins. Almost half of Cys-containing SelDs were fused with NADH dehydrogenase, whereas such SelD forms were rare in terrestrial organisms. The selenouridine utilization trait was also analyzed and showed an independent evolutionary relationship with Sec utilization. Overall, our study provides insights into global trends in microbial selenium utilization in marine environments.</p>

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<author>Yan Zhang et al.</author>


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<title>Selenoproteinless Animals: Selenophosphate Synthetase SPS1 Functions in a Pathway Unrelated to Selenocysteine Biosynthesis</title>
<link>http://digitalcommons.unl.edu/biochemgladyshev/106</link>
<guid isPermaLink="true">http://digitalcommons.unl.edu/biochemgladyshev/106</guid>
<pubDate>Tue, 07 Jul 2009 08:44:36 PDT</pubDate>
<description>
	<![CDATA[
	<p>Proteins containing the 21st amino acid, selenocysteine (Sec), have been described in all three domains of life, but the composition of selenoproteomes in organisms varies significantly. Here, we report that aquatic arthropods possess many selenoproteins also detected in other animals and unicellular eukaryotes, and that most of these proteins were either lost or replaced with cysteine-containing homologs in insects. As a result of this selective selenoproteome reduction, fruit flies and mosquitoes have three known selenoproteins, and the honeybee, <i>Apis mellifera</i>, a single detected candidate selenoprotein. Moreover, we identified the red flour beetle, <i>Tribolium castaneum</i>, and the silkworm, <i>Bombyx mori</i>, as the first animals that lack any Sec-containing proteins. These insects also lost the Sec biosynthesis and insertion machinery, but selenophosphate synthetase 1 (SPS1), an enzyme previously implicated in Sec biosynthesis, is present in all insects, including <i>T. castaneum</i> and <i>B. mori</i>. These data indicate that SPS1 functions in a pathway unrelated to selenoprotein synthesis. Since SPS1 evolved from a protein that utilizes selenium for Sec biosynthesis, an attractive possibility is that SPS1 may define a new pathway of selenium utilization in animals.</p>

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<author>Alexey V. Lobanov et al.</author>


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<title>The &lt;i&gt;Chlamydomonas&lt;/i&gt; Genome Reveals the Evolution of Key Animal and Plant Functions</title>
<link>http://digitalcommons.unl.edu/biochemgladyshev/105</link>
<guid isPermaLink="true">http://digitalcommons.unl.edu/biochemgladyshev/105</guid>
<pubDate>Tue, 07 Jul 2009 08:44:34 PDT</pubDate>
<description>
	<![CDATA[
	<p><i>Chlamydomonas reinhardtii </i>is a unicellular green alga whose lineage diverged from land plants over 1 billion years ago. It is a model system for studying chloroplast-based photosynthesis, as well as the structure, assembly, and function of eukaryotic flagella (cilia), which were inherited from the common ancestor of plants and animals, but lost in land plants. We sequenced the ~120-megabase nuclear genome of <i>Chlamydomonas</i> and performed comparative phylogenomic analyses, identifying genes encoding uncharacterized proteins that are likely associated with the function and biogenesis of chloroplasts or eukaryotic flagella. Analyses of the <i>Chlamydomonas</i> genome advance our understanding of the ancestral eukaryotic cell, reveal previously unknown genes associated with photosynthetic and flagellar functions, and establish links between ciliopathy and the composition and function of flagella.</p>

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<author>Sabeeha S. Merchant et al.</author>


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<title>Identification of a Novel System for Boron Transport: Atr1 Is a Main Boron Exporter in Yeast</title>
<link>http://digitalcommons.unl.edu/biochemgladyshev/104</link>
<guid isPermaLink="true">http://digitalcommons.unl.edu/biochemgladyshev/104</guid>
<pubDate>Tue, 07 Jul 2009 08:19:40 PDT</pubDate>
<description>
	<![CDATA[
	<p>Boron is a micronutrient in plants and animals, but its specific roles in cellular processes are not known. To understand boron transport and functions, we screened a yeast genomic DNA library for genes that confer resistance to the element in <i>Saccharomyces cerevisiae</i>. Thirty boron-resistant transformants were isolated, and they all contained the <i>ATR1</i> (YML116w) gene. Atr1 is a multidrug resistance transport protein belonging to the major facilitator superfamily. C-terminal green fluorescent protein-tagged Atr1 localized to the cell membrane and vacuole, and <i>ATR1</i> gene expression was upregulated by boron and several stress conditions. We found that <i>atr1</i>Δ mutants were highly sensitive to boron treatment, whereas cells overexpressing <i>ATR1</i> were boron resistant. In addition, <i>atr1</i>Δ cells accumulated boron, whereas <i>ATR1</i>-overexpressing cells had low intracellular levels of the element. Furthermore, <i>atr1</i>Δ cells showed stronger boron-dependent phenotypes than mutants deficient in genes previously reported to be implicated in boron metabolism. <i>ATR1</i> is widely distributed in bacteria, archaea, and lower eukaryotes. Our data suggest that Atr1 functions as a boron efflux pump and is required for boron tolerance.</p>

