2010
Analysis of miRNA Modifications, Bin Yu and Xuemei Chen
Differences in HIV Burden and Immune Activation within the Gut of HIV-Positive Patients Receiving Suppressive Antiretroviral Therapy, Steven A. Yukl, Sara Gianella, Elizabeth Sinclair, Lorrie Epling, Qingsheng Li, Lijie Duan, Alex L.M. Choi, Valerie Girling, Terence Ho, Peilin Li, Katsuya Fujimoto, Harry Lampiris, C. Bradley Hare, Mark Pandori, Ashley T. Haase, Huldrych F. Günthard, Marek Fischer, Amandeep K. Shergill, Kenneth McQuaid, Diane V. Havlir, and Joseph K. Wong
Microevolution of intermediary metabolism: evolutionary genetics meets metabolic biochemistry, Anthony J. Zera
Purification and characterization of cytoplasmic NADP+- isocitrate dehydrogenase, and amplification of the Nadp+-Idh gene from the wing-dimorphic sand field cricket, Gryllus firmus, Anthony J. Zera, Susan Newman, David Berkheim, Christine Black, Lindsay Klug, and Erica Crone
Molecular Determinants of HIV-1 Subtype C Coreceptor Transition from R5 to R5X4, Hong Zhang, Damien C. Tully, Tiejun Zhang, Hideaki Moriyama, Jesse Thompson, and Charles Wood
Dual Functions of Interferon Regulatory Factors 7C in Epstein-Barr Virus–Mediated Transformation of Human B Lymphocytes, Yong Zhao, Dongsheng Xu, Yanjun Jiang, and Luwen Zhang
2009
Interactive Effects of Time, CO2, N, and Diversity on Total Belowground Carbon Allocation and Ecosystem Carbon Storage in a Grassland Community, E. Carol Adair, Peter B. Reich, Sarah E. Hobbie, and Johannes M.H. Knops
Evolution and pleiotropy of TRITHORAX function in Arabidopsis, Zoya Avramova
Similar Patterns of Linkage Disequilibrium and Nucleotide Diversity in Native and Introduced Populations of the Pea Aphid, Acyrthosiphon pisum, Jennifer A. Brisson, Sergey V. Nuzhdin, and David L. Stern
BLOOD SAMPLING REDUCES ANNUAL SURVIVAL IN CLIFF SWALLOWS (PETROCHELIDON PYRRHONOTA) -- La Toma de Muestras de Sangre Reduce la Supervivencia Anual en Petrochelidon pyrrhonota, Charles R. Brown and Mary Bomberger Brown
Caenorhabditis elegans Genomic Response to Soil Bacteria Predicts Environment-Specific Genetic Effects on Life History Traits, Joseph D. Coolon, Kenneth L. Jones, Timothy C. Todd, Bryanua C. Carr, and Michael A. Herman
Role of vapBC toxin–antitoxin loci in the thermal stress response of Sulfolobus solfataricus, Charlotte R. Cooper, Amanda J. Daugherty, Sabrina Tachdjian, Paul H. Blum, and Robert M. Kelly
Arginine-Induced Germ Tube Formation in Candida albicans Is Essential for Escape from Murine Macrophage Line RAW 264.7, Suman Ghosh, Dhammika H. M. L. P. Navarathna, David D. Roberts, Jake T. Cooper, Audrey L. Atkin, Thomas M. Petro, and Kenneth W. Nickerson
The nuclear receptor NHR-25 cooperates with the Wnt/β-catenin asymmetry pathway to control differentiation of the T seam cell in C. elegans, Martina Hajduskova, Marek Jindra, Michael A. Herman, and Masako Asahina
Ecological Genomics of Nematode Community Interactions: Model and Non-model Approaches, Michael A. Herman, Joseph D. Coolon, Kenneth L. Jones, and Timothy Todd
Crystallization and crystal-packing studies of Chlorella virus deoxyuridine triphosphatase, Kohei Homma and Hideaki Moriyama
Plant Sex and the Evolution of Plant Defenses against Herbivores, Marc T.J. Johnson, Stacey DeWitt Smith, Marc D. Rausher, and Douglas J. Futuyma
Long 3’-UTRs target wild-type mRNAs for nonsense-mediated mRNA decay in Saccharomyces cerevisiae, Bessie W. Kebaara and Audrey L. Atkin
Species-driven changes in nitrogen cycling can provide a mechanism for plant invasions, Johannes M. H. Knops and Ramesh Laungani
