The text file contains all the alignments associated used in the analyses in Nexus format. [HBB 1kb upstream flanking sequence] #NEXUS begin data; dimensions ntax=18 nchar=1144; format missing=? gap=- datatype=dna ; matrix Homo_HBB ---------------------------------------------------------AGAGGAAAAAAAT------AATCTGAGCCAAGT---AGAAGACCTTTTCCCCTCCTACCCCT-ACTTTCTAAGTCACAGAGGCTTTT---TGTTCCCCCAGACACTCTTGCAGATTAGTCCAGGCAGAAACAGTTAGATGTCCCCAGTTAACCT-CCTATTTGAC---ACCACTGATTACCCCATTGATAGTCA---CACTTTGGGTTGTAAGTGACTTTTTATTTATTTGTATT--TTTGACTGCATTAAGAGGTCTCTAGTTTTTTATCTCTTGTTTCCCAAAACCTAATA-AGTAACTAATGCACAGAG----CACA-TT-GATTTGTATTTATT--CT--ATTTTTAGACATAATTTATTAGCATGCATGAGCAAATTAAGAAAAACAACAAC-AAATGAATGCATATATATGTATATGTATGTGTGTATATATACACACATATATATATATATTTTTTCTTTTCTTACCAGAAGGTTTTAATCCAAA----TAAGGAGAAGATATGCTTAGAACCGAGGTAGAGTTTTCATCCATTCTG--TCCTGTAAGTATTTTGCATATTCTGGAGACGCAGGAAGA--------------------------GATCCATCTACATATCC-CAAAGCTGAATTATGG-----TAGACAAAACTCTTCCACTTTTAGT---GCATCAACTTCTTATTTGTGTAATAAGAAA-ATTGGGAAAACGATCTTCAATAT-GCTTACCAAGCTGTGATTCCAAATATTACGTAAATACACTTGCAAAGGAGGATGTTTTTAGTAGCAATTTGTACTGATGGTATGGGGCCAAGAGATATATCTTAGAGGGAGGGCTGAGGGTTTGAAGTCCAACTCCTAAGCCAG----TGCCAGAAGAGCCAAGGACAGGTACGGCTGTCATCACTTAGACCTCACCCTGTGGAGCCACACCCTAGGGTTGGCCAATCTACTCCCA-GGAGCAGGGAGGGCAGGAGCCAGGGC-TGGGCATAAAAGTCAGGGCAGAGCCATCTATTGCTTACATTTGCTTCTGACACAACTGTGTTCACTAGCAACCTC---AAACAGACACC- Rabbit_HBB ------------------------------------------ATTCTTAGTGGTTTAGAAGGGATGAAAC------AGCTCAGGCT--GT---AAATGTCTTCCCATGCTCCTACCACC-ACCTTCAAGATC-CAGAAACATCCCCGTTTTTCCCTAGACACTTTCCCAGATCA-CCAAGGCAGAGCTAATTAGGCATCCAGTGTGGGTAT-GGCATTGTAA---GCCATTGCTTTTCCTAGCGTTA-CAG---CACT--GGCATGTAGCTGG-TTTTGACACATGTGTAGT--TTTCACCTCATTGAGAGGTCCCT-GTTTCCATTGCTTCACCCCCCAAACCATAACAGAGTAAAAATTCCACAAAA----TAAATTT-GATTCAAATTTATT--CT--ATTTTAAAAGTTTATTTATTTGATTATATGATAAAATTAA-ATGAGTAACAAC--AACAATAACATATA---------------ATGAATAAATTAATAAGTGT----------------TTTTCTTACCAGGAAGATTTACTCCAAA---GCAGAAGGAAGTCGTACTTATAACTATGGCACAGGTTTCATCCATTCTGTTTTTTGTAATTATTTTGGATATTCTGAAGACATAAAGAGATCTCTCTCTCTCTCTCTCTCTCTCTCTACCTATCTATTTATCTATTTAAGTGGATTTCAA-----CACACAAATCTTCTCCCTTTTCTGT---GCCTTAAATCCTCATTTGTATGATAA-ATA-ATTGCAGAGAAAATTTTTCATAG-GCTTACCAGGCTCTAATAACAAAAATTATATAAATAAATTTGGCAAGAAAGGTGTTTTCAGTAGCAATTAGTACTGCTGGTATGGGTCTGGGAGATACA---TAGAAGGAAGGCTGAGTCT-----GTCAGACTCCTAAGCCAT----TGCCATAACTGCCAAGGACAGGGGT-GCTGTCATCACCCAGACCTCACCCTGCAGAGCCACACCCTGGTGTTGGCCAATCTACACACG-GG-GTAGGGATTACATAGTTCAGGACTTGGGCATAAAAGGCAGAGCAGGG-CAGCTGCTGCTTACACTTGCTTTTGACACAACTGTGTTTACTTGCAATCCCCCAAAACAGACAGA- Cavia_HBB -----------------------------CCACCTCCTGCTACTTATCTCTATTTTCCTACTTGTTAAATCCACTTAAGCTGAGAAGTGAG-AATAACTCTTCAAATTATTCTACCTGC-TTTCTTGAATTGTTCAATATCTTT-GGTATTGGCTTATATGTTAAAGAAAAACAATCT-GTTACCATAGTTTAAACACCATTTGTGGCTCT-TCTTCTTAC----CATGTAGTACTTTTCATTGAGATCAG--AAACT--GCCATTTTATCACTTTTTCAGTAATCTTCAGTAGTTTTTCAGTAGTTCAGAGTTTTGCAGTTAGAAGGATTCACAAAAGAAGGAAGAAAGTTATCACTATGGCAAAATATTTGTGTATTCTGCCTTAATTCTATTTACTCCATTTTAAAACATCATTTATTTGATTTGTTGATCAAACTAA-AGAAATAATTG---AACACAAAAAA------------GTCCTGACAAATGAATGCATGAGTAT--------------TTATTTCTTACCAGGAGGATTTAATCCAAATGAAGAGAAGTAAGGCATAACTAGAACCATGAGGGAAGCTTAATCCATTTT---CCTTGTGATTAATTTGCATGTCCTGGAGACACAGGA-----------------------------GATCCATCCATGCTCTC-TTATGCTGGAG---AA-----CAGACAAATCCCTTCCAATTTTGGTGCCTCAATTCTTTTTCATTTGTATAGTAA---A-ATTGAGAAAGTAATGTCTAATCT-ACCTACTAAATAGTTACTTCAAAAAAT---TGTATAAGATTTCCAAAA-----------AGAAGCAGTTTGTACTACTGAGATGGGACCAGAAGGTACC---TAGAGAGTGGGCAGGTCTTCTGAAGTCAGAGACCTAAACTGA----TGTCAGTACTGCCAAGCACAGGTAGAGCTGTCATCAATCAGGCCCCACCCTGCAGAGCCACACCCTGGCCTTAGCCAATCTGCTCACA-GGAGCAGAGAGGGCAGGAGCCAGGGT-TGGGCATAAAAGGCAGAAAAAGACCGGCTGCAGCTTACACTTGCTTCTGACACAGTTGTGTTCACTGGCAACCCAG--AAACAGACACT- Spermophilus_HBB_T2 -----------------------------------ACTTAAATTATCTTTTATGTGTGCAAAAATCAACTTAAAGGGGCTCCACCTTTTTG-AAACTGTCTTTCTGACTGTCTTTTGTT-CTTCACTAAT---TATTCGTGAC----TTTAATTTCTTAGG-TAGCTTACACTCTCATTGGTAGGAT-------GAATTTCTTAATGAGGT-GCTGACTATGTCCCCTATAGCTTCTGCTAATTCAACACATAAAACTTTGTGTTGTAAATGGCTTTAAGCTAATTT-TAAC--TTTTACTGTATTAAAGGGTCTCAATGTTTCCATGTCTTGGTCAACAAAACATAATAAAGTAAGTATTGCACA-AA----CATAATTGGACTCAGATTTATT--CTG-ATTTTCAAATA----TTATTTGATTAGATGAACAAACTAA-ACAAACACACAC--AAAAACATCAAAAAT-------TGAATGACTGAAAGAATTAATGAATAT-------------TTATTTTCTTAGGAGGAGGATGAAATCCAAATCAGGAGAAAGAAGACATACTTAGAATCATGAGAGAGCCTTTATCCATTCTG--TCTGTGGATTATTTTATATATTCTGGAGAAACAGGAGGA--------------------------GATCACTCCATACACTC-TT--GCTAAAACACAA-----CAGGCACATTTCTTCTATAATTTGT---GCCTCCTTTCCAAATTTACATAATAAGATA-ATTAGGGAAATAATTTCCAATAG-ACCTACCAGATAGTTATTCCAAAATTCATAGAAGTAAAGTTGCCCAGGAGGCTGATTTTAGGGCCAACTTGAACTGCTGGCATGGGACCAGTAGATATG---AAGAAGGAGGACTGAGAGCCTGAAGTTAGACTCC-AAGGCAG----TGCCAGAGCTGCCAAGGACTGTTATGGCTGTCATCATGCAAATCTCACCCTGTAGGGCCACACCCTAGTCTTGGCCAATGAGCTCATT-AGGGCAGGGAATGCAGGAGTCAAGGC-TGGACATAAAGGACAGAGCAGGGCCAGCTGCTGCTTATACTTGCTTCTGACACACTTGTGTTTGCTAGCAACCCTCC-AAAAAGACACA- Spermophilus_HBB_T4 -------------------------------------ACAGCATTCCTAGAAGCTTAGCAGGGAAAAAAAAAAAAAAACCATAGCCAAGGGCAGAATGTCTTGTCACCTTCTGACTACT-AGGTTTAAAT---CAGAGGATCT----TCTCTGCTTTCACATTTTCCCACATGACTCCAGGTAGAAC--------CATCCATCATTAATCT-CCCATTTGAA---AATGTTGCTATTGCTAATACTACACAC--AACTTCGTGTTTTAAATGGCTTTATATTAATTT-TCAT--TTATACTGTATTAGGCAGTCTCAATGTTTCCATGTCTGGGTC-ACAAAACCTAATGAATAAATTATTACACATAA----TATGGTTGGATTCAGATTTATT--CTATTTTTTGGAACATCATTTATTTAATTAGGTGACCAAATTAATGCAAACACACAC--AGAAAAAACAG------------CAACAAATGAATGAATTAATAAATAT-------------TTATTTTCTTACCAGGAGGATTTAATCCAAATCAGGAGAAGGAAGACATACTTAGACCCATGATAGAGGCTGTATTCATTCTG--TCTGTGGGTTATTTTGCATATTCTGTAGAAACAGGAAGA--------------------------GATACATTCATATACTC-TTATGCTGAACTATAA-----CAGGCAAATCTGTTCTATTTTTTTCTGGGCTTCCTTTCCCAATTTACAGAATAAGA-A-ATTAGAGAAATAATCCCGAATAGAACCTACCAGGCAGTTATTTCAAAATTCATAGAAGTAAAGTTGCCCAGGAGGCTGATTTTAGGGCCAACTTGAACTGCTGGCATGGGACCAGCAGCTATG---AAGAAGGAGGACTGAGAGCCTGAAGTCAGACTCC-AAGGCAG----TGCCAGAGCTGACAAGGACTGTTATGGCTGTCATCATGCAAATCTCACCCTGTAGGGCCACACCCTAGTCTTGGCCAATGAGCTCATT-AGGGCAGGGAATGTAGGAGTCAAGGC-TGGGCATAAAGGACAGAGCAGGGCCAGCTGCTGCTTACACTTGCTTCTGACACACTTGTGTTTGCTAGCAACCCTCC-AAAAAGACACA- Spermophilus_HBB_T3 --------------------------GATTCTAAAACACAGCATTTCTCGAAGCTTAGCAGGGAAAGAA-------AACCATAGCCAAGGGCAGAAGGTCTTGTCACCTTCTGACTACT-GGATTTAAAT---CAGAGGATTT----TCTCTGCTTTCACGTTTTCCCAGATGACTCCAGGTAGAAC--------CATCTCTCATTAGTCT-CCCGTTTG-A---AATGTTGCTTCTGCTAATACTACACAT--AACTTCGTGTTTTAAATGGCTTTATATTAATTT-TCAT--TTCTACTGTATTAGGCAATATCTATGTTTCCATGTCTGGGTC-ACAAAACCTAATGAAGAAATTATTACACAAAA----TATGTTTGGATTCAGATTTATT--CTA-TTTTTGGAACATCATTTATTTGATTAGGTGACCAAATTAATGCAAACACACAC--AGAAAAAACAG------------CAACAAATGAATGAATGAATGTATAT-------------TTATTTTCTTACCAGGAGGATTTAATCTAAACCAGGAGAAGAAAGACATACTTAGAACCATAGTAGAGGCTGTATCCATTCTG--TCTGTGGGTTATTTTGCATATTCTGCAGAAACAGGAAGA--------------------------GCTACGTTCATACAATC-TTGTGCTGAACCACAA-----CAGGCAAGTATGTTCTA--TTTTGCTGGGCTTCCTTTCCCAATTTATAGAATAAGA-A-ATTAGGGAAATAATCTCTAATAG-ACCTACCAGGCAGTTATTCCAAACATCATAGAAGTAAATTTTCCCAGGAACATGATTTTAGGGGCAACTTGAACTGATGGCATGGGACCAGTAGATATG---AAGAAGGAGGACTGAGAGCCTGAAGTCAGACTCC-AAGGCAG----TGCCAGAGCTGCCAAGGACTGTTATGGCTGTCATCATCCAAACCTCACCTTATAGGGCCACACCCTAGTCTTGGCCAATGAGCTCATT-AGGGCAGGGAATGCAAGAGTCAAGGC-TGGGCATAAAGGACAGAGCAGGGCCAGCTGCTGCTTACACTTGCTTCTGACACACTTGTGTTTGCTAGCAACCCCCCTAAAAAGACACA- Rattus_HBB_T1 CACACACAGAGACACATATACACATATACATTTACACACAGACATACTCACAGATATACAGACACACAGTCAGAGACATACACACGAACACACACACACACACACACACACACACACCACACACACACATAGACACACACAGA--GATACAAATTTACATACATGGGCGGCATATGCTGAGGCATTGGTTCAGTGAATAAAGCTCAAGGCTGCTTGCCTGCTTGTAATTCAAGAGCTTGGAAGACAGGACAAACCAAGACATCCCTGGAAAGGCAGGCTATCCAAGC-TAACTGTATTTGTG---------TTTAC---GTGAGAGATACTGACTCAACACTAAGGTATAGAGCAATCAAGGGCGATTCCCTGAAAGCAGTT-TTGAACTCCTCATACACTCCTCTCACACAC-----TTCAGAGAACTTGATAAAACACATATACTCAAGTAAGTCATACAAACATTTATA------TGAGAGAAGGAAAAAAAGAGCAAATACA-----GTATGATGCACTTTCTTATCAGGAGGTTTTGTTGACCC----CAGAAAGAAGTCATATTTAGAATCAAGATGGAGCTGTCACCAGGAATG--CTAAAGAT--TTTTTGCACATTATTGGGCAATGTAGAGA-----------------GTGAAGGAGATTTTTTTCATGCCC---TCAAACTGAGGAATAATGA--GAAGAAATTCACTTTTAAGCTTTGC---TTCTCAGT--------------------------GGAAAAGTAAT-TTTAACA--AGCAATTTAGTAGTTGATTGAG--------CAAATGCA-TTGCAAAAAAGAATG-CTTTTGGGACAGCGTTTTC-----------------------TT---CAGAGGGAGTACCCAGAGC------TGGCACTCCTGAGCCAG----TGGCCCAGCATCCAGGGAGAGATATGCTTGTCATCACCGAAGCCTGATGCTGTAGAGCCACACCCTGGTATTGGCCAATCTGCTCACACAGGACAGCGAGAGCAGGAGCCA-GGC-AGAGCATAAAAGGTGGGGCGGGATCAGTCGCTCCTCACATTTGCTTCTGACATAGTTGTGTTGACTCACAAACTCAG-AAACAGACACC- Mus_Balbc_HBB_T1 -----------------------------------ACATACACATATTCACAGATATACAGAGATACAG------ACACACACTCAGAGACATACACATGGACATGCATACACACA-CACAGATATACACAGATACACAC----------------ACACACATGGGCAGCATGTGCTGAGGACTTGGTTCAGTAAATAAAGGTCAAGGC----TGCCTGCCTTTAATTCAAAAGCGTGGAAGACAGGACA---------ATCCCTGAAAAAGCAGGTTATCCAAGC-TAACCAGATTTGTGAGCTCAGGGTTTAC---TTGAGAGATCCTGACTCAACAATAAGGTATAGAGCAATCAAGGGCGATTCTCTGAAGGCAGTTATTGAACTCCTTGTACACTCTTCCCACACACACGTGTTCAGAGAACTTGATAAAACACATATATACAAGTAAGCCACACAAACATTCACA------TGAGAGAAGAAAAACAAGAGCAAACTAA-----GTAAGATGCATTTTCTTATCAGGAAGTTTAGTTGACAC----CAGAAAGAAGTCATATTTGGAATCAAAATGGAATCATCATCATGTATG--CTAAAGATGTTTTTTTCACATTCTTGAGCAATGTGGACA-----------------GAGAAGGAGA-TTCATCCATGCAC---TCAAACTGGGAAACAAAGA--AAAGAAATCCTCTTCTAAGCTTTGC---TTCTCAATTTCTTATTTGCATAATGAGAAAAAAAGGAAAATTAAT-TTTAAC---ACCAATTCAGTAGTTGATTGAG--------CAAATGCG-TTGCCAAAAAGGATG-CTTTAGAGACAGTGTTCTCTGCACAGATAAGGACAAACATTATT---CAGAGGGAGTACCCAGAGC------TGAGACTCCTAAGCCAGTGAGTGGCACAGCATCCAGGGAGAAATATGCTTGTCATCACCGAAGCCTGATTCCGTAGAGCCACACCCTGGTAAGGGCCAATCTGCTCACACAGGATAGAGAGGGCAGGAGCCAGGGC-AGAGCATATAAGGTGAGGTAGGATCAGTTGCTCCTCACATTTGCTTCTGACATAGTTGTGTTGACTCACAACCCCAG-AAACAGACATC- Mus_C57_HBB_T1 ----------------------------CAAATACACACACACATATTCACAGATATACAGAGATACAG--------ACACACTCAGAGACATACACATGGACATGCATACAAACA-CACAGATACACA------CATAC----------------ACACACATGGGCAGCATGTGCTGAGGACTTGGTTCAGTAAATAAAGGTCAAGGC----TGCCTGCCTTTAATTCAAAAGCATGGAAGACAGGACA---------ATCCCTGAAAAAGCAGGTTATCCAAGC-TAACCAGATTTGTGAGCTCAGGGTTTAC---TTAAGAGATCCTGACTCAACAATAAGGTATAGAGCAATCAAGGGTGATTCTCTGAAGGCAGTTATTGAACTCCTTGTACACTCCTCCCACACACATGTGTTCAGAAAACTTGATAAAACACATATATACAAGTAAACCACACAAACATTCACA------TGAGAGAAGAAAAAAAAGAGTAAATAAA-----GTAAGATGCATTTTCTTATCAGGAAGTTTAGTTGACAC----CAGAAAGAAGTCATATTTGGAATCAAGATGGAGTCATCATCATGTATG--CTAAAGATGTTTTTTCCACATTCTTGAGCAATGTGGACA-----------------GAGAAGGAGA-TTCATCCATGCAC---TCAAACTGAGAAACAAAGA--AAAGAAATCCTCTTCTAAGCTTTGC---TTCTCAATTTCTTATTTGCATAATGAGAAAAAAAGGAAAATTAAT-TTTAACA--ACCAATTCAGTAGTTGATTGAG--------CAAATGTG-TTGCCAAAAAGGATG-CTTTAGAGACAGTGTTCTCTGCACAGATAAGGACAAACATTATT---CAGAGGGAGTACCCAGAGC------TGAGACTCCTAAGCCAGTGAGTGGCACAGCATCCAGGGAGAAATATGCTTGTCATCACCGAAGCCTGATTCCGTAGAGCCACACCCTGGTAAGGGCCAATCTGCTCACACAGGATAGAGAGGGCAGGAGCCAGGGC-AGAGCATATAAGGTGAGGTAGGATCAGTTGCTCCTCACATTTGCTTCTGACATAGTTGTGTTGACTCACAACCCCAG-AAACAGACATC- Pero_maniculatus_HBB_T2 ----------------------------------------------------------CTAGT-CACATTGATCTGCAACCG-TTGTATATTATTATGCTGAGTAATTGAGTAACCAGATAAGACT-ATTCCCTGTTTAGATTGTATTTATGC-AGTGGCCTTTTCAT--ATTTATTTTATTTTATTTTT---TTGCTATCGAAACACACTAACTATAGG-----CACATTAAATTTTGTAGTGGCAAATAA-GGCTTAGTTGTTTAAAACATTTAGTCAAAACAATCCTTA--TATATACACAGATGAAT-GCATGAATATTTTCCACAAAATGTACTGGGCATTATGATATCAGGTAATGGTTCAGATGCAAATTGAGTAGGTGAAACTCAGAGATGTTAGCTCTGAATGTGA-TGCAGGGCTTACACTGGTGACTAGGTAGGAATAGCAGTCTACTTTAGACCAATGC---TTCCATCACTGGGCATTATAAAAACAAGTG----------------ATGATTTTAGACTACAGATTGCTATAGAC---AGCATCAGATAGTACATTTTGGTTTTGCAGATATGCCTCAAAAATTTTATTCTGACGTCAAGAAAGTTACATTTGTTAAAAGTAGCAATTATTTTT----------GTCTTAATGTTGGCAA-TTTTATGAGTGCCCCAATGTTGTCTGTTGCTGCAATAGAGATTTATCTGATTTGTGTA--GTTACTGTCCTCAAATGCTA-----------ACTTGAGAATGGATTCATAATGGTGCTATTTCTTTAGGTAACTTATCAGCAAGAGAATTAAACTTCAAAGTAACAG---TCTCTGGCACACAGCCAAGTAC----ATCATAGCTGGTGGTGTT---CAGGTCTAATTGTGTGTAGCCCCAGCCAGAAT---AAGCCTG----TGTCATATCCACCCTGGGTAGGTATGGCTGTGATCATTGAAGCCTCACCCTGAAGAGCCACACCCTGGCACTAGCCAATCTGCTCAAGCAA-GCAGAGGGGGCAGGAGCCAGGGC-AGGGCATATAAAGTAGAGCAGGATCAGTTGCTGCTTACATTTGCTTTTGATACTGTTGTGTTGACTTGCAACCTCAG-AAACAGACACC- Pero_leucopus_HBB_T2 -------------------------------------------------GGTTCTAAACTAATACAAGACTACATACAAAGGAATGGTTATCA-AATATTGTCCAGCCACGTGGCAAGGTATAGAT--TTATAAAAATGGGTTAATTTAAGATAAAAGAACAGTTAGC--AAGAAGCCTGCCACGGCCAT---ACAGTTTATAAGTGATATAAGCGTCTG-----AGTGATTATTTTATAAGTGGATTGTGG-GACTGCGGGGCTTGGGGAACCTGG--AGAGAAGCCCTCC--AGCA---ACAGATGAAT-GCATGAATGTTTTCCACAAAATGTACTGAGCATTATGATATCAGGTAATGGTTCTGATGCACATTGAGTAGGTGAACCTCAGAGATGTTAGCTCTGAATGTGA-TGAAGGGCTTACACTGGTGACTAGGTAGGAATAGAGATCTACTTTAAACCAATGC---TTCCATCACTGGGCATTATAAAAACAAGTG----------------ATGATTTTAGACTACAGATTGCTATAGAC---AGCATCAGATAGTACATCTTGGTTTTGAAGGTATGCCTCAAAAATTATATTCTGACATCAAGAAAGTTACATTTGTTAAAAGTAGCAATTATTTTT----------GTCTTAATGTTGGCAA-TTTTACGAGTGCCCCAATGTTGTCTGTTGCTGCAATATAGATTTATCTGATTTGTGCA--GTAACTGTCCTCAAACGTTC-----------ACTTGAGACTGGATTCATAAGGGTGCTATTTCTTTAGGTAACTTATCAGCAAGAGAATTAAACTTCAAAGTAACAG---TCTCTGGCACACAGCCAAGTAC----AT-----CTGGTGGTGTT---CAGGTCCAGTTGTGTGCAGCCCCAGCCAGAAT---AAGCCTG----TGTCATATCCACCCTGGGTAGGTATGGCTGTCATCACTGAAGCCTCACCCTAAAGAGCCACACCCTGGCAGTGGCCAATCTGCTCAAGCAA-GCAGAGAGGGCAGGAGCCAGGGC-AGGGCATATAAAGTAGAGCAGGATCAGTTGCTGCTTACATTTGCTCTTGATACTGTTGTGTTGACTTGCAACCTCAG-AAACAGACACC- Pero_maniculatus_HBB_T1 --------------------------------------------------------TGTTTCAAAGCATTGGGTTCTAAATGGTTTTAT----ATTTTTTTTTTCAAAATTGAGAATTCTTTGTTTGGTTCTTTGGATCCCTAAAATTGAATTGAGCCACTACTGCACAGAATATGCTCAATTCAAACTT---ATCATTTTTCAA-ACATTATTTGGCTA-----TGTG-TAAAAATGAAAGAAATAGGTAA-GCTCACATACATAGGTATAGGCA--CACACACACACAGA--TACACCCAAACATGAGCAGCATGTACTGCCTTCCTGTAATTCAAAAGCTTGGAAGATATCAGGTAATGGTCGAGATGCACGTTGAGTAGGTGAAACTCAGAGATGTTAGCTCTGAATGTGA-TGAAGGGCTTACACGGGTGACTAGGTAGGAATAGCAATCTACTTTAAACCAATGC---TTCCATCACTGGGCATTATAAAAACAAGTG----------------ATGATTTTAGACTACAGATTGCTATAAAC---AGCATAAGATAATATATCTCGGTTTTGTGGGTATGCTTCAAAAATTTTAATCTGAGGTCAAGAAAGTTACATTTGTTAAAAGCAGCAATTATTTTT----------GTCTTAATGTTGGCAAATTTTATGAGTGCCCCAATGTTGTCTGTTGCTGCAATAGAGATTTTTCTGATTTGTGTA--GTTACTGTCCTCAAATGCTA-----------ACTTGAGAATGGATTCATAATGGTGCTATTTCTTTAGGTAACTTATCAGCAAGAGAATTAAACTTCAAAGTAACAG---TCTCTGGCACACAGCCAAGTGT----ATCTTAGCTGGTGGTGTT---CAGGTCCAATTGTGTGCAGCCCCAGCCAGAAT---AAGCCTG----TGTCATATCCACCCTGGGTAGGTATGGCTGTCATCACTGAAGCCTCACCCTGAAGAGCCACACCCTGGCACTAGCCAATCTGCTCAAGCAA-GCAG-GAGGGCAGGAGCCAGGGC-AGGGCATATAAAGTAGAGCAGGATCAGTTGCTGCTTACATTTGCTTTTGATACTGTTG-GTTGACTTGCAACCTCAG-AAACAGACACC- Pero_leucopus_HBB_T1 -----------------------------------------------------TAATGTTTCAAAACATTGGGTTCTAAATAGTTTTATATTGATTTTTTTTTTCAGAATTGAGAATTCTCTGTTTGGTTCTCTGGATCCCTAAAATTGAATTGAGCCACTACTGCACAGAATATGCTCAATTCAAACTT---ATCATTTTTCAA-ACATTA-TTGGCTA-----TGTG-TAAAAATGAAAGAAATAGGTAA-GCTCACATACATAGGTATAGGCA--CACACACACAGAGA--TAAACCCAAACATGAGCAGCATGTGCTGCCTTCCTGTGATTCAAAAGCTTGGAAGATATCAGGTAATGGTCATGATGCGCGTTGAGTAGGTGAAACTCAGAGATGTTAGCTCTGAATGTGA-TGAAGGGCTTACACTGGTGACTAGGTAGGAATAGAGATCTACTTTAAACCAATGC---TTCCATCACTGGGCATTATAAAAACAAGTG----------------ATAATTTTAGACTACAGATTGCTATAGAC---AGCATCAGATAGTACATCTTGGTTTTGAAGGTATGCCTCAAAAATTTTATTCTGAGGTCAAGAAAGTTACATTTGTTAAAAGTAACAATTATTTTT----------GTCTTAATGTTGGCAA---TTAAGAGTGTCCCAATGTTGTCTGTTGCTGCAATAGAGATTTATCTGATTTGTGCA--GTAACTGTCCTCAAACGTTC-----------ACTTGAGACTGGATTCATAAGGGTGCTATTTTTTTAGGTAACTTATCAGCAAGAGAATTAAACTTCAAAGTAACAG---TCTCTGGCACACAGCCAAGTAC----AT-----CTGGTGGTGTT---CAGGTCCAGTTGTGTGCAGCCCCAGCCAGAAT---AAGCCTG----TGTCATATCCACCCTGGGTAGGTATGGCTGTCATCACTGAAGCCTCACCCTAAAGAGCCACACCCTGGCAGTGGCCAATCTGCTCAAGCAA-GCAGAGAGGGCAGGAGCCAGGGC-AGGGCATATAAAGTAGAGCAGGATCAGTTGCTGCTTACATTTGCTCTTGATACTGTTGTGTTGACTTGCAACCTCAG-AAACAGACACC- Mus_Balbc_HBB_T2 ---------------------------------ATGAGCGACTGAATTAGTGAGAGAAGTAATGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGAAGAAAACT---------TCAACACAGGGAGAATATC---TTTCAAGCTCCCTTCA-CTGGGTTTACCTGTCACTAGGAAAAC-----CTTTCTCACT---TCT-TTCCCTCCCT---CTTTCTTTATCTCTGAATATTGCCACT-AATCTTAGGGTTATAAGTAGCTTTGTATTTCTTTTTTAT--TTTTTCCAAGTTGAGAGTTCTAT--GTTTCCTTGTCTGGATC-CCAAAAACTAAAAGAGAGAGAAATGTCCAAGA----CATGACC-AATTTACTTGTATG--CTACTTCCCATAAA-----TCATGTGACTAAATTAACAAATTAA-AGAATGAAGGA---AACATACCAAA------------CAAGTATGAAAGAAATGAATATATAT-------------TTATTTTCCTACC-TGAAGGTTTCTTCAAAA----CATGAAGAAAAA-TAGTTAGAAAAACAATAGAAGAATGAT-TATTTTGTCTTCTTTTCTTATGTTCCATAAT-TGGGGTGATCCTCTTGTGCACTCAAACTAAAAGAAAACGAACCAACATACCC----AGATCAAAACAA---AACAAAA---CAGGCAAATTTTCTTATATATAATGT--GTTTTAATTTTTTATTTGTGTAGTAAACAATATTGAAGAGATAATATTGAACAG-ACAAGCTATGTTATTGGTGCAAGAATT-GAAAAATACAGTATTTAAAGAAGATG-TTTTAGAAACAGAATTAGCTGCGAGGATAAGAACAGACACTACT---CAGAGTGA-GACCCAGAACT-----CAAATGTCTTAAGCCTG----TGCCATAGCCACCCTGTGTAGATATGGTTGTCATCTCTGAAGCCTCACCCTGCAAGGTAACACCCTGGCATTGGCCAATCTGCTCAGAGAGGACAGAGTGGGCAGGAGCCAGCAT-TGGGTATATAAAGCTGAGCAGGGTCAGTTGCTTCTTACGTTTGCTTCTGAGTCTGTTGTGTTGACTTGCAACTTCAG-AAACAGACATC- Mus_C57_HBB_T2 ------------------------------------------AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGAAGAAAACTCTTCAACACTTAACACAGGGAGAATATC---TTTCAAGATCCCTTCA-CTGGGTTTACCTGTCACTAGGAAAAC-----CTTTCTCACT---TCT-TTCCCTCCCT---CTTTCTTTATCTCTGAATATTGCCACT-AATCTTAGGGTTATAAGTAGCTTTGTATTTCTTTTTTAT--TTTTTCCAAATTGAGAGTTCTGT--GTTTCCTTCTCTGGCTC-CCAAAAACTAAAAGAGAGAGCAATGTCCAAGA----CGTGATC-AATTCACTTGTGTG--CTACTTCCCATAAA-----TCATGTGACTAAATTAACAAATTAA-AGAATGAAGGA---AACAAACCAAA------------CAAGTATGAAAGAAATGAATATATAT-------------TTATTTTCCTACC-TGAAGGTTTCTTCAAAA----CATGAAGAAAAA-TAGTTAGAAAAACAATAGAAAAATGAT-TATTTTGTCTTCTTTTCTTATGTTCCATAAT-TGGGGTGATCCTCTTGTGCACTCAAACTAAAAGAAAACGAACCAACATACCC----AGATCAAAACAA---AACAGAA---CAGGCAAATTTTCTTATGTATAATGT--GTTTTAATTTTTTATTTGTGTAGTAAACAATATTGAAGAGATAATATTGAACAG-ACAAGCTATGTTATTGGTGCAAGAATT-GAAAAATACAGTATTTAAAGAAGATG-TTATAGAAACAGAATTAGCTGCAAGGATAAGAACAGACACTACT---CAGAGTGA-GACCCAGAACT-----CAAATGTCTTAAGCCTG----GGCCATAGCCACCCTGTGTAGATATGGTTGTCATCTCTGAAGCCTCACCCTGCAGGGTAACACCCTGGCATTGGCCAATCTGCTCAGAGAGGACAGAGTGGGCAGGAGCCAGCAT-TGGGTATATAAAGCTGAGCAGGGTCAGTTGCTTCTTACGTTTGCTTCTGATTCTGTTGTGTTGACTTGCAACCTCAG-AAACAGACATC- Rattus_HBB_T3 ---------------------------------------------CTTTCTCTCTTTCAATTTTCCCTTCCTTTCTCTCTCTCTCCTTTTCTTCACCCTTTCTCTTTCACGAAACTTTC---CATTTAAGTGACAGGAAGTCCT---TCTGATATTCCAGACATCTGCAGATGATGACAGACAGAAAAAC-AGAACTGGACCATTCAATCT-TTCCTTTCAG---ATAATGGATTGTCTGAAAATTACTATT-AATCTTTGGGCTACAGCTAGCTTCGAATTCA-TT----T--TTTTTCTGAATTGAGAGTTCTTT--TTTTCCGTTTCTCCATC-TCAAGAACTAAAAGAGAGAGAAATATCCCAGA----CATGATA-AATTCAGCTGCATG--CTACTTCCTCCAAA-----TTACATGACTAAATGAACAAATTAT-AGAAATAAGGA---TACACATAAAA------------CATACTTGAAATAAATGAATACATAT-------------TTATTTTCCTACC-CAAAGATTTCTTCCAAA----GACGAAGAAAAC-CAA-TAGAAGAATGAT---TATGTTGT-CTTTTTCTTATGTTCTCTAATCTACATTAGTGGGGGGAGATCCTTTAATACACTCAAACTAAAAACAAAGAAAGAAACAACCCCCGCAAAAGCAAAACAAACAAACAAAAATTCAGGCAAATTTTCTCATGTATAAAGG--GCTTTAAATTTTCCTTTTTATATTAAACAATATCGAAGAGGTAATATCTAACAG-ACAAATTATGTTATTAATGCAAAAATT-CTTAAATATAATATTTA---AAGATG-TTTTAGAGACAGAGTTTGCTGCAAAGGTAAGAACACACAGTATT---CAGAATGAGGACCTGGAACT-----CTTATA-CCTAAGCCGG----TACCATAGCCACCCTGAGTAGTTATGGCTATCATCTCTGAAGCCTCACCCTGCAGAGACACACCCTCACATTGCCCAATCTGCTCACACAGGACAGAGTGATCAGGGGCCAGAAT-TTGGCATATAAAGCAGAACAGAACCAGTTGCTTCTTATATTTGCTTCTGATACTGTTGTGTTGACTCGCAACCTCAG-GAACAGACACCA Rattus_HBB_T2 --------------------------------------------TCTTTCTCTCTTTCAATTTTCCC-TCCTTTCTCTCTCTCTCCTTTTCTTCACCCTTTCTATTTCACGAAACTTTC---CATTTAAGTGACAGGAAGTCCT---TCTGATATTCCAGACATCTGCAGATGATGACAGACAGAAAAAC-AGAACTGGACCATTCAATCT-TTCCTTCCAG---ATAATGGGTTGTCTGAAAATTACTTTT-AATCTTTGGGCTACAGCTAGCTTCGAATTCATTT----T--TTTTTCTGAATTGAGAGTTCTTT--TTTTCTGTTTCTCCATC-TCAAGAACTAAAAGAGAGAGAAATATCCAAGA----CATGATC-AATTCAGCTGCATG--CTACTTCCTCCAAA-----TTACATGACTAAATGAACAAATTAT-AGAAATAAGGA---AACACATAAAA------------CATACTTGAAATAAATGAATACATAT-------------TTATTTTCCTACA-TAAAGATTTCTTCCAAA----GACGAAGAAAAC-CAA-TAGAAGAATGAT---TATGTTGT-CTTTTTCTTATGTTCTCTAATCTACATTAGTGGGGGGAGATCCTCTCATGCACTCAAATTAAAAACAAAGAAAGAAACAACCCCCCCAAAAGCAAAACAAACAAACAAAAATTAAGGCAAATTTTCTCATGTATAAAGG--GCTTTAAATTTTCATTTTTAGAGTAAACAA-ATCGAAGAGGTAATATCTAACAG-ACAAATTATGTTATTAATGCAAAAATT-CATAAATACAATAGTTA---AGGATG-TTTTAGAGACAGAGTTTGCTGCAAGGGTAAGAACACACACTACT---CAGAGTGAAGACCTGGAACT-----CTTATA-CCTAAGCCTG----TACCATAGCCACCCTGAGTAGTTATGGCTATCATCTCTGAAGCCTCACCCTGCAGAGGCACACCCTCACATTG-GCAATCTGCTCACACAGGACAGAGTGATCAGGGGGCAGAAT-TTGGCATATAAAGCAGAACAGAATGAGTTGCTTCTTATATTTGCTTCTGATACTGTTGTGTTGACTCGCAACCTCAG-GAACAGACACC- Rattus_HBB_T4 ----------------------------------------------TTTCTCTCTTTCAATTTTCCCTTCCTTTCTCTCTCTCTCCTTTTCTTCACCCTTTCTCTTTCACGAAACTTTC---CATTTAAGTGACAGGAAGTCCT---TCTGATATTCCAGACATCTGCAGATGATGACAGACAGAAAAAC-AGAACTGGACCATTCAATCT-TTCCTTCCAG---ATAATGGGTTGTCTGAAAATTACTTTT-AATCTTTGGGCTACAGCTAGCTTCGAATTCATTT----T--TTTTTCTGAATTGAGAGTTCTTT--TTTTCTGTTTCTCCATC-TCAAGAATTAAAAGAGAGAGAAATATCCAAGA----CATGATC-AATTCAGCTGCATG--CTACTTCCTCCAAA-----TTACATGACTAAATGAACAAATTAT-AGAAATAAGGA---AACACATAAAA------------CATACTTGAAATAAATGAATACATAT-------------TTATTTTCCTACA-TAAAGATTTCTTCCAAA----GACGAAGAAAAC-CAA-TAGAAGAATGAT---TATGTTGT-CTTTTTCTTATGTTCTCTAATCTACATTAGTGGGGGGAGATCCTCTCATGCACTCAAATTAAAAACAAAGAAAGAAACAACCCCCCCAAAAGCAAAACAAACAAACAAAAATTAAGGCAAATTTTCTCATGTATAAAGG--GCTTTAAATTTTCATTTTTAGAGTAAACAA-ATCGAAGAGGTAATATCTAACAG-ACAAATTATGTTATTAATGCAAAAATT-CATAAATACAATAGTTA---AGGATG-TTTTAGAGACAGAGTTTGCTGCAAGGGTAAGAACACACACTACT---CAGAGTGAAGACCTGGAACT-----CTTATA-CCTAAGCCTG----TACCATAGCCACCCTGAGTAGTTATGGCTATCATCTCTGAAGCCTCACTCTGCAGAGGCACACCCTCACATTGCCCAATCTGCTCACACAGGACAGAGTGATCAGGGGCCAGAAT-TTGGCATATAAAGCAGAACAGAACCAGTTGCTTCTTATATTTGCTTCTGATACTGTTGTGTTGACTCGCAACCTCAG-GAACAGACACC- ; end; [HBB cds] #NEXUS begin data; dimensions ntax=19 nchar=444; format missing=? gap=- datatype=dna ; matrix Rattus_HBB_T1 ATGGTGCACCTGACTGATGCTGAGAAGGCTGCTGTTAATGGCCTGTGGGGAAAGGTGAACCCTGATGATGTTGGTGGCGAGGCCCTGGGCAGGCTGCTGGTTGTCTACCCTTGGACCCAGAGGTACTTTGATAGCTTTGGGGACCTGTCCTCTGCCTCTGCTATCATGGGTAACCCTAAGGTGAAGGCCCATGGCAAGAAGGTGATAAACGCCTTCAATGATGGCCTGAAACACTTGGACAACCTCAAGGGCACCTTTGCTCATCTGAGTGAACTCCACTGTGACAAGCTGCATGTGGATCCTGAGAACTTCAGGCTCCTGGGCAACATGATTGTGATTGTGTTGGGCCACCACCTGGGCAAGGAATTCTCCCCCTGTGCACAGGCTGCCTTCCAGAAGGTGGTGGCTGGAGTGGCCAGTGCCCTGGCTCACAAGTACCACTAA Rattus_HBB_T2 ATGGTGCACCTAACTGATGCTGAGAAGGCTACTGTTAATGGCCTGTGGGGAAAGGTGAACCCTGTTGAAATTGGCGCTGAGTCCCTTGCCAGTCTGCTTATTGTCTACCCTTGGACCCAGAGGTACTTTTCTAAATTTGGGGACCTGTCCTCTGTCTCTGCTATCATGGGTAACCCCCAGGTGAAGGCCCATGGCAAAAAGGTGATAAACGCCTTCGATGATGGCCTGAAACACTTGGACAACCTCAAGGGCACCTTTGGCAGCCTCAGTGAACTCCACTGTGACAAGCTGCATGTGGATCCTGAGAACTTCAGGCTCCTGGGCAATATGATTGTGATTATGATGGGCCACCACCTGGGCAAAGAATTCACCCCGAGTGCACAGGCTGCCTTCCAGAAGGTGGTGGCTGGAGTGGCCAGTGCCCTGGCTCACAAGTACCACTAA Rattus_HBB_T3 ATGGTGCACCTAACTGATGCTGAGAAGGCTACTGTTAGTGGCCTGTGGGGAAAGGTGAATGCTGATAATGTTGGCGCTGAGGCCCTGGGCAGGCTGCTGGTTGTCTACCCTTGGACCCAGAGGTACTTTTCTAAATTTGGGGACCTGTCCTCTGCCTCTGCTATCATGGGTAACCCCCAGGTGAAGGCCCATGGCAAGAAGGTGATAAATGCCTTCAATGATGGCCTGAAACACTTGGACAACCTCAAGGGCACCTTTGCTCATCTGAGTGAACTCCACTGTGACAAGCTGCATGTGGATCCTGAGAACTTCAGGCTCCTGGGCAATATGATTGTGATTGTGTTGGGCCACCACCTGGGCAAGGAATTCACCCCCTGTGCACAGGCTGCCTTCCAGAAGGTGGTGGCTGGAGTGGCCAGTGCCCTGGCTCACAAGTACCACTAA Rattus_HBB_T4 ATGGTGCACCTAACTGATGCTGAGAAGGCTACTGTTAGTGGCCTGTGGGGAAAGGTGAATGCTGATAATGTTGGCGCTGAGGCCCTGGGCAGGCTGCTGGTTGTCTACCCTTGGACCCAGAGGTACTTTTCTAAATTTGGGGACCTGTCCTCTGCCTCTGCTATCATGGGTAACCCCCAGGTGAAGGCCCATGGCAAGAAGGTGATAAATGCCTTCAATGATGGCCTGAAACACTTGGACAACCTCAAGGGCACCTTTGCTCATCTGAGTGAACTCCACTGTGACAAGCTGCATGTGGATCCTGAGAACTTCAGGCTCCTGGGCAATATGATTGTGATTGTGTTGGGCCACCACCTGGGCAAGGAATTCACCCCGTGTGCACAGGCTGCCTTCCAGAAGGTGGTGGCTGGAGTGGCCAGTGCCCTGGCTCACAAGTACCACTAA Spermophilus_HBB_T1ps ATAGTACATCTGACTTAAAATGGGAAGCCTGCCATTGATGTCCTGTGGGGCAAGATGAATGTAGATGAAGTTGGTGGTGAGGCCCTGGGCAGGCTACTGGTGGTCTACCCATGGACCCAGAGGTTCTTTGATGCCTTTGGGGACCTGTCCTCTGCATCTGCTGTTATGGGCAATGCTAAAGTGAAGGCGCATGGCAAGAAGGTGATTGATTCCTTTAGTAATGGCCTGAAACACCTCGACAACCACAAGGGCACCTTTGCAAGTCTCAGTGAGCTGCACTGTGACAAGCTGCATGTGGATCCTGAGAACTTCAAGCTCCTAGGCAATGTGATTGTGGTTGTGATGGCCCATCA-CTGGGCAAGGAATTCACCCCGCAGGTTCAGGCTGCTTTTCAGAAAGTAGTGACTGGTGTGGCCAATGCCATGACTCACAAATACCACTAA Spermophilus_HBB_T2 ATGGTGCATCTGAGTGATGGGGAGAAGAATGCCATTAGCACTGCCTGGGGCAAGGTGAATGCAGCAGAAGTTGGTGCTGAGTCTCTGGGCAGGCTGCTGGTTGTCTACCCATGGACCCAGAGGTTCTTTGATGCCTTTGGGGACCTGTCCTCTGCATCTGCTGTTATGGGCAATGCTAAAGTGAAGGCTCATGGCAAGAAGGTGATTGATTCCTTTAGTAATGGCCTGAAACACCTCGACAACCTCAAGGGCACCTTTGCAAGTCTCAGTGAGCTGCACTGTGACAAGCTGCATGTGGATCCTGAGAACTTCAAGCTCCTGGGCAATATGATTGTGATTGTGATGGCCCATCACCTGGGCAAGGATTTCACTCCAGAGGCACAGGCTGCTTTTCAGAAGGTGGTGGCTGGTGTGGCCAATGCCCTGTCTCACAAATACCACTAA Spermophilus_HBB_T3 ATGGTGCATCTGAGTGATGGGGAGAAGAATGCCATTAGCACTGCCTGGGGCAAGGTGAATGCAGATGCAATTGGTGCTGAGTCTCTGGGCAGGCTGCTGATTGTCTACCCATGGACCCAGAGGTTCTTTGATTCCTTTGGGGACCTGTCCTCTGCATCTGCTGTTATGGGCAATGATAAAGTGAAGGCGCATGGCAAGAAGGTGATTGATTCCTTTAGTAATGGCCTGAAACACCTTGACAACCTCAAGGGCACCTTTGCAAGTCTCAGTGAGCTGCACTGTGACAAGCTGCATGTGGATCCTGAGAACTTCAGGCTCCTTGGCAATATAATTGTGATTGTGTTGGCCCATCACCTGGGCAAGGATTTCACTCCAGAGGCACAGGCTGCTTTTCAGAAGGTGGTGGCTGGTGTGGCCAATGCCCTGGCTCACAAATACCACTAA Spermophilus_HBB_T4 ATGGTGCATCTGAGTGATGGGGAGAAGAATGCCATTAGTACCGTCTGGGGCAAGGTGGATGTAGATGCAGTTGGTGCTGAGGCCCTGGGCAGGCTGCTGATTGTCTACCCATGGACCCAGAGGTTCTTTGATTCCTTTGGGGACTTGTCCTCTGCATCTGCTGTTATGGGCAATGCTAAAGTGAAGGCTCATGGCAAGAAGGTGATTGATTCCTTTAGTAATGGCCTGAAACACCTCGACAACCTCAAGGGCACCTTTGCAAGTCTCAGTGAGCTGCACTGTGACAAGCTGCATGTGGATCCTGAGAACTTCAGGCTCCTTGGCAATGTGATTGTGATTGTGCTGGCCCATCATCTGGGCAAGGATTTCACCCCAGAGGCACAGGCTGCTTTTCAGAAGGTGGTGGCTGGTGTGGCCAATGCCCTGGCTCACAAATACCACTAA Rabbit_HBB ATGGTGCATCTGTCCAGTGAGGAGAAGTCTGCGGTCACTGCCCTGTGGGGCAAGGTGAATGTGGAAGAAGTTGGTGGTGAGGCCCTGGGCAGGCTGCTGGTTGTCTACCCATGGACCCAGAGGTTCTTCGAGTCCTTTGGGGACCTGTCCTCTGCACATGCTGTTATGAGCAATCCTAAGGTGAAGGCTCATGGCAAGAAGGTGCTGGCTGCCTTCAGTGAGGGTCTGAATCACCTGGACAACCTCAAAGGCACCTTTGCTAAGCTGAGTGAACTGCACTGTGACAAGCTGCACGTGGATCCTGAGAACTTCAGGCTCCTGGGCAACGTGCTGGTTGTTGTGCTGTCTCATCATTTTGGCAAAGAATTCACTCCTCAGGTGCAGGCTGCCTATCAGAAGGTGGTGGCTGGTGTGGCCAATGCCCTGGCTCACAAATACCACTGA Pero_maniculatus_HBB_T1 ATGGTGCACCTGACTGATGCTGAGAAGGCTCTGGTCACCGGCCTGTGGGGAAAGGTGAAACCTGAGGAAATTGGTGGTGAGGCCCTGGGCAGGCTGCTGGCTGTCTACCCTTGGACCCAGAGGTTCTTTGACAGCTTTGGAGACCTGTCCTCTGCCTCTGCTATCATGGGTAATGCCAAGGTGAAGGGCCATGGCAAGAAGGTGATTGACTCCTTTGGTGAAGGCCTGAAACACCTGGACAACCTCAAGGGCACCTTTGCCAGCCTGAGTGAGCTCCACTGTGACAAACTGCATGTGGATCCTGAGAACTTCAAGCTCCTGGGCAATATGATCGTGATTGTGATGGCCCACCACCTGGGCAAGGACTTCACCCCTGCTGCACAGGCTGCCTATCAGAAGGTGGTGGCTGGTGTGGCCACTGCCCTGGCTCACAAGTACCACTAA Pero_maniculatus_HBB_T2 ATGGTGCACCTGACTGATGCTGAGAAGGCTCTGGTCACCGGCCTGTGGGGAAAGGTGAAACCTGAGGAAATTGGTGGTGAGGCCTTGGGCAGGCTGCTGGCTGTCTACCCTTGGACCCAGAGGTTCTTTGACAGCTTTGGAGACCTGTCCTCTGCCTCTGCTATCATGGGTAATGCCAAGGTGAAGGGCCATGGCAAGAAGGTGATTGACTCCTTTGGTGAAGGCCTGAAACACCTGGACAACCTCAAGGGCACCTTTGCCAGCCTGAGTGAGCTCCACTGTGACAAACTGCATGTGGATCCTGAGAACTTCAAGCTCCTGGGCAATATGATCGTGATTGTGATGGCCCACCACCTGGGCAAGGACTTCACCCCTGCTGCACAGGCTGCCTATCAGAAGGTGGTGGCTGGTGTGGCCACTGCCCTGGCTCACAAGTACCACTAA Mus_C57_HBB_T1 ATGGTGCACCTGACTGATGCTGAGAAGGCTGCTGTCTCTGGCCTGTGGGGAAAGGTGAACGCCGATGAAGTTGGTGGTGAGGCCCTGGGCAGGCTGCTGGTTGTCTACCCTTGGACCCAGCGGTACTTTGATAGCTTTGGAGACCTATCCTCTGCCTCTGCTATCATGGGTAATGCCAAAGTGAAGGCCCATGGCAAGAAAGTGATAACTGCCTTTAACGATGGCCTGAATCACTTGGACAGCCTCAAGGGCACCTTTGCCAGCCTCAGTGAGCTCCACTGTGACAAGCTGCATGTGGATCCTGAGAACTTCAGGCTCCTGGGCAATATGATCGTGATTGTGCTGGGCCACCACCTGGGCAAGGATTTCACCCCCGCTGCACAGGCTGCCTTCCAGAAGGTGGTGGCTGGAGTGGCCGCTGCCCTGGCTCACAAGTACCACTAA Mus_C57_HBB_T2 ATGGTGCACCTGACTGATGCTGAGAAGGCTGCTGTCTCTGGCCTGTGGGGAAAGGTGAACGCCGATGAAGTTGGTGGTGAGGCCCTGGGCAGGCTGCTGGTTGTCTACCCTTGGACCCAGCGGTACTTTGATAGCTTTGGAGACCTATCCTCTGCCTCTGCTATCATGGGTAATGCCAAAGTGAAGGCCCATGGCAAGAAAGTGATAACTGCCTTTAACGATGGCCTGAATCACTTGGACAGCCTCAAGGGCACCTTTGCCAGCCTCAGTGAGCTCCACTGTGACAAGCTGCATGTGGATCCTGAGAACTTCAGGCTCCTGGGCAATATGATCGTGATTGTGCTGGGCCACCACCTGGGCAAGGATTTCACCCCCGCTGCACAGGCTGCCTTCCAGAAGGTGGTGGCTGGAGTGGCTGCTGCCCTGGCTCACAAGTACCACTAA Mus_Balb_HBB_T1 ATGGTGCACCTGACTGATGCTGAGAAGGCTGCTGTCTCTTGCCTGTGGGGAAAGGTGAACTCCGATGAAGTTGGTGGTGAGGCCCTGGGCAGGCTGCTGGTTGTCTACCCTTGGACCCAGCGGTACTTTGATAGCTTTGGAGACCTATCCTCTGCCTCTGCTATCATGGGTAATGCCAAAGTGAAGGCCCATGGCAAGAAGGTGATAACTGCCTTTAACGATGGCCTGAATCACTTGGACAGCCTCAAGGGCACCTTTGCCAGCCTCAGTGAGCTCCACTGTGACAAGCTGCATGTGGATCCTGAGAACTTCAGGCTCCTGGGCAATATGATCGTGATTGTGCTGGGCCACCACCTGGGCAAGGATTTCACCCCCGCTGCACAGGCTGCCTTCCAGAAGGTGGTGGCTGGAGTGGCCACTGCCCTGGCTCACAAGTACCACTAA Mus_Balb_HBB_T2 ATGGTGCACCTGACTGATGCTGAGAAGTCTGCTGTCTCTTGCCTGTGGGCAAAGGTGAACCCCGATGAAGTTGGTGGTGAGGCCCTGGGCAGGCTGCTGGTTGTCTACCCTTGGACCCAGCGGTACTTTGATAGCTTTGGAGACCTATCCTCTGCCTCTGCTATCATGGGTAATCCCAAGGTGAAGGCCCATGGCAAAAAGGTGATAACTGCCTTTAACGAGGGCCTGAAAAACCTGGACAACCTCAAGGGCACCTTTGCCAGCCTCAGTGAGCTCCACTGTGACAAGCTGCATGTGGATCCTGAGAACTTCAGGCTCCTAGGCAATGCGATCGTGATTGTGCTGGGCCACCACCTGGGCAAGGATTTCACCCCTGCTGCACAGGCTGCCTTCCAGAAGGTGGTGGCTGGAGTGGCCACTGCCCTGGCTCACAAGTACCACTAA Cavia_HBB ATGGTGCACCTGACTGCTGCAGAGAAGTCTGCCATCTTAGACCTGTGGGGCAAGGTCAACGTGGGAGAAATTGGTGCCGAGGCCCTGGGCAGGCTGCTGGTTGTATACCCATGGACCCAGAGGTTCTTTGAGAAATTTGGGGACCTGTCTTCTGCTTCTGCTATCATGAGCAATGCGCATGTGAAGTCTCATGGCGCAAAGGTGCTGGCTTCCTTCAGTGAAGGCTTGAAACATCTGGAAGACCTCAAGGGCACCTTTGCTAAGCTGAGCGAGCTGCACTGTGACAAACTCCACGTGGATCCTGAGAACTTCCGTCTCCTGGGTAACATGATTGTGATTGCTCTGGCCCATCACCATCCGTCGGAGTTCACCCCTTGCACGCAGGCTGCCTTCCAGAAGGTGACTGCTGGTGTGGCTAATGCCCTGGCTCACAAGTACCACTGA Homo_HBB ATGGTGCATCTGACTCCTGAGGAGAAGTCTGCCGTTACTGCCCTGTGGGGCAAGGTGAACGTGGATGAAGTTGGTGGTGAGGCCCTGGGCAGGCTGCTGGTGGTCTACCCTTGGACCCAGAGGTTCTTTGAGTCCTTTGGGGATCTGTCCACTCCTGATGCTGTTATGGGCAACCCTAAGGTGAAGGCTCATGGCAAGAAAGTGCTCGGTGCCTTTAGTGATGGCCTGGCTCACCTGGACAACCTCAAGGGCACCTTTGCCACACTGAGTGAGCTGCACTGTGACAAGCTGCACGTGGATCCTGAGAACTTCAGGCTCCTGGGCAACGTGCTGGTCTGTGTGCTGGCCCATCACTTTGGCAAAGAATTCACCCCACCAGTGCAGGCTGCCTATCAGAAAGTGGTGGCTGGTGTGGCTAATGCCCTGGCCCACAAGTATCACTAA Pero_leucopus_HBB_T1 ATGGTGCACCTGACTGATGCTGAGAAGGCTCTGGTCACTGGCCTGTGGGGAAAGGTGAAACCTGAGGAAATTGGTGGCGAGGCCCTGGGCAGGCTGCTGGCTGTCTACCCTTGGACCCAGAGGTTCTTTGACAGCTTTGGAGACCTTTCCTCTGCCTCTGCTATCATGGGTAATGCCAAGGTGAAGGCCCATGGCAAGAAGGTGATTGACTCCTTTGGTGAAGGCCTGAAACACCTGGACAACCTCAAGGGCACCTTTGCCAGCCTGAGTGAGCTGCACTGTGACAAACTGCATGTGGATCCTGAGAACTTCAAGCTCCTGGGCAATATGATCGTGATTGTGATGGCCCACCACCTGGGCAAGGACTTCACCCCCGCTGCACAGTCTGCCTATCAGAAGGTGGTGGCTGGTGTGGCCACTGCCCTGGCTCACAAGTACCACTAA