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<author>Alaattin Kaya et al.</author>


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<title>Functional Characterization of Alternatively Spliced Human &lt;i&gt;SECISBP2&lt;/i&gt; Transcript Variants</title>
<link>http://digitalcommons.unl.edu/biochemgladyshev/103</link>
<guid isPermaLink="true">http://digitalcommons.unl.edu/biochemgladyshev/103</guid>
<pubDate>Tue, 07 Jul 2009 08:19:39 PDT</pubDate>
<description>
	<![CDATA[
	<p>Synthesis of selenoproteins depends on decoding of the UGA stop codon as the amino acid selenocysteine (Sec). This process requires the presence of a Sec insertion sequence element (SECIS) in the 3’-untranslated region of selenoprotein mRNAs and its interaction with the SECIS binding protein 2 (SBP2). In humans, mutations in the SBP2-encoding gene Sec insertion sequence binding protein 2 (<i>SECISBP2</i>) that alter the amino acid sequence or cause splicing defects lead to abnormal thyroid hormone metabolism. Herein, we present the first in silico and in vivo functional characterization of alternative splicing of SECISBP2. We report a complex splicing pattern in the 5’-region of human SECISBP2, wherein at least eight splice variants encode five isoforms with varying N-terminal sequence. One of the isoforms, mtSBP2, contains a mitochondrial targeting sequence and localizes to mitochondria. Using a minigene-based in vivo splicing assay we characterized the splicing efficiency of several alternative transcripts, and show that the splicing event that creates mtSBP2 can be modulated by antisense oligonucleotides. Moreover, we show that full-length SBP2 and some alternatively spliced variants are subject to a coordinated transcriptional and translational regulation in response to ultraviolet type A irradiation-induced stress. Overall, our data broadens the functional scope of a housekeeping protein essential to selenium metabolism.</p>

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<author>Laura V. Papp et al.</author>


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<title>SelenoDB 1.0 : A Database of Selenoprotein Genes, Proteins and SECIS Elements</title>
<link>http://digitalcommons.unl.edu/biochemgladyshev/102</link>
<guid isPermaLink="true">http://digitalcommons.unl.edu/biochemgladyshev/102</guid>
<pubDate>Tue, 07 Jul 2009 08:19:37 PDT</pubDate>
<description>
	<![CDATA[
	<p>Selenoproteins are a diverse group of proteins usually misidentified and misannotated in sequence databases. The presence of an in-frame UGA (stop) codon in the coding sequence of selenoprotein genes precludes their identification and correct annotation. The in-frame UGA codons are recoded to cotranslationally incorporate selenocysteine, a rare selenium-containing amino acid. The development of ad hoc experimental and, more recently, computational approaches have allowed the efficient identification and characterization of the selenoproteomes of a growing number of species. Today, dozens of selenoprotein families have been described and more are being discovered in recently sequenced species, but the correct genomic annotation is not available for the majority of these genes. SelenoDB is a long-term project that aims to provide, through the collaborative effort of experimental and computational researchers, automatic and manually curated annotations of selenoprotein genes, proteins and SECIS elements. Version 1.0 of the database includes an initial set of eukaryotic genomic annotations, with special emphasis on the human selenoproteome, for immediate inspection by selenium researchers or incorporation into more general databases. SelenoDB is freely available at http://www.selenodb.org.</p>

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<author>Sergi Castellano et al.</author>