Natural History Note No Trade-Off between Seed Size and Number in the Valley Oak Quercus lobata, Walter D. Koenig, Johannes M.H. Knops, William J. Carmen, and Richard D. Sage
The impact of co-occurring tree and grassland species on carbon sequestration and potential biofuel production, Ramesh Laungani and Johannes Knops
Parameterizing the growth-decline boundary for uncertain population projection models, Joan Lubben, Derek Boeckner, Richard Rebarber, Stuart Townley, and Brigitte Tenhumberg
Something Old, Something New, Something Borrowed; How the Thermoacidophilic Archaeon Sulfolobus solfataricus Responds to Oxidative Stress, Walid S. Maaty, Blake Wiedenheft, Pavel Tarlykov, Nathan Schaff, Joshua Heinemann, Jim Robinson-Cox, Jacob Valenzuela, Amanda Dougherty, Paul H. Blum, C. Martin Lawrence, Trevor Douglas, Mark J. Young, and Brian Bothner
Impacts of insect herbivory on cactus population dynamics: experimental demography across an environmental gradient, Tom E. X. Miller, Svata M. Louda, Karen A. Rose, and James O. Eckberg
Natural Genetic Variation in Transcriptome Reflects Network Structure Inferred with Major Effect Mutations: Insulin/TOR and Associated Phenotypes in Drosophila melanogaster, Sergey V. Nuzhdin, Jennifer A. Brisson, Andrew Pickering, Marta L. Wayne, Lawrence G. Harshman, and Lauren M. McIntyre
Transcriptional Profiling of the Sperm Storage Organs of Drosophila melanogaster, Adrianne M. Prokupek, Stephen D. Kachman, Istvan Ladunga, and Lawrence G. Harshman
Macroevolutionary Tests of Pollination Syndromes: A Reply to Fenster et al., Stacey DeWitt Smith, Cécile Ané, and David A. Baum
Computational Prediction of Novel Non-Coding RNAs in Arabidopsis thaliana, Dandan Song, Yang Yang, Bin Yu, Binglian Zheng, Zhidong Deng, Bao-Liang Lu, Xuemei Chen, and Tao Jiang
Gene Duplication and the Resolution of Adaptive Conflict, Jay F. Storz
Evolutionary and functional insights into the mechanism underlying high-altitude adaptation of deer mouse hemoglobin, Jay F. Storz, Amy M. Runck, Stephen J. Sabatino, John K. Kelly, Nuno Ferrand, Hideaki Moriyama, Roy E. Weber, and Angela Fago
Behavioral response of dissimilatory perchlorate-reducing bacteria to different electron acceptors, Yvonne Sun, Ruth L. Gustavson, Nadia Ali, Karrie A. Weber, Lacey L. Westphal, and John D. Coates
Occurrence of Trichosirocalus horridus (Coleoptera: Curculionidae) on Native Cirsium altissimum Versus Exotic C. vulgare in North American Tallgrass Prairie, Masaru Takahashi, Svata M. Louda, Tom E. X. Miller, and Charles W. O'Brien
Model complexity affects transient population dynamics following a dispersal event: A case study with pea aphids, Brigitte Tenhumberg, Andrew J. Tyre, and Richard Rebarber
Physiological and taxonomic description of the novel autotrophic, metal oxidizing bacterium, Pseudogulbenkiania sp. strain 2002, Karrie A. Weber, David B. Hedrick, Aaron D. Peacock, J. Cameron Thrash, David C. White, Laurie A. Achenbach, and John D. Coates
Wnt and EGF Pathways Act Together to Induce C. elegans Male Hook Development, Hui Yu, Adeline Seah, Michael A. Herman, Edwin L. Ferguson, H. Robert Horvitz, and Paul W. Sternberg
Sex effects on life span and senescence in the wild when dates of birth and death are unknown, Felix Zajitschek, Chad Brassil, Russell Bonduriansky, and Robert C. Brooks
2008
Tissue and stage-specific juvenile hormone esterase (JHE) and epoxide hydrolase (JHEH) enzyme activities and Jhe transcript abundance in lines of the cricket Gryllus assimilis artificially selected for plasma JHE activity: Implications for JHE microevolution, Anurag Anand, Erica Crone, and Anthony J. Zera
The Genome Sequence of the Metal-Mobilizing, Extremely Thermoacidophilic Archaeon Metallosphaera sedula Provides Insights into Bioleaching-Associated Metabolism, Kathryne S. Auernik, Yukari Maezato, Paul H. Blum, and Robert M. Kelly
Vulnerability of Rehabilitated Agricultural Production Systems to Invasion by Nontarget Plant Species, Sara G. Baer, David M. Engle, Johannes M.H. Knops, Kenneth A. Langeland, Bruce D. Maxwell, Fabian D. Menalled, and Amy J. Symstad
Review of Archaea: Molecular and Cellular Biology, Paul H. Blum
Pea Aphid, Jennifer A. Brisson and Gregory K. Davis
Rarity of Males in Pea Aphids Results in Mutational Decay, Jennifer A. Brisson and Sergey V. Nuzhdin
Evidence for contrasting modes of selection at interacting globin genes in the European rabbit (Oryctolagus cuniculus), R. Campos, Jay F. Storz, and N. Ferrand
NUCLEIC ACID SEQUENCES FOUND IN DROSOPHILA MELANOGASTER THAT ENCODE PROTEINS ESSENTIAL FOR VIABILITY AND METHOD OF USE: U.S. Patent No. US 7,384,745 B2, Alan C. Christensen and Douglas R. Dorer
Parasite-Mediated Disruptive Selection in a Natural Daphnia Population, Meghan Duffey, Chad Brassil, Spencer Hall, Alan Tessier, Carla Cáceres, and Jeffrey Conner
Molecular evolution of cytochrome b in high- and low-altitude deer mice (genus Peromyscus), E.J. Gering, J. C. Opazo, and Jay F. Storz
Regulation of Aromatic Alcohol Production in Candida albicans, Suman Ghosh, Bessie W. Kebaara, Audrey L. Atkin, and Kenneth W. Nickerson
Substrate-dependent signaling success in the wolf spider, Schizocosa retrorsa, Eileen Hebets, Damian O. Elias, Andrew C. Mason, Gary L. Miller, and Gail E. Stratton
Diet influences mate choice selectivity in adult female wolf spiders, Eileen Hebets, Jennifer Wesson, and Paul S. Shamble
Genetic Variation in Mother-Child Acute Seroconverter Pairs from Zambia, Federico G. Hoffmann, Xiang He, John T. West, Philippe Lemey, Chipepo Kankasa, and Charles Wood
Rapid Rates of Lineage-Specific Gene Duplication and Deletion in the α-Globin Gene Family, Federico G. Hoffmann, Juan C. Opazo, and Jay F. Storz
New Genes Originated via Multiple Recombinational Pathways in the β-Globin Gene Family of Rodents, Frederico Hoffmann, Juan Opazo, and Jay F. Storz
Grouse and Quails of North America — Frontmatter, Paul A. Johnsgard
Environmental Effects on the Expression of Life Span and Aging: An Extreme Contrast between Wild and Captive Cohorts of Telostylinus angusticollis (Diptera: Neriidae), Noriyoshi Kawasaki, Chad Brassil, Robert Brooks, and Russell Bonduriansky
Optimal Data Partitioning and a Test Case for Ray-Finned Fishes (Actinopterygii) Based on Ten Nuclear Loci, Chenhong Li, Guoqing Lu, and Guillermo Ortí
Management Recommendations Based on Matrix Projection Models: The Importance of Considering Biological Limits, Joan Lubben, Brigitte Tenhumberg, Andrew J. Tyre, and Richard Rebarber
Herbivore-Mediated Ecological Costs of Reproduction Shape the Life History of an Iteroparous Plant, Tom E. X. Miller, Brigitte Tenhumberg, and Svata M. Louda
The Spectrum of Mitochondrial Mutation Differs across Species, Kristi L. Montooth and David M. Rand
Genomic evidence for independent origins of β-like globin genes in monotremes and therian mammals, Juan C. Opazo, Federico G. Hoffmann, and Jay F. Storz
Differential loss of embryonic globin genes during the radiation of placental mammals, Juan C. Opazo, Federico Hoffmann, and Jay F. Storz