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<title>Targeting Thioredoxin Reductase 1 Reduction in Cancer Cells Inhibits Self-Sufficient Growth and DNA Replication</title>
<link>http://digitalcommons.unl.edu/biochemgladyshev/101</link>
<guid isPermaLink="true">http://digitalcommons.unl.edu/biochemgladyshev/101</guid>
<pubDate>Tue, 07 Jul 2009 08:19:36 PDT</pubDate>
<description>
	<![CDATA[
	<p>Thioredoxin reductase 1 (TR1) is a major redox regulator in mammalian cells. As an important antioxidant selenoprotein, TR1 is thought to participate in cancer prevention, but is also known to be over-expressed in many cancer cells. Numerous cancer drugs inhibit TR1, and this protein has been proposed as a target for cancer therapy. We previously reported that reduction of TR1 levels in cancer cells reversed many malignant characteristics suggesting that deficiency in TR1 function is antitumorigenic. The molecular basis for TR1’s role in cancer development, however, is not understood. Herein, we found that, among selenoproteins, TR1 is uniquely overexpressed in cancer cells and its knockdown in a mouse cancer cell line driven by oncogenic <i>k-ras</i> resulted in morphological changes characteristic of parental (normal) cells, without significant effect on cell growth under normal growth conditions. When grown in serum-deficient medium, TR1 deficient cancer cells lose self-sufficiency of growth, manifest a defective progression in their S phase and a decreased expression of DNA polymerase a, an enzyme important in DNA replication. These observations provide evidence that TR1 is critical for self-sufficiency in growth signals of malignant cells, that TR1 acts largely as a pro-cancer protein and it is indeed a primary target in cancer therapy.</p>

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<author>Min-Hyuk Yoo et al.</author>


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<title>A Structure-Based Approach for Detection of Thiol Oxidoreductases and Their Catalytic Redox-Active Cysteine Residues</title>
<link>http://digitalcommons.unl.edu/biochemgladyshev/100</link>
<guid isPermaLink="true">http://digitalcommons.unl.edu/biochemgladyshev/100</guid>
<pubDate>Tue, 07 Jul 2009 08:19:35 PDT</pubDate>
<description>
	<![CDATA[
	<p>Cysteine (Cys) residues often play critical roles in proteins, for example, in the formation of structural disulfide bonds, metal binding, targeting proteins to the membranes, and various catalytic functions. However, the structural determinants for various Cys functions are not clear. Thiol oxidoreductases, which are enzymes containing catalytic redox-active Cys residues, have been extensively studied, but even for these proteins there is little understanding of what distinguishes their catalytic redox Cys from other Cys functions. Herein, we characterized thiol oxidoreductases at a structural level and developed an algorithm that can recognize these enzymes by (i) analyzing amino acid and secondary structure composition of the active site and its similarity to known active sites containing redox Cys and (ii) calculating accessibility, active site location, and reactivity of Cys. For proteins with known or modeled structures, this method can identify proteins with catalytic Cys residues and distinguish thiol oxidoreductases from the enzymes containing other catalytic Cys types. Furthermore, by applying this procedure to Saccharomyces cerevisiae proteins containing conserved Cys, we could identify the majority of known yeast thiol oxidoreductases. This study provides insights into the structural properties of catalytic redox-active Cys and should further help to recognize thiol oxidoreductases in protein sequence and structure databases.</p>

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<author>Stefano M. Marino et al.</author>


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<title>&lt;i&gt;MsrB1&lt;/i&gt; (Methionine-&lt;i&gt;R-&lt;/i&gt;sulfoxide Reductase 1) Knock-out Mice: Roles of MsrB1 in Redox Regulation and Identification of a Novel Selenoprotein Form</title>
<link>http://digitalcommons.unl.edu/biochemgladyshev/99</link>
<guid isPermaLink="true">http://digitalcommons.unl.edu/biochemgladyshev/99</guid>
<pubDate>Tue, 07 Jul 2009 07:53:25 PDT</pubDate>
<description>
	<![CDATA[
	<p>Protein oxidation has been linked to accelerated aging and is a contributing factor to many diseases. Methionine residues are particularly susceptible to oxidation, but the resulting mixture of methionine  <i>R</i>-sulfoxide (Met-RO) and methionine <i>S</i>-sulfoxide (Met-SO) can be repaired by thioredoxin-dependent enzymes MsrB and MsrA, respectively. Here, we describe a knock-out mouse deficient in selenoprotein MsrB1, the main mammalian MsrB located in the cytosol and nucleus. In these mice, in addition to the deletion of 14-kDa MsrB1, a 5-kDa selenoprotein form was specifically removed. Further studies revealed that the 5-kDa protein occurred in both mouse tissues and humanHEK293 cells; was down-regulated by <i>MsrB1</i> small interfering RNA, selenium deficiency, and selenocysteine tRNA mutations; and was immunoprecipitated and recognized by MsrB1 antibodies. Specific labeling with <sup>75</sup>Se and mass spectrometry analyses revealed that the 5-kDa selenoprotein corresponded to the C-terminal sequence of MsrB1. The <i>MsrB1</i> knock-out mice lacked both 5- and 14-kDa MsrB1 forms and showed reduced MsrB activity, with the strongest effect seen in liver and kidney. In addition, MsrA activity was decreased by MsrB1 deficiency. Liver and kidney of the <i>MsrB1</i> knock-out micealsoshowedincreasedlevelsofmalondialdehyde,proteincarbonyls, protein methionine sulfoxide, and oxidized glutathione as well as reduced levels of free and protein thiols, whereas these parameters were little changed in other organs examined. Overall, this study established an important contribution of MsrB1 to the redoxcontrolinmouseliverandkidneyandidentifiedanovelform of this protein.</p>

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<author>Dmitri E. Fomenko et al.</author>


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<title>Platyhelminth Mitochondrial and Cytosolic Redox Homeostasis Is Controlled by a Single Thioredoxin Glutathione Reductase and Dependent on Selenium and Glutathione</title>
<link>http://digitalcommons.unl.edu/biochemgladyshev/98</link>
<guid isPermaLink="true">http://digitalcommons.unl.edu/biochemgladyshev/98</guid>
<pubDate>Tue, 07 Jul 2009 07:46:29 PDT</pubDate>
<description>
	<![CDATA[
	<p>Platyhelminth parasites are a major health problem in developing countries. In contrast to their mammalian hosts, platyhelminth thiol-disulfide redox homeostasis relies on linked thioredoxin-glutathione systems, which are fully dependent on thioredoxin-glutathione reductase (TGR), a promising drug target. TGR is a homodimeric enzyme comprising a glutaredoxin domain and thioredoxin reductase (TR) domains with a C-terminal redox center containing selenocysteine (Sec). In this study, we demonstrate the existence of functional linked thioredoxin-glutathione systems in the cytosolic and mitochondrial compartments of <i>Echinococcus granulosus</i>, the platyhelminth responsible for hydatid disease. The glutathione reductase (GR) activity of TGR exhibited hysteretic behavior regulated by the [GSSG]/[GSH] ratio. This behavior was associated with glutathionylation by GSSG and abolished by deglutathionylation. The <i>K<sub>m</sub></i> and <i>k</i><sub>cat</sub> values for mitochondrial and cytosolic thioredoxins (9.5 μM and 131 s<sup>-1</sup>, 34 μM and 197 s<sup>-1</sup>, respectively) were higher than those reported for mammalian TRs. Analysis of TGR mutants revealed that the glutaredoxin domain is required for the GR activity but did not affect the TR activity. In contrast, both GR and TR activities were dependent on the Sec-containing redox center. The activity loss caused by the Sec-to-Cys mutation could be partially compensated by a Cys-to-Sec mutation of the neighboring residue, indicating that Sec can support catalysis at this alternative position. Consistent with the essential role of TGR in redox control, 2.5 μM auranofin, a known TGR inhibitor, killed larval worms in vitro. These studies establish the selenium- and glutathione-dependent regulation of cytosolic and mitochondrial redox homeostasis through a single TGR enzyme in platyhelminths.</p>

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<author>Mariana Bonilla et al.</author>