A 15-Myr-Old Genetic Bottleneck, Timothy Paape, Boris Igic, Stacey DeWitt Smith, Richard Olmstead, Lynn Bohs, and Joshua R. Kohn
ARABIDOPSIS TRITHORAX1 Dynamically Regulates FLOWERING LOCUS C Activation via Histone 3 Lysine 4 Trimethylation, Stephane Pien, Delphine Fleury, Joshua S. Mylne, Pedro Crevillen, Dirk Inze, Zoya Avramova, Caroline Dean, and Ueli Grossniklaus
An Evolutionary Expressed Sequence Tag Analysis of Drosophila Spermatheca Genes, Adrianne Prokupek, Federico G. Hoffmann, Seong-il Eyun, Etsuko N. Moriyama, Min Zhou, and Lawrence G. Harshman
Arabidopsis DRB4, AGO1, AGO7, and RDR6 participate in a DCL4-initiated antiviral RNA silencing pathway negatively regulated by DCL1, Feng Qu, Xiaohong Ye, and Thomas Jack Morris
Interspecific Demographic Trade-Offs and Soil-Related Habitat Associations of Tree Species along Resource Gradients, Sabrina E. Russo, Patrick Brown, Sylvester Tan, and Stuart J. Davies
Corrigendum (Russo et al. 2007): A Re-Analysis of Growth–Size Scaling Relationships of Woody Plant Species, Sabrina E. Russo, Susan K. Wiser, and David A. Coomes
Agonistic signals received by an arthropod filiform hair allude to the prevalence of near-field sound communication, Roger D. Santer and Eileen Hebets
Supplementary Material: Agonistic signals received by an arthropod filiform hair allude to the prevalence of near-field sound communication, Roger D. Santer and Eileen Hebets
The Role of Pollinator Shifts in the Floral Diversification of Iochroma (Solanaceae), Stacey DeWitt Smith, Cécile Ané, and David A. Baum
Comparative Pollination Biology of Sympatric and Allopatric Andean Iochroma (Solanaceae), Stacey DeWitt Smith, Steven J. Hall, Pablo R. Izquierdo, and David A. Baum
Polygyny and Female Breeding Failure Reduce Effective Population Size in the Lekking Gunnison Sage-Grouse, Julie R. Stiver, Anthony D. Apa, Thomas E. Remington, and Robert M. Gibson
Adaptive Functional Divergence among Triplicated α-Globin Genes in Rodents, Jay F. Storz, Federico G. Hoffmann, Juan C. Opazo, and Hideaki Moriyama
Effects of Spatially Varying Selection on Nucleotide Diversity and Linkage Disequilibrium: Insights From Deer Mouse Globin Genes, Jay F. Storz and John K. Kelly
Monte Carlo analysis of parameter uncertainty in matrix models for the weed Cirsium vulgare, Brigitte Tenhumberg, Svata M. Louda, James O. Eckberg, and Masaru Takahashi
Ecological Genomics: Understanding Gene and Genome Function in the Natural Environment, M. C. Ungerer, L. C. Johnson, and M. A. Herman
ENDOGENOUS AND EXOGENOUS CONTROL OF ECOSYSTEM FUNCTION: N CYCLING IN HEADWATER STREAMS, H. M. Valett, S. A. Thomas, P. J. Mulholland, J. R. Webster, C. N. Dahm, C. S. Fellows, C. L. Crenshaw, and C. G. Peterson
Analysis of Wnt Signaling during Caenorhabditis elegans Postembryonic Development, Samantha Van Hoffelen and Michael A. Herman
Evolution of SET-Domain Protein Families in the Unicellular and Multicellular Ascomycota Fungi, Chendhore Veerappan, Zoya Avramova, and Etsuko N. Moriyama
A novel ecological role of the Firmicutes identified in thermophilic microbial fuel cells, Kelly C. Wrighton, Peter Agbo, Falk Warnecke, Karrie A. Weber, Eoin L. Brodie, Todd Z. DeSantis, Philip Hugenholtz, Gary L. Andersen, and John D. Coates
2007
Origin of the Bacterial SET Domain Genes: Vertical or Horizontal?, Raul Alvarez-Venegas, Monther Sadder, Alexander Tikhonov, and Zoya Avramova