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<title>Selenoproteins Mediate T Cell Immunity through an Antioxidant Mechanism</title>
<link>http://digitalcommons.unl.edu/biochemgladyshev/97</link>
<guid isPermaLink="true">http://digitalcommons.unl.edu/biochemgladyshev/97</guid>
<pubDate>Tue, 07 Jul 2009 07:46:28 PDT</pubDate>
<description>
	<![CDATA[
	<p>Selenium is an essential dietary element with antioxidant roles in immune regulation, but there is little understanding of how this element acts at the molecular level in host defense and inflammatory disease. Selenium is incorporated into the amino acid selenocysteine (Sec), which in turn is inserted into selenoproteins in a manner dependent on Sec tRNA<sup>[Ser]Sec</sup>. To investigate the molecular mechanism that links selenium to T cell immunity, we generated mice with selenoprotein-less T cells by cell type-specific ablation of the Sec tRNA<sup>[Ser]Sec</sup> gene (<i>trsp</i>). Herein, we show that these mutant mice exhibit decreased pools of mature T cells and a defect in T cell-dependent antibody responses. We also demonstrate that selenoprotein deficiency leads to oxidant hyperproduction in T cells and thereby suppresses T cell proliferation in response to T cell receptor stimulation. These findings offer novel insights into immune function of selenium and physiological antioxidants.</p>

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<author>Rajeev K. Shrimali et al.</author>


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<title>Structure and Catalytic Mechanism of Eukaryotic Selenocysteine Synthase</title>
<link>http://digitalcommons.unl.edu/biochemgladyshev/96</link>
<guid isPermaLink="true">http://digitalcommons.unl.edu/biochemgladyshev/96</guid>
<pubDate>Tue, 07 Jul 2009 07:46:26 PDT</pubDate>
<description>
	<![CDATA[
	<p>In eukaryotes and Archaea, selenocysteine synthase (SecS) converts <i>O</i>-phospho-<sub>L</sub>-seryl-tRNA<sup>[Ser]Sec</sup> into selenocysteyltRNA<sup>[Ser]Sec</sup> using selenophosphate as the selenium donor compound. The molecular mechanisms underlying SecS activity are presently unknown. We have delineated a 450-residue core of mouse SecS, which retained full selenocysteyl-tRNA<sup>[Ser]Sec</sup> synthesis activity, and determined its crystal structure at 1.65Å resolution. SecS exhibits three domains that place it in the fold type I family of pyridoxal phosphate (PLP)-dependent enzymes. Two SecS monomers interact intimately and together build up two identical active sites around PLP in a Schiff-base linkage with lysine 284. Two SecS dimers further associate to form a homotetramer. The N terminus, which mediates tetramer formation, and a large insertion that remodels the active site set SecS aside from other members of the family. The active site insertion contributes to PLP binding and positions a glutamate next to the PLP, where it could repel substrates with a free α-carboxyl group, suggesting why SecS does not act on free <i>O</i>-phospho- <sub>L</sub>-serine. Upon soaking crystals in phosphate buffer, a previously disordered loop within the active site insertion contracted to form a phosphate binding site. Residues that are strictly conserved in SecS orthologs but variant in related enzymes coordinate the phosphate and upon mutation corrupt SecS activity. Modeling suggested that the phosphate loop accommodates the γ-phosphate moiety of <i>OL</sub>-seryltRNA<sup>[Ser]Sec</sup> and, after phosphate elimination, binds selenophosphate to initiate attack on the proposed aminoacrylyl-tRNA<sup>[Ser]Sec</sup> intermediate. Based on these results and on the activity profiles of mechanism-based inhibitors, we offer a detailed reaction mechanism for the enzyme.</p>

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<author>Oleg M. Ganichkin et al.</author>


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<title>Eukaryotic Selenoproteins and Selenoproteomes</title>
<link>http://digitalcommons.unl.edu/biochemgladyshev/95</link>
<guid isPermaLink="true">http://digitalcommons.unl.edu/biochemgladyshev/95</guid>
<pubDate>Tue, 07 Jul 2009 07:29:02 PDT</pubDate>
<description>
	<![CDATA[
	<p>Selenium is an essential trace element for which both beneficial and toxic effects in human health have been described. It is now clear that the importance of having adequate amounts of this micronutrient in the diet is primarily due to the fact that selenium is required for biosynthesis of selenocysteine, the twenty first naturally occurring amino acid in protein. In this review, we provide an overview of eukaryotic selenoproteins and selenoproteomes, which are sets of selenoproteins in these organisms. In eukaryotes, selenoproteins show a mosaic occurrence, with some organisms, such as vertebrates and algae, having dozens of these proteins, while other organisms, such as higher plants and fungi, having lost all selenoproteins during evolution. We also discuss selenoprotein functions and evolutionary trends in the use of these proteins in eukaryotes. Functional analysis of selenoproteins is critical for better understanding of the role of selenium in human health and disease.</p>

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<author>Alexey V. Lobanov et al.</author>


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<title>Functions and Evolution of Selenoprotein Methionine Sulfoxide Reductases</title>
<link>http://digitalcommons.unl.edu/biochemgladyshev/94</link>
<guid isPermaLink="true">http://digitalcommons.unl.edu/biochemgladyshev/94</guid>
<pubDate>Tue, 07 Jul 2009 07:29:00 PDT</pubDate>
<description>
	<![CDATA[
	<p>Methionine sulfoxide reductases (Msrs) are thiol-dependent enzymes which catalyze conversion of methionine sulfoxide to methionine. Three Msr families, MsrA, MsrB, and fRMsr, are known. MsrA and MsrB are responsible for the reduction of methionine-S-sulfoxide and methionine-R-sulfoxide residues in proteins, respectively, whereas fRMsr reduces free methionine-R-sulfoxide. Besides acting on proteins, MsrA can addi¬tionally reduce free methionine-S-sulfoxide. Some MsrAs and MsrBs evolved to utilize catalytic selenocysteine. This includes MsrB1, which is a major MsrB in cytosol and nucleus in mammalian cells. Specialized machinery is used for insertion of selenocysteine into MsrB1 and other seleno¬proteins at in-frame UGA codons. Selenocysteine offers catalytic advantage to the protein repair function of Msrs, but also makes these proteins dependent on the supply of selenium and requires adjustments in their strategies for regeneration of active enzymes. Msrs have roles in protecting cellular proteins from oxidative stress and through this function they may regulate lifespan in several model organisms.</p>

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</description>

<author>Byung Cheon Lee et al.</author>


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<item>
<title>Selenoproteins that Function in Cancer Prevention and Promotion</title>
<link>http://digitalcommons.unl.edu/biochemgladyshev/93</link>
<guid isPermaLink="true">http://digitalcommons.unl.edu/biochemgladyshev/93</guid>
<pubDate>Tue, 07 Jul 2009 07:28:58 PDT</pubDate>
<description>
	<![CDATA[
	<p>Of the many health benefits attributed to selenium, the one that has received the most attention is its role in cancer prevention. Selenium-containing proteins (selenoproteins) have been shown in recent years to have roles in cancer prevention. However, selenoproteins have diverse functions and their view as antioxidants is oversimplified. Some selenoproteins appear to have a split personality in having roles both in preventing and promoting cancer. The contrasting roles of one selenoprotein, thioredoxin reductase 1, in cancer are discussed in detail, but as also noted, at least one other selenoprotein may also have such a dual function. In addition, we discuss examples of inhibition of cancer development by selenoprotein deficiency in mouse models. These studies highlight the complex nature of selenium in relation to cancer.</p>

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</description>

<author>Dolph L. Hatfield et al.</author>


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<item>
<title>A Functional Link between Housekeeping Selenoproteins and Phase II Enzymes</title>
<link>http://digitalcommons.unl.edu/biochemgladyshev/92</link>
<guid isPermaLink="true">http://digitalcommons.unl.edu/biochemgladyshev/92</guid>
<pubDate>Tue, 07 Jul 2009 07:28:57 PDT</pubDate>
<description>
	<![CDATA[
	<p>Sec (selenocysteine) is biosynthesized on its tRNA and incorporated into selenium-containing proteins (selenoproteins) as the 21st amino acid residue. Selenoprotein synthesis is dependent on Sec tRNA and the expression of this class of proteins can be modulated by altering Sec tRNA expression. The gene encoding Sec tRNA (Trsp) is a single-copy gene and its targeted removal in liver demonstrated that selenoproteins are essential for proper function wherein their absence leads to necrosis and hepatocellular degeneration. In the present study, we found that the complete loss of selenoproteins in liver was compensated for by an enhanced expression of several phase II response genes and their corresponding gene products. The replacement of selenoprotein synthesis in mice carrying mutant Trsp transgenes, wherein housekeeping, but not stress-related selenoproteins are expressed, led to normal expression of phase II response genes. Thus the present study provides evidence for a functional link between housekeeping selenoproteins and phase II enzymes.</p>

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</description>

<author>Aniruddha Sengupta et al.</author>


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