Bayesian Estimation of Concordance among Gene Trees, Cécile Ané, Bret Larget, David A. Baum, Stacey DeWitt Smith, and Antonis Rokas
Purification, crystallization and preliminary crystallographic analysis of deoxyuridine triphosphate nucleotidohydrolase from Arabidopsis thaliana, Mamta Bajaj and Hideaki Moriyama
The Evolution of Color Polymorphism: Crypticity, Searching Images, and Apostatic Selection, Alan B. Bond
Common Genome-Wide Patterns of Transcript Accumulation Underlying the Wing Polyphenism and Polymorphism in the Pea Aphid (Acyrthosiphon pisum), Jennifer A. Brisson, Gergory K. Davis, and David L. Stern
Virgin Birth in a Hammerhead Shark, Demian D. Chapman, Mahmood S. Shivji, Ed Louis, Julie Sommer, Hugh Fletcher, and Paulo A. Prodöhl
Jhe in Gryllus assimilis: Cloning, sequence-activity associations and phylogeny, E. J. Crone, Anthony J. Zera, A. Anand, J. G. Oakeshott, T. D. Sutherland, R. J. Russell, Lawrence G. Harshman, Federico G. Hoffmann, and C. Claudianos
ROBUST POPULATION MANAGEMENT UNDER UNCERTAINTY FOR STRUCTURED POPULATION MODELS, A. Deines, E. Peterson, Derek Boeckner, J. Boyle, A. Keighley, J. Kogut, J. Lubben, Richard Rebarber, R. Ryan, Brigitte Tenhumberg, S. Townley, and Andrew J. Tyre
A Review of Leg Ornamentation in Male Wolf Spiders, with the Description of a New Species from Australia, Artoria schizocoides (Araneae, Lycosidae), Volker W. Framenau and Eileen Hebets
Does Species Diversity Limit Productivity in Natural Grassland Communities?, James B. Grace, T. Michael Anderson, Melinda D. Smith, Eric W. Seabloom, Sandy J. Andelman, Gayna Meche, Evan Weiher, Larry K. Allain, Heli Jutila, Mahesh Sankaran, Johannes Knops, Mark Ritchie, and Michael R. Willig
The cost of reproduction: the devil in the details, Lawrence G. Harshman and Anthony J. Zera
SUBADULT FEMALE EXPERIENCE DOES NOT INFLUENCE SPECIES RECOGNITION IN THE WOLF SPIDER SCHIZOCOSA UETZI STRATTON 1997, Eileen Hebets
Experience leads to preference: experienced females prefer brush-legged males in a population of syntopic wolf spiders, Eileen Hebets and Cor J. Vink
The αD-Globin Gene Originated via Duplication of an Embryonic α-Like Globin Gene in the Ancestor of Tetrapod Vertebrates, Federico G. Hoffmann and Jay F. Storz
Genetic Microheterogeneity and Phenotypic Variation of Helicobacter pylori Arginase in Clinical Isolates, Justin Hovey, Emily Watson, Melanie Langford, Ellen Hildebrandt, Sangeetha Bathala, Jeffrey Bolland, Domenico Spadafora, George Mendz, and David McGee
Microarray Challenges in Ecology, Jan E. Kammenga, Michael A. Herman, N. Joop Ouborg, Loretta Johnson, and Rainer Bretling
Negative correlation does not imply a tradeoff between growth and reproduction in California oaks, Johannes M. H. Knops, Walter D. Koenig, and William J. Carmen
A Practical Approach to Phylogenomics: The Phylogeny of Ray-Finned Fish (Actinopterygii) as a Case Study, Chenhong Li, Guillermo Ortí, Gong Zhang, and Guoqing Lu
Habitat Area Affects Arthropd Communities Directly and Indirectly Through Top Predators, Örjan Östman, Nicholas W. Griffin, Jared L. Strasburg, Jennifer A. Brisson, Alan R. Templeton, Tiffany M. Knight, and Jonathan M. Chase
Evaluation of Metals in a Defined Medium for Pichia pastoris Expressing Recombinant β-Galactosidase, Bradley A. Plantz, Kenneth W. Nickerson, Stephen D. Kachman, and Vicki L. Schlegel
Alkaline iron(III) reduction by a novel alkaliphilic, halotolerant, Bacillus sp. isolated from salt flat sediments of Soap Lake, Jarrod Pollock, Karrie A. Weber, Joe Lack, Laurie A. Achenbach, Melanie R. Mormile, and John D. Coates