Pero_leucopus_HBB_T2 ATGGTGCACCTGACTGATGCTGAGAAGGCTCTGGTCACTGGCCTGTGGGGAAAGGTGAAACCTGAGGAAATTGGTGGCGAGGCCCTGGGCAGGCTGCTGGCTGTCTACCCTTGGACCCAGAGGTTCTTTGACAGCTTTGGAGACCTTTCCTCTGCCTCTGCTATCATGGGTAATGCCAAGGTGAAGGCCCATGGCAAGAAGGTGATTGACTCCTTTGGTGAAGGCCTGAAACACCTGGACAACCTCAAGGGCACCTTTGCCAGCCTGAGTGAGCTGCACTGTGACAAACTGCATGTGGATCCTGAGAACTTCAAGCTCCTGGGCAATATGATCGTGATTGTGATGGCCCACCACCTGGGCAAGGACTTCACCCCCGCTGCACAGTCTGCCTATCAGAAGGTGGTGGCTGGTGTGGCCACTGCCCTGGCTCACAAGTACCACTAA ; end; [HBB 1kb downstream flanking sequence] #NEXUS begin data; dimensions ntax=12 nchar=1569; format missing=? gap=- datatype=dna ; matrix Rabbit_HBE ACTCTCTTCCCAGTTTCTTTAGTG-CCCCTACTCATCCCCAGCGTC--CTCCTTCTGTACCTT-----GGGGACTAGGC---TCAGCCTTGATGGCACAG-TTTCTGTTTAATAAAATACATTCTATTCAGTAATCAAAAAATGAT--GTCTCATCTTCTT--CGTATT-TTACTCATGTGTTTA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAAAAAAAAACCACACATGTTCATGATTGAGACAGAGAGAGACATAGGAA--GAAATAAGAAT--CTTTGAGTAGTATATTAGGATTTATCAAATAAAGGGAGGTGTTATTGGAGGGTACAGGAGAATCCAGAGAGGACACCAAGATGGGGAAGAAGTTCTCTTGGGTGGGGCAAAGGCTTCATTAAGT------GGACTG--------AGTGTGGCAAAAACATACGGCAGAGGG-AAGGGAATGAGGGACCAAAGTGGTATCTGCGAAATCAGATTTATGGTGAATGTTG--TTTCACT-----------CAAAAGAAAGATTTGTAGTGAT-CAAAACTCTAGACATGGTAATACTAT----TTTAATG---------TACTTGAACAT-ACACATTGAAGAAATTAGCTTGATTT--ATATCTTGAGAAATTGGTTTGAATATAAAGAAATGAGTTAAAGTA-TGAGTTGGAAATTTCCAGAAAAAAATGTTTTCATGAACAA--ACTGCAGTT-----TGTTCTTTCCTGAAGGGTTCTGTTGTCTCAATGGGATGCCAAGACTGAGACATATTACATCATTGTGCATTATCTTCTGATTGAATGCTG---------------------TAAAATAAAGCTAG--TTTCAACACAAATGAAAACTT-TCATGGG---AAAGATAAAGATTTCATGTAGAAAATAAA-ATACTAGCA----AATGTGCCTGGTCCTAAATCAGCAAGGTAAAACTTGGTGTCATAGATGGAACTGGAATTCTGGAAGTAGAGGGGAGTATTAGGAAAGATTAGATAGTGCTGAGCTTTGAC-TATAAAAAATAAAATCTACTACTAGGC-TATTAGCGACAATGAGTTATAA-ATATTCTTAGGATGCTAAGTGACT----CCATGGATAAGA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Cavia_HBE GCTCGTTTCTGCAGTCTGCCAGCA-CTCCTGTGTGCCCCCGATACC--CTCCTTCTGCTCAT------GGGGACTGGGA---TGGGCCTTAAAAGTACAA-CTTCTTTTCAATAAAAATTATTCTCTTCAGTTATCAAACATTGAT--GTTTTGTTTTCTC--CATCTT-TTACCCTTGTATTAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGGGAAAGCATTCATG---------GGCTGAAGGGTGTTGCAGTGTAGGAA--GAAATGAAAGAACCTTTCAGAAGCATGCAGGAACTCATCAACATA-----CTTGTCAGTGGAAGATC-----------------------AAAATGGGGAGGATGCTCTATC----CAGAGCAAGGGTTAGTTAAGCAGGCAGAGATGTGTG-GGGCAATGCGGCAAAAAC-TGCTGCAGAGAG-GAAAAAGGATGAGCC--TGGTGGAAACTGAGAAAGCAAAGATGTGATCAATGCCAAGTTTCATTAA----AAATAAAATGCAAAATCTTTGCAGGAT-TTGAGGTCTAAACG-AAGATTACTAA----TATAAAT---------CATTCTAATAT-ACGTTTTGAAGCAGCTACCTTGCC----ATGGCTTTTGAGATTGACTTGGAGATAAGGAGATAAGTTAAGGGAGTTTTTCTGAGTTTTGCAGAAAAA---GTCCACATGACTTA--ACAATAGCT-----TGCTCTTTTCCAAAGGGTCCTTTTGTCTTTTTTTTTCTTTGACACGAAGTCTCACTTTGCAGTTCAGGATGGCCTT--GAACTCACTTTGTAGTC----------------TAGGCTGACCTTGTGCTCACAGTG-ATCCGCGTGCCG-CAGCCTCCT-GAGGGCTGGGATTGCAGGTGTGTGTCACCATGCCCAGCT----GGGGAGCCAAGAATAAAACACATGGAATCGCTGTGCATCATCTGGAAGAATGTAGCACGCACTAAAATAAAATTAGAGTTAATATACAAGGAATAACCTT----TTTGGA-GGCAGTGA-TAAAAACGA-TGTAGGAGATAAAAGTCTATATGAATAGTAACAAGGCTTGTAGTTTAAGACCAATGA-GATTGGGCATGATGACCTGCATGAAATTTCCTCC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Spermophilus_HBE ACCCGCCTCCCTATT-CACCAGTG-CTCCCGTGTGTCCCCAGTACC--CTCCTTCTGTACAT------GGGGACTGAGC---TCAGCCTTGAAAGCATAG-CTTCTGCTTAATAAAACA---TTTCTTCAGTAATTCAAAATTGAAAAGTTTTGTCTTCTC--CATTTT-TTACTCTTTTGTACT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAGAAG---------------------------TAGGAAGAGACATAGGAA--GAAACGAGAGTTTCTTTGAGAAGTGTATAGAGACACATAAAGTCAAGC-ATATATTATTAAAAGATC--------------AAGGACACTAAGATGGGGAAGAATTTCTATGGGTATGGGGAAATGGTGAGTTAAGTCAGCAGGGACTTGTG-GGATAGGGTGGCAAAAACTTGCTATAGAGGG-GAAAAAGGAAGTGGT--AAATGATACCCAAGAAAGCAGATTTGTAGTACAAGCCAAATTTCATTAACATCAACAATAATAATAAAGTCTTCTGGGAT-CTGAGGTCTAGG-ATAGGATAACTAT----TTTAATT---------TATTCTAATAT-CCACCTTGA-GCAGCTAAATTGTCAA--ATGTGATATGAAACTGTTTTAGAGGTATGGGGTTGAATTGAGTGA-TGACTGAGCACTTTCTAGAATAA---GTTCCCATGATTCA--ACAATAGCT-----TGCTCTTTT-------------TTATCCTAATGGAGCACCGTGGCTAAGACACATGAAATAATTGTACATTATATTCTGATAGAATATAGCACAC----------------TAAAATGAAGTTAAAATTACTATATATGTGGGGACAT-TGGGGGATGAGGAGATGAAAACTTTATGTAGGAGAAATCTACATGAATACTTCAAGGCTCATGGTCTAAAACCAACAAGTCAGGGATTGGTGACTTGCATGAAACTGCCTCTTTGAAA-----GGAGAGTATCAGCAAAGACCCAATAGTGCAAGAACTTGAC-TATAAAAA-TACAAGCTATTGCTGCACCTGGTGGTGCACACCTGTAATCCCAGGAACTCTGGAAGCTGAGAGAGGAAGATCACAAGTTAAAGGCAGACCTCAGCAACTTATTG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Mus_Balbc_HBE -GCCCTCTCTCTAGCTGTCCAGCA-ATCCTGTGTGTCCGCTATGCC--TCCTCTCTGCACAT------GAATACTG--C---TGTTCCT--GAAGCACAT-CAT--GTT-AATAAAGCACCTCCG-------AATCAAAA--TCG-----TTTG-CTTGTC--TGCTTT-CTACTTT-ATGCT-A--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGACACATATTTG----TGTATTTGTGGAAAAAGGGGGAATGCACAGGAAATGACTCAGGCATTTATCTGAAACCTGCA--GGGACTCAAGAGAGAAACGTAGACGCCATGGAAGGCTTCTACA---CCCAGAGAGAGTCTAAAGCTGA-AAAGAATTCTCAGAGAGAAGAAAGAA------ATTTAGTGGAGAAGGCATTGTG-TATGGAACATATGAACATTTACTGTAGAGGGTGAAGAAAAGGGTGAC--AAGTGATACCTTGCA--GCAG-GTTGTGACAT--CCCAT-TACCATT------------AAGAAAAAGCTCTTACGAGAT-CCAAGAGCTAAG-ATAGAATTA-------------------------ACTTTCTTTT---AAAAAGCATTTATTGGGTAACCAA--TTGGTGTGATCTGCCCCGGGGAAGACTCTTGATCCAGCTCTCAGCAACCCTTAGTTGACTATAATTCTTTGTGTATGGTTGAGGTC--TCATCGGCTTTATTTACCCCACCCATATTAGCAAATGTGTATCACAGCAAGCTTCATGGTCTTTTGGCTCTTACAATCCTTTTCCCTTCTTCTGAAGTGTTCCCTGATCCTTAGGTG-----------TGTAGATGTATCCACTGAGGTTAGGCTCCACAACTCTGAAGTTTGAATGGTTGTGGATTTCTGTACTGGTCTTTGTCTATTACAA---AGAGTGTTCTACATGAGAGGAGAAGACTACAACTTATACATACACACACACACACACACACACAC--ACATACATACAATTACAATGGCAAAATGACACGATTT--TGAAAGGGAGCAAGGAGGGTATACAGAGG-GTTTGGAGGGAGAAAAGAAAAGGGTGATGTGTTTTAAC---CATATTATAA-TTTCAAAAACAGTTTT---AAAAATTTATTGTTTTAAGT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Mus_C57_HBE -GCCCTCTCTCTAGCTGTCCAGCA-ATCCTGTGTGTCCGCTATGCC--TCCTTTCTGCACAT------GAATACTGGAC---TGTTCCTTGAAAGCACAT-CAT--GTTTAATAAAGATCATCCTTCCTGGTAATCAAAAATTCAG---TTTTGTCTTGTC--TGCTTT-CTACTTTTATGCT-A--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGACACATATTTG---ATGTGTTTTTGGAAA---GGGGGAAGCACAGGAA--GACTCAGGCATTTATCTGAAACCTGCA--GGGACTCAAGAGAGAAACGTAGAAGCCATGGAAGGCTTCTACAGG-CCCAGTGAGAGTCTAAAGCTGAGAAAGAATTCTCAGAGAGAAGAAAGAA------ATTTAGTGGAGAAGGCATTGTG-TATGGAACATATGAACATTTACTGTAGAGGGTGAAGAAAAGGGTGAC--AAGTGATACCTTGCA--GCAG-GTTGTGACAT--CCCAT-TACCATT------------AGGAAAAAGCTTTTACAAGAT-CCAAGAGCTAAT-TTAGAATTA-------------------------ACTTTCTTTA---AAAAAGCATTTGTTGGGTAACCAA--TTGGTGTGCTCTGCCCCGGGGAAGACTCTTGATCCAGCTCTCAGCAACCCTTAGTTGACTGTAATTCTTTGTGTATGGTTGAGGTC--TCATGGGCTTTATTTACCCCACCCATATTAGCAAATGTGTATCACAGCAAGCTTCATGGTCTTTTGGCTCTTACAATCTTTTGCCCTTCTTCTGAAGTGTTCCCTGATCCTTAGGTG-----------TGTAGATGTATCCACTGAGGTTAGGCTCCACAACTCTGAAGTTTGAATGGTTGTGGATTTCTGTACTGGTCTTTGTCTATTGCAA---AGAGTGTTCTACATGAGAGGAGAAGACTACAACTTATACATATACACACACACACACACA--------CATACATACAATTACAATGGCAAAATGACACGATTT--TGAAACATGGGGAGGGGGCAACATTGGAG-ATGTAAAGTGAATTAATTAGTGGG-GAAAAAAGAAAAT---AAAAAAGTAA-AAA-AAAAATCATAAT---AAAAGTAAATT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Mus_Balbc_HBGE --GCCCTTTCCCTGATGTCCAGCA-TT-CTGTACACCCCTCA--GC--TCTGCCCTACCCAT------GGCCACTGTGC---TGGTCTCTGAAAGCAGGG-CTTCTGCTTAATAAAGTCCATTCTTTTCAGTAAACCATGAGTCAT--ATTTTGTTGTGTC--TGTTTC-TTACTTTTGTGTTTA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGAAAGAAGGCCG---ATGGGCAGATGGTAA---GGGAGCGAGACAGAAG--GACACTTGAGTTTCTTTTAGAACTTTGCTGGAATTCAGGAGAGGAA-GTAGATGTTACAGAATTTTTCTAGAGC-CCCAGGAAAGATGAAAAGTTGG-GGATAATTCTCATGTAGGAAAGCAAAGGGTTAATGCCGTGGAGAAAAAAGTTC--TGTGGTAGTCACTAAAACTTAGTGTAGAGGGTGAAGAAATGCACGAC--AAATGATCACCTA-----CAG-TCTGTGTTATGTGCCAT-T-TAATT------------AAGTTAAA-CTGTAGACAGAT-CTAATGCTCAAC-CTGAGATAAT-----------------------CAGTTAAAT------------------TCTTTTAAAAA--ATAATTTGCTTTTATTAT----GATTTTTTTTTTTTACTTTTTTGTTTTCTTTTTTCCCCACTAATTAAT----TCACTTTACATC--TCCAATGTT----GCCCCCTCCCCATCCCCCCTCACACAATTTCTTCTCACATCCTGCCTC---TTCTCCTCTGAAAGGGTTGATCCCCTCCTAGGGTACCCCCCCCCCC---------CAACCCTGGCATATCAACTCTCTTCCTGACTAGGCACATCTTTTCCCACTGATGTCAGACAAGGCCATCCACTTAGGGGAATTGATTCTGACAG---ACAGTGAACAGCTTTAGAG----ACAGACAGGCTTATATTCTCCAGTTGTTGGGGGAACC--------ACGAGAAGATTGAGCTACATATCTACTCCATAT-GTGCTGGGACCT-AGGTTCAGCGTGCATAAGCT--CTTTGATTGGTGGTACAGTCTCTGAGAACCCCCAACA--GTCCAGGTTAG-TTACTCT-GTTGGTCTATCTGTG---GAGTTCCTATCCCC-TTAGGGTCCCTCTATCC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Mus_C57_HBGE --GCCCTTTCCCTGATGTCCAGCA-TT-CTGTACACCCCTCA--GC--TCTGCCATACCCAT------GGCCACTGTGC---TGGTCTCTGAAAGCAGGG-CTTCTGCTTAATAAAGTCCATTCTTTTCAGTAACCCATGAGTCAT--ATTTTGTTGTGTC--TGTTTC-TTACTTTTGTGTTTA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGAAAGAAGGCTG---ATGGGCAGATGGTAA---GGGAGCGAGACAGAAG--GACGCTTGAGTTTCTTTTAGAACTTTGCTGGAATTCAGGAGAGGAAAGTAGATGTTACAGAATTTTTCTAGAGC-CCCAGGAAAGATGAGAAGTTGG-GGATAATTCTCATGTAGGAAAGCAAAGGGTTAATGCCGTGGAGAAAAAAGTTC--TGTGGTAGTCACTAAAACTTAGTGTAGAGGGTGAAGAAATGCATGAC--AAATGATCACCTA-----CAG-TCTGTGTTATGTGCCAT-T-TAATT------------AAGTTAAA-CTTTAGACAGAT-CTAATGCTCAAC-CTGAGATAAT-----------------------CAGTTTAAT------------------TATTTTAAAAA--ATAATTTACTTTTATTAT----GATTTTTTTT----ACTTTTTTATTTTCTTTTTTCCCCACTAATTAAT----TCACTTTACATC--TCCAATGTT----GCCCCCTCCCCATCCCCCCTCACACAATTTCTTCTCACATCCTGCCTC---TTCTCCTCTGAAAGGGTTGATCCCCTCCTAGGGTATCCCCGCCCACACACACA--CAACCCTGGCATATCAACTCTCTTCCTGACTAGGCACATCTTTTCCCACTGAGGTCAGACAAGGCCATCCACTTAGGGGAATTGATTCT-ACAG---ACAGTGAACAGCTTTAGAG----ACAGACAGGCTTATATTTTCCAGTTGTTGGGGGAACC--------ACAAGAAGATTGAGCTACACATCTGCTACATAT-GTGCTGGGACCT-AGGTTCAGCGTGTATAAGCT--CTTTGATTGGTGGTACAGTCTCTGAGACCCCCTAACA--GTCCAGGTTAG-TTACTCT-GTTGGTCTTTCTGTG---GAGTTCCTATTCCC-TTAGAGTCCCTCTA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pero_maniculatus_HBE -----GCCCTCTACCTGTCCAGCA-ATCCTGTGTGTCCCCTACTAC--ATCTTTCTGCACAT------GAGAAATGGAC---TGATCCTTGAGAACACAG-ATT--GTTTAATAAAGATCATTCATCCCAGTAATCAAAAAGTCAT---TTTTGTTTTGTC--TGTTTT-TTACTTCAGTGCT-A--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGAAAAATGTTTG---ATGGGTTTGTGGTAG----AGGGGAATACAGGAA--GACACGCGAGTTTCTCTGAAAACTGGA--AGGACTCAAGAGAGGAGAGTAGATGCCATTGAAGGCTTCTACTGG-CCCAGGGAGAGCCTATAGCTGGGAAAGAATTCTCAAAGAG-----------------------GAGAAGGAATTGTG-TGTGGAACATATAGAAACTTACTGTAGAGGGTGAAGAAAAGGATAA--------GTATCTAATG--GCAG-GTTGTGACATATCCCAT-TTCAATT------------AAGAAAAAGCTTT--AGAGAT-CCAAGATCTAAG-ATAGGATTATTAT----TTTAAATTACTTAATGTACTTTTTTTTTCCTAAAAGGATTTATTGGATAACCAA--TTAGTATGCTCTTCCCTGAGGAAGACTATTTCCCCAGCTCTCAGCATTCTTTAGTTGCCTGTAATTCTTTGTGTGTGGTTGAAATC--TCATTGACT----TTCTCCTATCGATGTTAG----TGTGTCCCACAAGAAACTCCTTGATCCTCTGGCTCTTACAATCTTTTGTTCCTCTTCTGCAGTGTTCCCTGAGCCTTAGGTGTGGGAGTGTTTTGTAAATGTATTCACTGGAACTGGGTTCCACAACTCTGCATTTTGATTGGTGGTGGATTTCTGTAGTGCTCTCCATCTATTGCAA---AGAGAGG-CTCCCTGAATG---AGGGGTGAAGATTACACTTACATATACATGTATGCA-----------ATA---ACAATTAAAGACAAAAGAAGACATAAATT--TGAA-GAGAGAAAGGAAAGTATATAGAAGAGTTTGGATAGAGGAAAGAAAAGTGAGATATGTTGTAAC---TATATCACAA-TTTCCAAAATGTTTTTTAAAAAGATTTATTATTTTA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pero_maniculatus_HBGE -GCCCCCTTTCTTGATGAGCGGCA-CTGCTGTGCACCTCTCA--GG--CTCATCTTACACAA------GACCACCTTGT---TGGGATTTGAAACTTGAG-CTTCTGCTTAATAAAGTCCGTTCTCTTCAGTAACCC--GAGTCAT--GCTTTGTTGTGTG--TGTTTC-TTACTATTGTGTT-A--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGAAAGAAGGTTG---ATGGGTGCATGGTAG---TCAAGAGGTGCCACAG--GACACCAGAGTTTCTTTGAAAACTGTATCGGGACTCAGAAGAGGAAGGTAGATGTTATGGGACTTTTCTAGGGT-GTCAAGGAGGATGAAGAGTTGA-GAAGAATTCTCATGTAGGAAAGCAAAGGGTTAATTAACTGGAGAATGAATTGT--GCTGACAGTTGCTAAAACTTAGTGCAGAGGGTGAAGAAAAGCATGGC--AAGTGATGACCTG-----CAG-GTTGTGATATGTGTCTT-T-TCATT------------AAGATAAAGCTTTAGATAGAT-CTAATGTCTAAG-CTGAGATAATG----------------------CACTCAGAT-------------TTTTTATTTTTAAGAA--ATGATTTACTTTATTTTT----AATCATGTGTCTCTGTGTCTGTCACTGTTTGGTTTTGTGCATGTGAGTGCA-AGAGTCTATGGCAGCTAGAAGCT----CAGGTCCCACTGGAACTGGAGTTACAGGTGGTTGTGACTGCCTGCCATGAGTGCTGGGAACTGAACTCAGTTCCTCTGAGAGTGTATGTACTCTTA-----------AACACTGAGCCATC--ATCTCTCCAGGTTCAAGTGTACATTTTCCAGCAGATACTTTATCAGG-TGTCCTCT----GAAGCTGATTGC--AAG---AAAACGGACAAATTGATAG----AGAGCAGTGACCATTTAAGACAATGTTTCAATAAAACCAC----CATAGCAGGCTTGCGTTTTGAAGGAATTCCTTGTCTCAATGGTGAATCAAAGCTAGGAGACAC-AGTTCACTGTAATTTTCTGTAGGGCTGTAATGAGCAATGAGATGGTGATAGAGAAA-GGACAGAAGTAGAACCTTGTCAGGTCAAGTGGGGACGATG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pero_leucopus_HBE -----GCCCTCTACCTGTCCAGCA-ATCCTGTGTGTCCCCTACTAC--ATCTTTCTGCACAT------GAGAAATGGAC---TGATCCTTGAGAACACAG-ATT--GTTTAATAAAGATCATTCATCCCAGTAATCAAAAATTCAT---TTTTGTCTTGTC--CATTTT-TTACTTCAGTGCT-A--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGAAAAATGTTTG---ATGGGTTTGTGGGAG----AGGGGAATACAGGAA--GACACCTGAGTTTCTCTGAAAACTGGA--AGGACTCAAGAGAGGAGAGTAGATGCCATTGAAGGCTTCTACTGG-CCCAGGGAGAGCCTATAGCTGGGAAAGAATTCTCAAAGAG-----------------------GAGAAGGAATGGTG-TGTGGAACATATAGAATCTTACTGTAGAGGGTGAAGAAAAGGATAA--------GTATCTAATG--GCAG-GTTGTGACATATCCCAT-TTCGATT------------AAGAAAAAGCTTT--AGAGAT-CCAAGATCTAAG-ATAGGATTATTAT----TTTAAATTATTTAATGTACTTTTTTTT-CCTAAAAGGATTTATTGGATAATCAA--TTAGTATGCTCTTCCCTGAGGAAGACTATTTCCCCAGCTCTCAGCATTCTTTAGTTGCCTGTAATTCTTTGTGTGTGGTTGAAATC--TCATTGACT----TTCTCCTATCGATGTTAG----TGTGTCCCACAAGAAACTCCTTGATCCTCTGGCTCTTACAATCTTTTGTTCCTCTTTTGCAGTGTTCCATGAGCCTTAGGTGTGGGAGTGTTTTGTAAATGTATTCACTGGAACTGGGTTCCACAACTCTGCATTTTGATTGGTGGTGGATTTCTGTAGTGCTCTCCATCTATTGTAA---AGAGAAG-CTCCCTGAATG---AGGGGTGAAGATTACACTTACATATACATGTATGCA-----------ATA---ACAATTAAAGACAAAAGAAGACATAAATT--TGAAAGAGAGAAAGGAAGGTATATAGAAGAGTTTGGATAGAGGAAAGAGAAGTGAGATATGTTGTAAC---CATATCACAA-TTTCCAAAATGGTTTTTAAAAAGATTTATTATTTTA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Rattus_HBGE --GCCCCTTCCCTGACTTCCAGCA-TT-CTGCATATCCC-CA--GC--TCTGTCCTACACAT------GACCACTCTGC---TGGTCTCTGCAAGCAAGA-CTTCTACTTAATAAAGTCCATTCTCCTCAGTAATCCATGAGTCAT--ATTTTGTCCTATC--TGTTCC-TT----TTGTGTTTA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGAAAAAAGACTG---ATGGACAGAAAGGAA---GGGAGAGACACAGAAG------------TTTCTTTGAAAACTGTGTTGGCAGTTAGGAAAGGAGAGTAGATGTTATAGAATTTTTCTGGGGC-CCCAGAAAAGATGAAAAGTTGG-GGA-AATTCTCATGTACAAATGCAAAGTGTTAATTCCCTGAAGAATAAA-TTG--TGTGGCAGCCACGAAAAGCTAGTATATCGGGTGAAGAAAAGCATGGC--AACTGATTGCCTG-----CTC-TCTGTGATATGTGTCAT-T-TAATT------------AAGACAAAGCTTTAGAGAGAT-CTGATGCCCAGC-CTGAGATGAT-----------------------CACATTAATGT----ATTGGGGTTTTTTATTTTTAAAA--GTAATTTACTTTTATTAT----AATTTTTTT-----ACTTTTTTCTTTTCTTTTTTCCCCACTAATTAATCTATTTACTTTACATC--TTTACTGCT----GCCTCCTCCATA-CCTCCCTCACACAGTCCCTTCTGATATCCCCCCTCCTGTTCTCCTCTGGAAGGATTGGTCCTCTC-TAGGGTATCCCCGC-----------------------------AATCTCTGCCTGGCTAGGCACATCTTT-CCCACTGAGGCCAGACAAGGCTGCCCATTATGGAGAATGGATTCG-ACAT---ACAGTCAACAGCTCTAGAG----ACAGACAGACCTATCCCCTCTGGTTGACCCTATACTCCATTA--TGCTTGCAGACCTAGCATCACTTGGAACCTAGCA-TCACTGTCCTCTTAGAGGCTCCACCCAGTAGCTGACTAGAAAACATGATTTATTTCTTTTAATCAAGTGTCTCTGTGTCTATCTG-TGTTTGG-GTTTGTGCATATGAGTACAAGAGTCTATGAGCGTCAGGATCCATTTGAACTGGAGTTA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Rattus_HBE -GCCCTTTCTCTAGCTGTCCAGCA-ATCCTGTGTGTCCCCTCTGCC--CTCTTTCTTCACAT------GAGTACTGGAC---TGGTCCTTGAAAGGACAG-CAT--GTTTAATAAAGATCATTCTTCCTGGTAATCAAAAATTCA----TTTTGTCTTGTC--TTTTTTTCTACTTTTATGCT-A--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACGATACCTATTTG---ATGTGTTTGTGGAAG------------AGAGGAA--GACACAGGCATTTCTTCGAAAACTGTA--GGAACTCAATCGAGAAACATAGATGCCATAGAAGGCTTCTATAGG-GCCAAGGAAAGTCTAAAGCTGGGAAAGAGTTCTCAAAGAGAAGAAAGAA------ATTTAGTGGAGAAGGAATTGTG-TATGGAACATATGAAAATTTATTATAGAGGGTGAAGAAAAGGGTGAC--AGGTAATATCTGGCA--TCAG-GTTGTGATAT--CACAT-TACCATT------------AAGGAAAAGCTTTCATGAGAT-CCAAGATCTAAG-ACAGAATTA-------------------------ACATTCTTCT---AAAAAGCATTTATGGGATAACCAA--TTGGTGTGCTCCACCCTGGTGAAGACACTTGCTCCAGCTCTCAGCATCCTGTAGTTGCCTGTAATTCTGTGTGTATGTTTGATGTC--TCATGGGCT----ATCCCCCACCCATTTTAGCAAATGTGCATCACAGCAAACTTCCTGGTCTTTTGGCTCTTACAATCTTTTGTTTTTCTTCTGAAGTATTCCCTGAACTTTAAGTGGGAGAGTCTTTTGTAGATGTATCCACTGGGGTTAGGCTCCAGAACTCTGAAGTTTGAATGATTGTGGATTTCTGTAATTGTCTTCATCTATTGCAA---AGAGTGTTCTTCATGAAAA---AAGACTATAATTTATACATATACGAATACACATAAACATATAT--GCATATACATACATGCA-TACAACAATGACAAAATGGAATGGCAAAAGAAAAGGGAGATATGCTGTAA-CTATTATAATTTCAAAAAGTTTCACAAATTTATTATTT---TAAGTGATGA-CTCTGCATGTATCTCT---ATACTTA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ; end; [HBE and HBG 1kb upstream flanking sequence] #NEXUS begin data; dimensions ntax=20 nchar=1327; format missing=? gap=- datatype=dna ; matrix Cavia_HBE ------------------------------------------------------------------------------------------------------------------------------------------------------ACCCAGAAAGTTACAACTAGT-CCAAAACACAAAGACACTAGAAGAATTAGAATCTTTTGCACTTAAAACTACAACAAATACTAAAAATGCCCCAGCTTCTCACATG---ATT-AACGTATCGATGAACTCGTTC-TTCATTTTGATCACAAATCTTGGTACAAAATAATCTTAGCTTCTTC---CTCAGCTGTCCCACTGCTTAAAAGTATGAGTAAGACAGAAAAGCAAAAAGACATC--TCAGAGTTATATCCCATAAGTAGCCAATTTCTTCTCTTATCACAGAGAAATGGAAAAAACATAATTCTCTGGAAGCACAGGATGTGGTGGTGTTCTATCTACCCTCTCTGAAAAATCACTCTCTGGTAGTCTACTTTGGAATCAGAGTCTTATTTCTATGGCAAATCACTTGGT----ACTGTGCTCCATTTCCACAAGTAACCAT-----GGGCTGTTTTTGTTTTACTTAGAAA-ATATATG----GAA--GTTTATGTTACAAGCCA-GTCTTC-AAGACAGAATCCAAAGAGAT-----------------------TCTGTGTCAACA-GCATTAAATTCTTTATTTCTTGATGT-TGTTC-TTTTCACTGTTAGCATCCTGAACTTAAATGTT----GAAGTTG----TTTGGATTGGAACT--ATTTTTCTATCTTGAAATTAACG--CCTCTCTCCTTG--------GAAAAGGGTG-GCGGGA---TAGATGAGT---ATTAATTATAGTGG-GAGATTTCATGGGGAG--------AGAAGAGAGTGAAA--GAGAGCATAA-TTAT----------GTTGCAGCTGGAGAAGTTTCCAAAA--------------------AAGTAAGGATG-GCTCAGA-----ATTCAGCACACGT---TATCATAAACTCAGTGTGCATTCTTTGCTGCTGACCGTCCTCTGACCAGGCCACACCCATTAGGGACACTGCTCAGCT--TGACCAATGACTT---C----------------AAAGTCCTGG--------GGAAGGGAAGGGGCCAGAACCTCACCAGTAAAGAATAAAAGGCGACAGTTTCCAGGGGCAGTACATATCTGCTTCTGACACTTCTGT----GATCACCAGCA---------AGCTTCTGGACCTAACATC-- Homo_HBB ------------------------------------------------------------------------------------------------------------------------------------------------------------AGAGGAAAAAAATAATCTGAGCCAAGTAG-AAGACCTTTTCCCCTCCTACCCCTACTTTCTAAGTCACAGAGGCTTTTTGTTCCCCCAGACACTCTTGCAGATTAGTCCAGGCAGAAACAGTTAGATGT-CCCCAGTTAACCTCCTATT-TGACACCACTGATTACCCCA-------TTGATAGTCACACTTTGGGTTGTAAGTGACTTTTTATTTATTTGTATTTTTGACTGC-ATTAAGAGGTCTCTAGTTTTTTATCTCTTGTTTCCC-AAAACCTAATA---------------AGTAACTAATGCACAGAGCACATTGATTTGTATTTATTCTATTTTTAGACATAATT-TATTAGCATGCATGAGCAAATTAAGAAAAAC----------------------------AACAACAAATGAATGCATATATATGTAT-----ATGTATGTGTGTATATATACACACATATATATATATAT----TTTTTCTTTTCTTACCAGAAGGTTTTAATCCAAATAAGGAGA---------------------AGATATGCTTAGAACCGAGGTAGAGTTTTCATCCATTCTGTCCTGTAAGTATTTTGCATATTCTGGAGACGCAGG-AAGAGAT----CCATCTACATATCCCAAAGCTGAATTATGGTAGACAAAACTCTTCCACTT--TTAGTGCATCAACTTCTTATTTGTGTAATAAGAAAATTGGGAAAACGATC--TTCAATATGCTTACCAAGCTGTGATTCCAAATATTACGTAAATACACTTGCAAAGGAGGATGTTTTTAGTAGCAATTTGTACTGATGGTATGGGGCCAAGAGATA---------------TATCTTAGAGGGAGGG-CTGAGGGTTTGAAGTCCAACTCCTAAGCCAGTGCCAGAAGAGCCAAGGAC-----AGGTACGGCTGTCATCACTTAGACCTCACCCTGTGGAGCCACACCCTAGGG-TTGGCCAATCTACT---C----------------CCAGGAGCA---------GGGAGGGCAGGAGCCAGGG--CTGGGCATAAAAGTCAGGGCAGAG------CCATCTATTGCTTACATTTGCTTCTGACACAACTGT----GTTCACTAGC----------AACCT-CAAAC-AGACACC-- Mus_Balbc_HBGE ---------------------------------ATTATATAGGAAGATCAAAGAAA----TAGAACTATAATTAGGAAATCAAAACTAGGGATATTTTTCCTAATGTATAATTCTGTCCCAGCTGAGACAGAGTATGTGG------ACTGAATGAAAATATCCCGGCCACTTCTGAGTTATTCTAAAAAACACAAACCATCAAAGACAGATCCTGGTTGAAGCAAACTGAATGATCAGTCATTCAGCATTTTTGGTACATAACTTAATATAGGCACAGAGAAGAC-TAAACCCACACCCTTCTACACTTATCCAGTGGG---TATC-----------ATAGTGCTTAGTGACAG---ACT----ATACATTGCATTCACATGGTGGAAAA-TGCCATGGT-TACATACAGTAGATTCCTCTATATAA---TGTATATTCCAT-----------------AGTGGAG-ACAAACACAGAGACATGTTCTAGTATACCACAGTAA--------------------------------------------------------------------------------------TCTATTCCT-----ACTCAGATACTGCAATGCAATGGGATCTGCTTTCCTGGGACTGTTGGGAACTAGGAAGATCATGGTCTAAACCTACAGAAA------------------------------------------ATGCATGGCTTGTGAGTACAAGGCATATTTCCATAACTTAGGTCCTGAAACCCATAGCTAAAATG----AGCCTCAGGCTCACTGAGGTTTTCCC-C-ATGTTTGCCTGTGCTTCAGCT--TAAATGTA----TTCCTCTATGTCT-TAAATGAAA----AGGAAAAATTGT-GAAAGATACCCTTG-CAAATCTCCTGTTGAG--------GGAAGGGTCTAAACAGAAGGGAGGAAGGAATAA--AAGAGGATGAACACTGGGAAAG--------------------------CTGGAGCAGGAGGC-TCTGCCTCCACGAGGCAGGGGGCCTACTGGACACTATCTTAGT-GCAATGCT---ATCTAGACCTTACCCCAC-TGGACCCCACCCCTGTCTTGCCCAGACTCTC--TTGACCAATAGCCT---C----------------AGAGTCCTGGG-------GAAGGGTAAGGGGAGCAAGGTCCAG-GGTGAAGAATAAAAGAACAGGTCTTCAGCCTCTTGAACATTCTGGCTTCTG-CACACCTGA----GATCATCTCCA---------AGCTTCCAGACCTCACACC-- Mus_Balbc_HBG -----------------------------------------------------------------------------------------------------------------------------------------------------------------------CTCTTCACAGTTAGGTTACAAACACACAAAAAGTGAAAACAGAGCTGAGTTGAAGAAACCTGAAAGCTTGGTCATTCAGTGTTCTCAGTATTTAACCAGTAATGATCATAGAGAAGGC-TAAACTCTCACCCTTT-TCACCAGGCAGCTACACTTATCCTGGG-GGAGGGGGGGGGAATGCCAATTGTATGGTGTCAACACTGTGCATTCAATGGGTGGAAAA-TGTTGTCATGTAAACAG-----ACTTCTCTACTTTA----GTGTAT----------------------GATGG------AATGTGGAGACATGTTGTACTTCTACACAGTAATACATACACACACACACACACACACACACACACACACACATATATATATATGTATATATATACATATACATACATATATATATATATATATTTTTTTTTAACTTAGAAACTGAAATGTATTAGGAATAGCTTTCCTGGGGCTG-TGGGAAATAAGAAGATCATGTCCTAATCCTACTGAAAATGCATTCAATGGTTTT-------GCACACCACGTCTTTGTTATACGTGGCTTGTGAGTAAGATTCATATTTCTGTCACTTAGGTTCATAACCCCATTCCTAAAAAT----AGCCTCTGGCTCACTGAGGCGTTCCC---ATGTTTGCCTATGCTTCAGCT--TAAATGTATTAATCCCTCTAAGTCTGAAGTGAAAA----AGGGAAGAATGT-GAAAGACACCCTTG-CAAATCTCCTGTTGGG--------GGAAGGAGCTAACCAGAAGGAAAGAAGGAAGGA--AAGACGGTGAACTCTGGGAAAG--------------------------CTGCAGTAGACAGC-T---------CGAGGCAGGGGGCCTACTGGACACTATCTTAGT-GCAATGCT---ATCTAGACCTTACCCCAC-TGGACCCCACCCCTGTCTTGCCCAGACTCTC--TTGACCAATAGCCT---C----------------AGAGTCCTGGG-------GAGGGGTAAGGGGAGCAAGGTCCAG-GGTGAAGAATAAAAGGACAGGTCTTCAGCCTCTTGAACATTCTGGCTTTTG-CACACTTGA----GATCATCTCCA---------AGCTTCTAGACCTCACACC-- Mus_Balbc_HBE --------------------------------------------------------------------------------------------------------------------------------------------------CAATACATAGGAGATAGCTAATAATTCCAAGAAGAGAGTAGAAATCAAGCACACTAGCCAT-----CCTTTAGTTATAATAAAC----ACTATCCACAAATGTTTCTCAAGGATATT-GATGAATCAACTCACTCATTC-CTCAGTTGAATCACAA-GCCTAGTTTAAAGTTATTTCAGTTCC-------------ACCTCACATATGAGAAATATCTATATGGGA-TTAAGCAAGGAAAGAGA--TCAAAGCAATATTACTAATGGAG-TAAGGTT---------CACAAAGGTTTGGTCAGAG---AACTCTCTAGAATGACAAAACAAGAACTTGTTATATCCATCTTCTCTACACTGTCACTCCCTGTTGTTGTATTTTGGAATTGAGTCTTCGGACCCATTGTCAATCCTTTGCT----ACTGTATTCATCCTCCAGATGCAACTAT-----GTATGAGTCTTGTCTACTTGGGGCA-ATATATATCTAGGA--AATAGAGTTATAAAGCACATATCC-CAAGAAAAGGAGAAACAGATGTAAT--ATTG-------GCATTTCTGTGTCCACA-GCA-CAAATTCCTTTTTTCATGAGTT-TGTTC-TTATTATTATAGCCATTCTTTCCCTAAACGGT----AAAGTTA---TTTTAGACTGGATTT--TTTTTCCTATAGCGGGCTAAACT--CCTCTTTCTGTGCCTTTGTTGGAAAAAGTG-ATGAGA---GAAATGGGC-------GTTATACTGG-GAGTTTACATGTGGAG--------AGTAGAAAATGAAA---AGAGAATAA-GCAAAACAAAGAGAGTTTTTGTTGAAGGAGGAGCCAAAA-----------------------AAAGAATG-CCTCCAT-----ATCTAATGTGCAT---TATCATAAACACAGTGTACAGTTTT---TGCTGACCCTCCCATGACCTGGCTCCACCCATGAGGACCACGGGTCAGGC--TGACCAATGGCTT---C----------------AAAGAATAAT--------GCAGAACAAAGGGTCAGAACATTGTCTGCGAAGAATAAAAGGCCACCACTTCTAGCAGCAGTACGTACTTGCTTCTGACACTCCTGT----GATCACCAGCA---------ACCTCCCAGACTTGCCATC-- Mus_C57_HBE -----------------------------------------------------------------------------------------------------------------------------------------------------TACGTAGGAGATAGCTAATAATTCCAAGAAGAGATTAGAAATCAAGCACACTAGCCAT-----CCTTTAGTTATAATAAAC----ACTATCCACAAATGTTTCTCAAGGATATT-GATGAATCAACTCACTCATTC-CTCAGTTGAATCACAA-GCCTAGTTTAAAGTTATTTCAGTTCC-------------ACCTCACAGATGAGAAATATCTATATGGGA-TTAAGCAAGGAAAAAGA--TCAAAGCAATATTACTAACGGAG-TAAGGTT---------CACAAAGGTTTGGTCAGAG---AACTCTCTAGAATCACAAAACAAGAACTTGTTATATCCATCTTCTCTACACTGTCACTTCCTGTTGTTGTATTTTGGAATTGAGTCTTCGGACCCATTGTCAATCCTTTGCT----ACTGTATTCATCCTCCAGATGCAACTAT-----GTATAAGTCTTGTCTACTTGGGGCA-ATATATATCTAGGA--GATAGAGTTATAAAGCACATATCC-CAAGAAAAGGAGAAACAGATGTAAT--ATTG-------GCATTTCTGTGTCCACA-GCA-CAAATTCCTTTTTTCATGAGTT-TGTTC-TTATTATTATAGCCATTCTTTCCCTAAACGGT----AAAGTTA---TTTTAGACTGGATTT--TTTTTCCTATAGTGGGCTAAACT--CCTCTTTCTGTGCCTTTGTTGGAAAAAGTG-ATAAGA---GAAATGGGC-------GTTATACTGG-GAGTTTACATGTGGAG--------AGTAGAAAATGAAA---AGAGAATAA-GCAAAACAAAGAGAGTTTTTGTTGAAGGAGGAGCCAAAA--------------------AAGAAAGAATA-CCTCCAT-----ATCTAATGTGCAT---TATCATAAACACAGTGTACAGTTTT---TGCTGACCCTCCCATGACCTGGCTCCACCCATGAGGACCACGGGTCAGGC--TGACCAATAGCTT---C----------------AAAGAATAAT--------GCAGAACAAAGGGTCAGAACATTGTCTGTGAAGCATAAAAGGCCACCACTTCTAGCAGCAGTACATACTTGCTTCTGACACTCCTGT----GATCACCAGCA---------ACCTCCCAGACTTGCCATC-- Mus_C57_HBG ---------------------------------------------------------------------------------------------------------------------------------------------------------------TACCCTGTCTCTTCACAGTTAGGTTACAAACACACAAAAAGTGAAAACAGAGCTGAGTTGAAGAAACCTGAAAGCTTGATCATTTAGTGTTCTCAGTATTTAACCAGTAATGATCATAGAGAAGGC-TAAACCCTCACCCTTT-TCACCAGGCAGCTACACTTATCCTGGGTGGGTGGGTGGGGGCTGCCAATTGTATGGTGTCAACACTGTGCATTCAATGGGTGGAAAA-TGCTGTCATGTACACAG-----ACTTCTCTACTTTA----GTGTAT----------------------GATGG------AATGTGGAGACATGTTGTACTTCTACACAGTAATACAT------------ATATATATATATATGTGTGTGTGTGTGTGTGT-TATAAATATGTGTGTGTGTGTGTGTGTGTATATATATATATTTTT-----ACTTAGAAACTGAAATGTATTAGGAATGGCTTTCCTGGGGCTG-TGGGAAATAAGAAGATCATGTCCTAAGCCTACTGAAAATGCATTCAATGGTTTT-------GCACACCACATCTTTCTTATACGTGGCTTGTGAGTAAGACTCATATTTCTATCACTTAGGTTCGTAACCCCATTCCTAAAAAT----AGCCTCTGGCTCACTGAGGCGTTCCC---ATGTTTGCCTATGCTTCAACT--TAAATGTATTAATCCCTCTAAGTCTGAAGTGAAAA----AGGGAAGAATGT-GAAAGACACCCTTG-CAAATCTCCTGTTGGG--------GGAAGGAGCTAAAGAGAAGGAAAGAAGGAAAGA--AAGACGGTGAACTCTGGGAAAG--------------------------CTGCAGCAGGAGGC-TCTGTCTCTCCGAGGCAGGGGGCCTACTGGACACTATCTTAGT-GCATTGCT---ATCTAGAACTTACCCCAC-TGGACCCCACCCCTGTCTTGCCCAGACTCTC--TTGACCAATAGCCT---C----------------AGAGTCCTGGG-------GAGGGGTAAGGGGAGCAAGGTCCAG-GGTGAAGAATAAAAGGACAGGTCTTCAGCCTCTTGAATACACTTGCTTTTG-CACACTTGA----GATCATCTCCA---------AGCTTCTATACCTCACACC-- Pero_maniculatus_HBE --------------------------------------------------------------------------------------------------------------------------------------ATTAAACACATCCAACATATAACAGCTAACAAGCAATCCCAAGACATGAATAGAAATCAAGGGCACTAACGATCAGAACCTTTGGCTATAACAAAGAATGAATATTCCCAAATGTTTCTCAAGGCCAAT-GATGTGTCAATTAACTCATTC-CTCAGTTGGGTCACAAGGCCTACTTTAAAGTAATTTTAGTTCC-------------ATCTTACAGATGAGAAATGTCTATATGAAA-ATAAGCAAGAAAAGAGC--CCAGAGCAGAATTCCCAAAGGAGCCAAGGTC---------CACAGAGTGTTGGTCAGAG---GAC--TCTAGAAGCACAGAAGGTGAATTTG---CATCCCTCTTCTCTGTGGTGTTACTCCCTAGTGTA---TTTTGGAATTGAGTCTTTGTTCCCATTGTCAGTCCTTTGCT----ACTGTATTCATCTGATAGATGCAACCAT-----ATAGGATTCTTATCCACTTGGGACA-ACACGTATCTAGAA--GATGTAATTTTAATCCACATCTCC-CAAG---AGAAGAACTAGATGTAAA------------------TCTGTGTTCACA-GCA-CAAACTCCTTTTTTCTTGAGTT-TGTTC-TTATCATTGTAACCATTCTTTGTCTAAG-GTT----AAAGTTA---CTTTAGACTTAA-AG--TTTTTCCTATAGTGGGTTAAGCT--CCTCTCTCTGTGCATTTGTTGGAAAATGTG-ATGAGA---GAGATGAGT-------ATTATCTTAG-AAGTTTACATGTGAAG--------GGAGGAGAATGAAA---AGACAATAA-AGTTAA--AAAAAAGTTTTTGTTGAAGGAGGAGCCAAAA---------------------AGAAAGAATG-CC-CCAT-----ATCTAAAATGTAT---TATCATAAACTCAGTGTACAGTTAT---TGCTGACCCTCCCATGACCTGGCTCCACCCATGAGGACCACAGGTCAGGC--TGACCAATAGCTT---C----------------AAAGAATCGT--------GCAGAACAAAGGGCTAGAACATAGTCCGTGAAGAATAAAAGGCCATCACTTTTAGCAGCAGCATGTATCTGCTTCTGGCACTCCTGT----GATCAGCAGCA---------AGCTCCTAGACCTGACATC-- Pero_maniculatus_HBGE -----------------------------------------------------------------------------AGGCACTCTTAGGGATGAAGGTCCTAATGTGTGATTCTGTCCTAGCAGAGGCAGTACATGTGGACTGTTACTGGATGGAAATATCCC-GATACGTC--AGTTATTTTGTGAACACACAAAAAGTGAAGACAGAGCCTGGTTGAA-CAACCTGAAAGGTCAATCACTCAGCATTCTCAGTACTCAACCTGCCACGAGCACAGAGAAGGC-TGAACACACAACCTGCATCACCAGGCAGCTACACTCTTCC-----------AATGGGAATGCCAACTGCATGGTGACTACACAGTCCACTCACAGGGTGGAAAA-GGCTGTCATCTACACACAGCAGATTGCTCTACTTCA---AAGTGA-----------------------AATGGAG-GCAAATGTAGAGACATGCTCTACTACACCACAGTAA--------------------------------------------------------------------------------------TCTATTCTT-----ACTCAGAAACAGAA------------CTGCTTTCCCAAGGCTG-TGGGAACTAGGGAGACCATGGGCTAAACCTATAGAAAATTCATCTGATGG-TCG-------GCACAGCACTTCTTTATCATGCATAGCTTCTGAATAAGGGGCATATTTCTGCCACTCAGGTGCTGGTTCCCAGGCCTAAAGAG----ATCCTCTTACTCTCTGAGGCGTTCCC-TACTGTTTGTCCATGCTTCAGCT--TTAATCTACCGGCCCCTGTAAGGCTAGAGACAGAA----AGGACAGAGTGT-GAAAGATACCCTTG-CAAATCTTCTGTTGGGA-----GCAGAAGGGACTGAAGAAAAGGAAAGAAGGAAAGA--AAGAGAGAAAATACTATGAAAA--------------------------CTTCACCAGGAGGG-TCTCCTCCCATGAGGGAAGGGGCCTACTTGACACTATCTTAGTGGGAATGCT---ATCTACACCTTACTCCAC-TGGACCCCACCCCTGTCTTGCCCAGCCTCTC--TTGACCAATAGCCT---C----------------AGAGTCCTGGGG-----AGGGGGGGAAGGGGTGCAAGGTCCAG-GGTGAAGAATAAAAGGACGGGCCTTCAGCCACTTGAACACACTTGCTTCTA-CACACCTGA----GATCATCTCCA---------AGCCTCTAGACCTGACGCCAT Pero_maniculatus_HBG -----------------------------------------------------------------------------AGTCACTCCTAGGGATGAAGGTCCTAATGTGGGATTCTATCCTAGCAGAGGCAGTACATGTGGACTGTTACTGGATGGAAATATCCC-GATACATCAGAGTTATTTTGTGAACACACAAAAAGTGAAGACAGAGCCTGGTTGAA-CAACCTGAAAGGTCAATCACTCAGCATTCTCAGTACTCAACCTGCCACGAGCACAGAGAAGGC-TGAACACACAACCTGCATCACCAGGCAGCTACACTCTTCC-----------AGTGGGAATGCCAACTGCACAGTGACTACACAGTCCACTCACAGGGTGGAACA-GGCTGTCATCTACACACAGCAGATTGCTCTACTTCA---AAGTGA-----------------------AATGGAG-GCAAATGTAGAGACATGCTCTACTACACCACAGTAA--------------------------------------------------------------------------------------TCTATTCTT-----ACTCAGAAACAGAA------------CTGCTTTCCCAAGGCTG-TGGGAACTAGGGAGACCATGGGCTAAACCTATAGAAAATTCATCTGATGG-TCG-------GCACAGCACTTCTTTATCATGCATAGCTTCTGAATAAGGGGCATATTTCTGCCACTCAGGTGCTGGTTCCCAGGCCTAAAGAG----AGCCTCATACTCTCTGAGGCTTTCCC---ATGTTTGTCCATGTTTCAGCT--TTAATCTACCGGCCCCTGTAAGGCTAGAGACAGAA----AGGACAGAGTGT-GAAAGATACCCTTG-CAAATCTTCTGTTGGGA-----GCAGAAGGGACTGAAGAAAAGGAAAGAAGGAAAGA--AAGAGAGAAAATACTATGAAAA--------------------------CTTCACCAGGAGGG-TCTCCTCCCATGAGGGAAGGGGCCTACTTGACACTATCTTAGTGGGAATGCT---ATCTACACCTTACTCCAC-TGGACCCCACCCCTGTCTTGCCCAGCCTCTC--TTGACCAATAGCCT---C----------------AGAGTCCTGGGG-----AGGGGGGGAAGGGGTGCAAGGTCCAG-GGTGAAGAATAAAAGGACGGGCCTTCAGCCACTTGAACACACTTGCTTCTA-CACACCTGA----GATCATCTCCA---------AGCCTCTAGACCTGACGCC-- Rabbit_HBG -----------------------------------------------------------------------------------------------------------------------ATGTTTTGT-----CTTATAATAAA-AATTGCTGAAAATTTTCCCTGGCATTTATCAGAGATAATTTACTCAGAGCCACACTGAGTACAGAAGA--GCAACACC--AATACT--CTGGGTCACCAGTCAGCATACACACTTATCCAGTGGGAAGCACACATTATGT-GGTGCCTACAG------------AGCAAG-ACATTCATGT------GGATGAAAATATATTTTGCTCACGCAGTACAGACATACTTATTTCAAACAGATACAAT-ACATGTAAGTAGAAAATA--AAGTAGATACATGTAA----GTAGA----------------------AAATAAAGTAAGAGTTCAATTCTGTATTATGCTACTTAATACTAA--------------------------------------------------------------------------------------CATATTTAT-----GCATGGAGAGTTATGCTTTATGGGAGTTGTTTTCCCTACACAGTTGTGAATTAGGAATATA-TCTCCTAAAGCCACAAAGGATATATTCACA-A-TCA-------GTATAGGACTTCTCCCCTGG---CCATTCCTAACTGAATG--AGATTTATACTTGTCTCATCAGAAATCTTGGAT-CTGTGCC--------CAAAATTATCTGAATACTTTTC-ATATGTTTGCTTATGCTTTAGCT--ATAATTTGCAGGCATCTATGGTGTTAGTGACTAAAATATAGGAAATGCTGGCAAAAAAAGTCCTAG-ACTATTTAATGGTGAGGAAACAAGAAAAATAGCTAAATAGAAAAATAAATGGGAGAACTCTTTAAAAAAATGAATTGAAAAGGGACAGGA--------CTAACAAAACTTGAGGAGCAGAG-CCCCCTT--------GAGGGGGCCTCTCTGCCACTATCTCAATATATAGTCT---GTGTGAAGCTT-CTCTGCCTAAACCTCACCCCTGCGCTGACCAGCCTTGCC-TTGACCAATAGTCGTTACACAAAAACACTGACCAATAGCCTCAGAGAACACGGCGAAACAAGGGGCCAGATGTCCAGCGAGGAAGAATAAAAGGACGAGCCTTAGAGCAGTTTCACATACTTGCTTCTGAGACATCTGA----GACTATCAGCAAGCTCAGCGAGCTCCTAGACCAGACATC-- Rattus_HBE ---------------------------------------------------------------------------------------------------------GCAGTTAAACACATACACGTTTAGGCTTCTAATTTCAGGTCTAATATTTAAGAGATAGCTAGTAATCCCAAGAAGAGAGTAGAAACTAAGTACACTAGCCAT-----ACTTCACCTATAACAAACACTGACTATTTACAAATGTTTCTCAAGGTTATT-GATGCATCAACTCCCTCATTC-CTCAGTTGGATCACAAGGGCTAGTTTAAAGTTGTTACCGTTTC----------------------ATGTGAAATATGTATATGACA-ATAAGCAAGGAAAGAGC--TCAGAGCAATGTAACCAACGGAGCCAAAATC---------CATAGAGGATTGGTCAGAG---GACTCTCTAGAAGCATAGAACGTGAACTTGTTATATCCATCTTCTCTACAATGTCATTCCCTGTTGTAG--TTTTGA---TGAGTCTTCAGACCCATTGTCAATCCTTTGCT----CCTGTATTCATCTGCTAGATGCAACTAT-----GTATGATTCGCGTCTGCTTGGAGTA-ACATATATCTAGGA--GATATAGTTATAAACCACATATCC-CAAGAAAAGGAGAAGTAGATGTAAT--GTGG-------ACATTTCTGTGTTCACA-GCA-CAAATTCCTTT---------------------------------TTCTTGACCTGAATGGT----AAAGTTA---TTTTAGATTGGAAAG--TTTTTCCTATAGTGGGCTAAGCT--CTTCTCTCTATGC--TTGTTGGAAAATGTG-ACGAGA---GAGCTGAGT-------GTTATACTGG-AAGTTTACAAG-GAAG--------AGTAGAAAATGAAA---AGAGAATAA-GCGAAACAGAGACAGTTTTCGCTG-AGGAGGAGCCAAGA---------------------AGAAAGAAGG-CCTCCAT-----ATCTAATATGTAT---TATCATAAACACAGTGTACAGTTAT---CACTGACCCTCCCATGACCTGGCTCCGCCCATGAGGGCCATGGGTCAGGC--TGGCCAATGACTT---C----------------AAAGAATTGT--------GCAGAACAAAGGGTCAGAGCATTGTCTGTGAAACATAAAAGGCCACCATTTCTAGCAGCAGCATGCACTTGCTTCTGACACTTCTGT----GGTCACCAGCA---------ACCTCCCAGACTTGACATC-- Rattus_HBGE TCTCTCAGACTATATTTTCTTTACTGTCATACCACTATATAGAAGGATCCAAGAAATTATTAGAGCTATTATTAGAAAATAAAACCTAGAGATAATTTTCCTAATGTTTAAGTCTGTCCCAGCTGTGACAAGGCATGTGG------ACTGAATGGAAATATCCCTGCCACTTC---------------------------------CAGAGCCTGGTTGAAGCAATCTGAAAGATCAGTCCTTCAGCTATTTTGGTACTTAAC----CGTTGGCACAAAAAAGGC-TGAACCTGTA--------------------GGA---ATGC-----------ACAGTGCTTAGTGACTG---ACTGCAGAAACAGTGTATACACATGGTGGAAAA-TGCCAT-GT-TACAAACAGTAGATTCCTCCATGTAA---TATATATTTTATAGAACATATACTAGTACAGTGAAG-ATAAATGCAGAAGCATATTATACTATACCACAGTCC--------------------------------------------------------------------------------------TTTATTCCT-----ACTTAGAAACTGCAAAGCAATGGGA-CTGCCTTCCCAGGGCTGTTGGGAACTAGGAAGATCATGGCCTAAATCTACAGAAA------------------------------------------ATACATGGCTTGTGAGTAAGAGGCATATTTCTGTCACTTAAGTCCGAAGTCACAGACCTACAAAG----AGCCTCAGACTCACTGGGGCTTT-CC-C-ATCTTTGTCTATGCTTGAACT--TCAGTCTACTAGTCCCTCTAAGTCT-GAAACAAAA----AGGAAAGATTGG-AAAAGACACCCTTG-CAAATCTCCTGTTGGG--------AGAAGGAACCAAACAGAAAGAAAGAAGGAAAGA--AAGAG--TAAATGCTGTGAAAA--------------------------CTGCAGCAGGAGGG-CTCTTTTTCCC-AGGCAGGGGGTCTACTTGACACTATCTTAGTAGGAATGCT---ATCTAAGTCTTACCCTCC-TGGACCCCACCCCTTTCTTTCCCAGCCTGTT--TTGACCAATAGTCT---C----------------AGAGTCCTGGG-------GGAGGGGAAGTGGGGAAAAGTTCAG-GATGAAGAGTAAAAGGACAGGCCTTCAGTCTCTTAAACACACTTGCTTCTG-CACACCTGA----GATTATTTCCA---------AGCTTCTAGACCTCACACC-- Rattus_HBG_T1 ------------------------------------------------------------------------------------------TTCATAATACATAGGACATAATTCTATCCTAGCTGCGATAGTGCATGTGGATGTTACTGCATGGAAATATCACCTGTCACTTCAGAGTTAGGTTACAAACACACAAAAAGTGAAAACAG-GCTG-GTTAAATATACCTGAAAGATTGGTCACTCAGCATTATTAATATTTAACCAGTCATGAGCATAGAGAAGGC-TAAATTCACACCTTTT-TCACCAAGCGGATACACTTTTCCT------------GGGGGCTGCCAATTGCAGGGTGACAGCACAGTTCATTCACGGGGTGGATCA-TGGAAACATGTACATAGAGTAAATTGCTCTGTTTTC----ATGTAT----------------------GAGAGAA-GTAAATGTGGAGACATGCTGTATTTCAACACAGTAA-----------------------------------------------------------------------------GTAT-------TATTT-------ACTCACAAACTGTAATGCATTAGGAATTGCTTTTCTGGGGCTG-TGGATACTAGGAAGATCATAGCCTAAAACTACAGAAAATGCATTCAATGG-TTT-------GCACACCATTTCTTTGTCATTAGTGGCTTGTAAGTAACAGGCATATTTCTGTCACTTATGTCCTAAGTCACAGGCCTACAGAG----ATCCTCAGACTCACTGGGGCTTTCTT---ATCTTTGTCTATGCTTGAACT--TTAATCTACTACTCCATCTAAGTCTGAAATG-AAA----AGGAAAGAATGG-AAAAGATACCTTTA-CAAAT---CTGTTGGG--------AGAAGGGACCAAACAGAAAGAAAGAAGAAAAGA--AAAAGGGTAAATTCCGTGAAAACTGAAAAAAAAAAGAAAAGAAAAAACCTGCAGCTGGAGGG-TCACTTTCTCCGAGGCAGGGGCCCTACTCGACACTATCTTTGTAGGAATGCT---ATCTAAGCCTTACCCTAC-TGGACCCCACCCCTG--------------TC--TTGACCAATAGTCT---C----------------GGAGTCCTGGG-------GATGGGGAAGGGGGGAAAGGTCCAG-GGTGAAGAATAAAAGGACAGGCCTTCAGCCTCTTGAACACACTTGCTTCTG-CACACCTGA----GATCATCTCCA---------AGCTTCTAGACCTCACACC-- Rattus_HBG_T2ps --------------------------------------------------------------------------------------------------------------------------------------------CCAATTTGCTGTTGATATTATTGTAACTGTTTTGTTTTCATTGTTTGAAGCAAGGTCCCCTATAGAACAGGTGATTTTAACTCAATCTGTAACAAAGGATACTTTTCATTGATATTCTTGTACTTCTCCTCTAAAGACATCATCTGTGCTGTTAAAATCATTTAATCTAAGTGGTTAGGTGACAAACC---ACTCTGAAAATAAGCCTTAAACAAAGAGTATGGATAATTTCTTCACTTTCCTTATCTCATTACTGCTAATTTTGGCCATAAAGGCACAAAATCAAA---TATCCAAA--------------------GCTCCAGGCATTATTATCTAGACAGGTCACATTTAGAGAGAAAAGGCCGCTTCCTGTCACATTGACGTAGAAATGTGCA---------------------------------------------------AGACAGACATGAACTACAGATGATTTGTTATGTGCTG----GTGTATCACAGGTGTGGCAGTACAGATGGATCATTATTCAACAGAAATATTAGAAGCTAATTAACTAAATCA-------CTAAAAGTAAATCACTGAAGAGGGCACTTATAGATACAGTAAACAGAATAAAGTTGGCTGTACTGAATAGTAAGATCAGTATTTGAAAGCTCTAGGCTATCCATTATGTGGCCATTCCAATTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTAATTAAGATT---GACAGTTTCTAGCAAATATGCTCTTGCTGGG--------ACAAGGGACTAAGCTCAAGAGAAAAACACGAGA--AAGAAAGACAATTTTTCAAGAG--------------------------CTTCAGCGGTAGGG-TCTCTT---------TGAGAGGCCTAGTTGGCACTATCTTCATGGGAATGCT---ATCTAAAGTTTACCCCAC-TGTACCCCACCC-TGGCTTGCCCAGGCTCCA--TTAACCGATTACTT---C----------------ACAGAACTGGG-------AATGGGGTAAGGGCTAGAAGGCCAGGGGTGAAGAATAAAAAGACAAATCTGGCAGCAGCTGAGCATACTTGCTTGTA-AATACCTTA----AACCTTCTTC----------AAGTTCTTGACAAGACACA-- Spermophilus_HBE --------------------------------------------------------------------------------------------------------------------------------------------------------AACCAAAGCAACAAAT-TTCTCCTGAGGTCATAGAGATGGAAAGACTGAGG--------------ATTCTCTAAAAGCACAGAGTATGATCTTGTTCTGTCCATCCTCTCC-GGGAAGCCACCCAATGTACTT-TGGAACTGGGGCAGTGGCCCCACTGTGGGTTCTTTGATACTGTGT------TCAGCATCCAGAAGTAACCTGGTATGTTTCTTCTC-TCTGGTGAAAACTAAGA-TCCAGA--AATATCAGT------------------------TGCAAT----------------AACTTCTCAACAGAGTAAGAGTTACATGTGTTTTAACTTTCTTCCCCCTTGACT---TCATTGTTGATCACTGTTAACATTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTA--GAGAGAGAGAGAGAGAGAGAGAGAGAGAG-----AGAGAGAGAGAGAGAAATTTTTTTA-GTATTTATTTTTCA--GTTTTTGGTGAACACAACATCTTTATTTTTTTTTTATGTGGTATTGAGGATCTAAA-------TCAGCGCTCCACGCATGTCAGGCAAGCACATTACCACTTGAGCCACATCC-CCAGCCCTGTCAACATTCTTAAACTAAATATT----AAACTTTTTTCTTTTAACTGAAACTTATTTTTTCCATCTTGGGCTTAGTT--CCTCTCAGTGGGTCTTTCTTGGAAAAAGCAGATAAGAGATGAAAAAGAT---GGGTATTATCCTGG-AAGATTACATGTGGAG--------AAAAGAATCCAAGG-ATAAGAAATAAGTTAAAAACCATGCTGTGGTTGGATGAGAAGAAAAAAAAA---------------AAAACCAGTAAAGATA-TCTGAGG-----ATCCAGCATGCAT---GGTCACAAACTCACAGTGGATTCTTCAGGGCTGTCCCTCTCCTGTTCTGGCTCCGCCCATGAGGGCCACAGCTCAACC-TTGACCAATGACTT---C----------------AAGGAACTGC--------AGAGAACAAGGGGCCCGTGTTTCAGCAGTGAAGAATAAAAGAC-GTGACTCCTAGCCGCAGAACATACTTGCTTCTGACACTTCGGT----AATCACCAGCA---------AACTCCCAGACCTGACATC-- Spermophilus_HBG -----------------------------------------------------------------------------------------------------------CTGACTCTATAGTTGTTTTGCAAACACTTAGAGAAGG-CAAAGGAGGTGATTCCTAGTACTATGTCTTAGAATAAAACTGGCTGACACTATTTGAAAGATAAATCAT-GCAAGGTCATAATACCTACCAGGAGACCTCCCACCACTCTTCACTGAGCATAGAAAAGCTACCCCCAGAC-CCTGGCTCAAC------------AGCCAGCACCCGCTTAT-----CCAGTGGGAATGCATATT----ACCTGGTAACTACACAATGCATTGACAGGGAATCAA--AAATGTTTGCTCAAAGTA--GACATGCTTTAT-TTA----TTTTA----------------------GACTGAAGCTAGGGTTCAGTCCCATGTTGTGTTACACAACACTAA--------------------------------------------------------------------------------------TGTATTTCT-----GCACTAAAACTGATGCTTTACAGAAATCATTTCCCTAGAACAATTGTGAACTAGGGAGACAGTGGCCTAAACCCATAAAGAATGTATTCAAAGA-TCA-------ATATAGCACTTTTCCCTTGGAAACCATTCCTACCTGTATG--ACATTTATATTTGCTCCATCGGAGATACTAAACATTGTGCT----AAAATAAGAATCTCCTAATAACTGAA-TTTTTTACATTGGTGTCTATACT--TTAACCTCTAGGCTTCTCTGAAACTAGAGACAAAAACATAAAAAAGGCTGG-AAAGGAAGACCCAG-AACATTCTCTGACAAGAGAA--GGAAAACTAGCTA-----AAGAATAAAAAGGAAAA---TTGAAACAATTGACTTGAAACAGCAGAAAG-----ACCCTAAAAAAATGTTAGCAGTGAAA-TTCCTTT--------GAGGGGGCCTCCCTAGCACTATCTTAACAT---GGTT---GTCTGAACCCTGCCCTGCTCAAACCACACCCCCTGTGTGACCAGCCTTGCCTTTGACCAATAGCCTTTGT-------TATTGACCAATAGCCTCAGGATATGTGGTGAGTCAAGGGGCCACAGCGTGGGGGATGAAGAATAAAAGGACGTGCCTTCTAGTAGTCTT---CAGTTGCTTCTGAAGCATCTGA----GATTATCGATA---------AGCTCCTAGACCAGACACC-- Rabbit_HBE ------------------------------------------------------------------------------------------------------------------------TAAATGTGGATTTACAGTTTTGTCTCCAACATGCAAAGAATTA--GCCAGT--CATCACATCAGGGGGCTTCAAAAACAAGGGC-------------ACTTAGAAGAATTTGAACCTCTACCCTGGTGACTACAGCACACACTAGACAAATCAATTAACTTATTC-CTCAGTTTGATTATAAATCCTGGGTTTAAATAATTTTAGTGTC---------ATCTGCCTCATGGATTA-AAGTATAAGTAGAGCAGACAAGCCAAAAAAGAGA-GTCAGGGAAATATC---------------------------CCTGGAG---------------TGCTCTCTGTAAGCACAGGAGATAACCTTGC--TGTCTGTCCTGTCTAGGAAATCACTCCTAG--ACTGTACTTTGGAATTGAGTCTT-AGTCCTACTGCAGATCCCTTGTC----ACTCTCTTCAGCTTCCAGGAGTAACCAT-----GCATGGCCCCTGTCTCATGGAAAAA-CTAAGATCTCAAAAGTGTTTGCAGTTCACTCAGGGAAGCT-CAAGTGGATGATGTTCTGCCTCAACCACTTT-------CATTTTTTGTGTGTGTGTGTGCTGTGTTGCTTTGTTTTC---CT-TGACC-TTCTTTTTGTCACCAACCTTGACCCAAATA-T----GAAACTA---CTTTAGCCCTAA--C--ACTTTCCAGTCTTATGCTTAGCT--GCTCTCTATGAATCTTTCTTGGAAAAGGGGAATGGGA---ATGATGGAT-------GCCATCTTGGAAAGATTACATGGAAAA--------AGAAGAGAGTGAAA--ACATCGATAATGTATGACAAATTGTGTTCTGCTTGGAGGAGGAACCAACA--------------------GAGTAGGGATG-TCTCACG-----ATCCGAAAGCCAT---TATCACAAACTCAGTGAACCAC------CACTGACCATCTGGTGGCCTGGCTCCACCCATGAAGGACACATTCCAGTC-TTGACCAATGACTT---C----------------AAAGTATGAA--------AGAGAACAAGGGGCCAGACCATCAGCAGTGGGGAATAAAAGGCCAAGCCTTGAAGCAGCAGCACAAAGCTGCTTCTGACACATTTGTGATCGATCACCAGCA---------AGCTCCCAGACGTGACACC-- Pero_leucopus_HBE --------------------------------------------------------------------------------------------------------------------------------------ATTAAACACATCCAACATATAACAGCTAACAAGCAATCCCAAGACATGAGTAGAAATCAAGGGCACTAACGATCAGAACCTTTGGCTATAACAAAGACTGAATATTCCCAAATGTTTCTCAAGGCCAAT-GATGTGTCAATTAACTCATTC-CTCAGTTGGGTCACAAGGCCTACTTTAAAGTAATTTTAGTTCC-------------ATCTTACAGATGAGAAATGTCTATATGAAA-ATAAGCAAGAAAAGAGC--CCAGAGCAGAATTCCCAAAGGAGCCAAGGTC---------CACAGAGTGTTGGTCAGAG---GAC--TCTTGAAGCACAGAAGGTGAATTTG---CATCCCTCTTCTCTATGGTGTTACTCCCTGGTGTA---TTTTGGAATTGAGTCTTTGTTCCCATTGTCAGTCCTTTGCT----ACTGTATTCATCTGATAGATGCAACCAT-----ATAGGATTCTTATCCACTTGGGACA-ACACGTATCTAGAA--GATGTAATTTTAATCCACATCTCC-CAAG---AGAAGAACTAGATGTAAA------------------TCTGTGTCCACA-GCA-CAAACTCCTTTTTTCTTGAGTT-TGTTC-TTATCATTGTAACCATTCTTTTCCTAAG-GTT----AAAGTTA---CTTTAGACTTAA-AG--TTTTTCCTATAGTGGGTTAAGCT--CCTCTCTCTGTGCATTTGTTGGAAAATGTG-ATGAGA---GAGATGAGT-------GTTATCTTAG-AAGTTTACATGTGAAG--------GGAGGAGAATGAAA---AGACAATAA--GTTAA--AAAAAAGTTTTTGTTGAAGGAGGAGCCAAAA---------------------AGAAAGAATGGCC-CCAT-----ATCTAAAATGTAT---TATCATAAACTCAGTGTACAGTTAC---TGCTGACCCTCCCATGACCTGGCTCCACCCATGAGGACCACAGGTCAGGC--TGACCAATAGCTT---C----------------AAAGAATCGT--------GCAGAACGAAGGGCTAGAACATAGTCCGTGAAGAATAAAAGGCCATCACTTTTAGCAGCAGCATGTATCTGCTTCTGGCACTCCTGT----GATCAGCAGCA---------AGCTCCTAGACCTGACATC-- Pero_leucopus_HBG -----------------------------------------------------------------------------------TCTTAGGGATGAAGTTCCTAATGTGGGATTCTGTCCTAGCAGAGGCAGTGCATGTGGACTGTTACTAGATAGAAATATCCC-GATACGTCAGAGTTATTTTGTGAACACACAAAAAGTGAAGACAGAGCCTGGTTGAA-CAACCTGAAAGGTCAATCACTCAGCATTCTCAGTACTCAACCTGCCATGAAAACAGAGAAGGC-TGAACCCACAACCTGCATCACCAGGCAGCTACACTCTTCC-----------AGTAGGAATGCCAACTGCATGGTGACTACACAGTCCACTCACAGGGTGGAAAA-GGATGTCATCTATACACAGCAGATTGCTCTACTTCA---AAGTGA-----------------------AATGGAG-GCAAATGTAGAGACATGCTCTACTACACCACAGTAA--------------------------------------------------------------------------------------TTTATTCCT-----ACTCAGAAACAGAA------------CTACTTTCCCAAGGCTG-TGGGAACTAGGGAGACCATGGGCTAAACCTATAGAAAATGCATCCGATGG-TCGATGGTCTGCACACCACTTCTTTATCATGCATAGCTTCTGAATAAGGGGCATATTTCTGCCACTCAGGTGCTGGTTCCCAGGCCTAAAGAG----AGCCTCGTACTCTCTGAGGCTTTCCC---ATGTTTGCCCATGTTTTAGCT--TTAATCTACCGGCCCCTGTAAGGCTAGAGACAGAA----AGGACAGAGTGT-GAAAGATACCCTTG-CAAATCTTCTGTTGGGA-----GGAGAAGGGACTGAAGAAAAGGAAAGAAGGAAAGA--AAGAGAGAAAATACTATGAAAA--------------------------CTTCCCCAGGAGGG-TCTCCTCCCATGAGGGAAGGGGCCTACTTGACACTATCTTAGTGGGAATGCT---ATCTACACCTTACTCCAC-TGGACCCCACCCCTGTCTTGCCCAGCCTCTC--TTGACCAATAGCCT---C----------------AGAGTCCTGGGG-----AGGGGGG-AAGGGGTGCAAGGTCCAG-GGTGAAGAATAAAAGGACGGACCTTCAGCCTCTTGAACACACTTGCTTCTA-CACACCTGA----GATCATCTCCA---------AGCCTCTAGACCTGACGCC-- ; end; [HBE and HBG cds] #NEXUS begin data; dimensions ntax=21 nchar=444; format missing=? gap=- datatype=dna ; matrix Cavia_HBE ATGGTGCATTTTACCACTGAGGAAAAGAGCATCATCAATGCCCTGTGGGGCAAAGTCAATGTGGAAGAGACTGGAGGCGAAACCTTGGGAAGGCTCCTTGTTGTGTACCCCTGGACTCAGAGATTCTTTGACAACTTTGGCAACTTGTCTTCTCCCTCTGCCATCATGGGCAACCCCAAGGTCAAGGCCCATGGCAAGAAGGTGCTGACCTCCTTCGGAGAAGCCATTAAGAACCTGGACAACCTCAAGGGCACCTTTGCTAAGCTGAGTGAACTGCACTGTGACAAGCTGCATGTGGATCCTGAGAATTTCAGGCTCCTGGGTAATGTGCTCCTGATTGTTCTGGCCACTCACTTTGGCAAGGAATTCACCCCTGATGTGCAGGCTGCCTGGCAGAAACTGGTGTCTGGAGTTGCCATTGCTCTGGCCCACAAGTACCACTGA Homo_HBB ATGGTGCATCTGACTCCTGAGGAGAAGTCTGCCGTTACTGCCCTGTGGGGCAAGGTGAACGTGGATGAAGTTGGTGGTGAGGCCCTGGGCAGGCTGCTGGTGGTCTACCCTTGGACCCAGAGGTTCTTTGAGTCCTTTGGGGATCTGTCCACTCCTGATGCTGTTATGGGCAACCCTAAGGTGAAGGCTCATGGCAAGAAAGTGCTCGGTGCCTTTAGTGATGGCCTGGCTCACCTGGACAACCTCAAGGGCACCTTTGCCACACTGAGTGAGCTGCACTGTGACAAGCTGCACGTGGATCCTGAGAACTTCAGGCTCCTGGGCAACGTGCTGGTCTGTGTGCTGGCCCATCACTTTGGCAAAGAATTCACCCCACCAGTGCAGGCTGCCTATCAGAAAGTGGTGGCTGGTGTGGCTAATGCCCTGGCCCACAAGTATCACTAA Mus_Balb_HBE ATGGTGAACTTTACTGCTGAGGAAAAAACCCTCATCAATGGCCTGTGGAGTAAGGTCAATGTTGAAGAGGTTGGTGGTGAAGCCTTGGGAAGGCTTCTTGTTGTGTACCCATGGACCCAGAGATTCTTTGACAGCTTTGGGAACTTGTCCTCTGCCTCTGCCATAATGGGCAACCCAAGGGTCAAAGCCCATGGCAAGAAGGTGCTGACTGCTTTTGGAGAGTCCATTAAGAACCTAGACAACCTCAAGTCTGCCTTGGCCAAGCTCAGTGAACTGCACTGTGACAAGCTACATGTGGATCCTGAGAACTTCAAACTCTTGGGTAATGTGCTGGTGATTGTTTTGGCTAGTCACTTCGGCAATGAATTCACAGCTGAGATGCAGGCTGCCTGGCAGAAGCTGGTGGCTGGGGTGGCCACTGCGCTGTCCCACAAGTACCACTGA Mus_Balb_HBG ATGGTTCACTTCACAGCTGAGGAGAAGGCAGCTATCACAAGCATCTGGGATAAAGTGGACTTGGAAAAAGTTGGAGGAGAAACTCTGGGAAGGCTCCTGATTGTTTACCCATGGACTCAGAGATTCTTTGACAAGTTTGGAAACCTCTCTTCTGCCCTGGCCATCATGGGAAACCCCCGGATTAGAGCCCATGGCAAGAAAGTGCTGACATCCTTGGGCTTGGGGGTTAAGAACATGGACAACCTCAAGGAGACCTTTGCTCATCTCAGTGAGCTGCACTGTGACAAGCTTCATGTGGATCCTGAGAACTTCAAGCTCCTGGGCAACATGTTGGTGATTGTCCTTTCTACTCATTTTGCCAAGGAATTCACCCCAGAGGTGCAGGCTGCCTGGCAGAAGCTGGTGATTGGAGTGGCCAATGCTCTGTCCCACAAGTACCATTAA Mus_Balb_HBGE ATGGTTCATTTCACAGCTGAGGAGAAGGCAGCTATCACAAGCATCTGGGATAAAGTGGACTTGGAAAAAGTTGGAGGAGAAACTCTGGGAAGGCTCCTGATTGTTTACCCATGGACTCAGAGGTTCTTTGACAAATTTGGAAACCTCTCTTCTGCCCAAGCCATCATGGGTAATCCCAGAATCAAAGCCCATGGCAAGAAAGTGCTGACATCCCTGGGCTTGGCAGTTAAGAACATGGACAACCTCAAGGAGACCTTTGCTCATCTCAGTGAACTGCACTGTGACAAGCTTCATGTGGATCCTGAGAACTTCAAGCTCCTGGGTAACATGCTGGTGATTGTTCTTTCTTCTTACTTTGGCAAGGAATTCACAGCTGAGGCGCAGGCTGCCTGGCAGAAGTTGGTGGTTGGGGTGGCCACTGCTCTGTCCCACAAGTACCACTGA Mus_C57_HBE ATGGTGAACTTTACTGCTGAGGAAAAGACCCTCATCAATGGCCTGTGGAGTAAGGTCAATGTTGAAGAGGTTGGTGGTGAAGCCTTGGGAAGGCTTCTTGTTGTGTACCCATGGACCCATAGATTTTTTGACAGCTTTGGGAACTTGTCCTCTGCTTCTGCCATAATGGGCAACCCAAGGGTCAAAGCCCATGGCAAGAAGGTGCTGACTGCTTTTGGAGAGTCCATTAAGAATCTAGACAACCTCAAGTCTGCCTTGGCCAAGCTCAGTGAACTGCACTGTGACAAGCTACATGTGGATCCTGAGAACTTCAAACTCTTGGGTAATGTGCTGGTGATTGTTTTGGCTAGTCACTTCGGCAATGAATTCACAGCTGAGATGCAGGCTGCCTGGCAGAAGCTGGTGGCTGGGGTGGCCACTGCGCTGTCCCACAAGTACCACTGA Mus_C57_HBG ATGGTTCACTTCACAGCTGAGGAGAAGGCAGCTATCACAAGCATCTGGGATAAAGTGGACTTGGAAAAAGTTGGAGGAGAAACTCTGGGAAGGCTCCTGATTGTTTACCCATGGACTCAGAGATTCTTTGACAAGTTTGGAAACCTCTCTTCTGCCCTGGCCATCATGGGAAACCCCCGGATTAGAGCCCATGGCAAGAAAGTGCTGACATCCTTGGGCTTGGGGGTTAAGAACATGGACAACCTCAAGGAGACCTTTGCTCATCTCAGTGAGCTGCACTGTGACAAGCTTCATGTGGATCCTGAGAACTTCAAGCTCCTGGGCAACATGTTGGTGATTGTCCTTTCTACTCATTTTGCCAAGGAATTCACCCCAGAGGTGCAGGCTGCCTGGCAGAAGCTGGTGATTGGAGTGGCCAATGCTCTGTCCCACAAGTACCATTAA Mus_C57_HBGE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTCCTGGGTAACATGCTGGTGATTGTTCTTTCTTCTTACTTTGGCAAGGAATTCACAGCTGAGGTGCAGGCTGCCTGGCAGAAGTTGGTGGTTGGGGTGGCCACTGCTCTGTCCCACAAGTACCACTGA Pero_leucopus_HBE ATGGTGAACTTCACTGCTGAGGAAAAGGGTCTCGTCAATGGCCTGTGGAGTAAGGTGAATGTGGAAGATATTGGTGGTGAAGCCTTGGGAAGGCTTCTCGTTGTGTACCCATGGACCCAGAGATTCTTTGACAGCTTCGGAAACTTGTCCTCTGCCTCTGCCATAATGGGCAACCCAAGGGTCAAAGCCCATGGCAAGAAGGTACTGACTTCTCTTGGAGATGCCATTAAGAACCTAGACAACCTCAAGTCTGCCTTGGCTAAGCTCAGTGAGCTGCACTGTGACAAGCTACATGTGGATCCTGAGAACTTCAAGCTCTTGGGCAATGTGTTGGTGATTGTTTTGGCTGGTCACTTCGGCAAGGAATTCACGCCTGAGATGCAGGCTGCCTGGCAGAAGGTGGTGGCTGGGGTGGCCAACGCTCTGTCCCACAAGTACCACTGA Pero_leucopus_HBG ATGGTTCACTTCACAGCTGAGGAGAAGGCAGCTATCACAAGCATATGGGATAAAGTGGACGTGGAAAAAATTGGAGGAGAAACCCTGGGAAGGCTCTTGATTGTCTACCCATGGACTCAGAGATTCTTTGACAAATTTGGAAACCTCTCTTCTGCCCCGGCCATCATGGGTAACCCCAGAATCAGAGCCCATGGCAAGAAAGTGCTGACATCCCTAGGCTTAGCGGTTAAGAACATGGACAACCTCAAGGAGGTTTTTGCTCATCTGAGTGAGCTGCACTGTGACAAACTTCATGTGGATCCTGAGAACTTCAAGCTCCTGGGAAACATGCTGGTGATCGTCCTTTCCACTCATTTTGTCAAGGAATTCACTCCTGAGGTGCAAGCTGCCTGGCAGAAGCTGGTGATGGGTGTGGCCAATGCTCTGTCCCACAAGTACCATTAA Pero_maniculatus_HBE ATGGTGAACTTCACTGCTGAGGAAAAGGGTCTCGTCAATGGCCTGTGGAGTAAGGTGAATGTGGAAGATATTGGTGGTGAAGCCTTGGGAAGGCTTCTCGTTGTGTACCCATGGACCCAGAGATTCTTTGACAGCTTCGGGAACTTGTCCTCTGCCTCTGCCATAATGGGCAACCCAAGGGTCAAAGCCCATGGCAAGAAGGTACTGACTTCTCTTGGAGAAGCCATTAAGAACCTAGACAACCTCAAGTCTGCCTTGGCTAAGCTCAGTGAGCTGCACTGTGACAAGCTACATGTGGATCCTGAGAACTTCAAGCTCTTGGGCAATGTGTTGGTGATTGTTTTGGCTGGTCACTTCGGCAAGGAATTCACACCTGAGATGCAGGCTGCCTGGCAGAAGGTGGTGGCTGGGGTGGCCAACGCTCTGTCCCACAAGTACCACTGA Pero_maniculatus_HBG ATGGTTCACTTCACAGCTGAGGAGAAGGCAGCTATCACAAGCATATGGGATAAAGTGGACGTGGAAAAAATTGGAGGAGAAACCCTGGGAAGGCTCTTGATTGTCTACCCATGGACTCAGAGATTCTTTGACAAATTTGGAAACCTCTCTTCTGCCCCGGCCGTCATGGGTAACCCCAGAATCAGAGCCCATGGCAAGAAAGTGTTGACATCCCTAGGCTTGGCAGTTAAGAACATGGACAACCTCAAGGAGGTTTTTGCTCATCTGAGTGAGCTGCACTGTGACAAGCTTCATGTGGATCCTGAGAACTTCAAGCTCCTGGGAAACATGCTGGTGATCGTCCTTTCCACTCATTTTGTCAAGGAATTCACTCCTGAGGTGCAAGCTGCCTGGCAGAAGCTGGTGATGGGTGTGGCCAATGCTCTGTCCCACAAGTACCATTAA Pero_maniculatus_HBGE ATGGTTCACTTCACAGCTGAGGAGAAGGCAGCTATCACAAGCATATGGGATAAAGTGGACGTGGAAAAAATTGGAGGAGAAACCCTGGGAAGGCTCTTGATTGTCTACCCATGGACTCAGAGATTCTTTGACAAATTTGGAAACCTCTCTTCTGCCCCGGCCATCATGGGTAACCCCAGAATCAGAGCCCATGGCAAGAAAGTGTTGGCATCTCTAGGCTTGGCGGTTAAGAACATGGACAACCTCAAGGAGGTTTTTGCTCAACTGAGTGAGCTGCACTGTGACAAACTTCATGTGGATCCTGAGAACTTCAAGCTCCTGGGTAACATGCTGGTGATTGTTCTTTCTTCTCACTTTGGCAAGGAATTCACCGCAGAGGTGCAGGCTGCCTGGCAGAAGTTGGTGGCTGGTGTGGCCAATGCTCTGTCCCACAAGTACCACTGA Rabbit_HBE ATGGTGCACTTTACTCCTGAGGAAAAGTGCATTATCAGTAAGCAGTGGGGCCAGGTGAACATCGATGAGACTGGAGGTGAAGCTTTGGGCAGGCTCCTTGTTGTCTACCCCTGGACCCAAAGATTCTTTGACAACTTTGGCAACTTGTCCTCTTCCTCTGCCATCATGGGAAACCCCAAGGTCAAGGCACATGGCAAGAAGGTGCTGACCTCCTTTGGAGATGCCATCAAGAACATGGACAACCTTAAGGGTGCCTTTGCTAAGCTGAGTGAGCTGCACTGTGACAAACTGCATGTGGATCCTGAGAACTTCAAACTCCTGGGAAACGTGCTGCTGATCGTTCTGGCCACTCATTTTGGCAAAGAATTCACTCCGGAGGTGCAGGCTGCTTGGCAGAAGCTCGTGTCTGGTGTTGCCATTGCTCTGGCCCACAAGTATCACTGA Rabbit_HBG ATGGTTCATTTCACGGCTGAGGAAAAGGCTGCTATCACAAGCACATGGAAGCTGGTGGACGTAGAAGATGCCGGAGCAGAAGCCCTCGGAAGGCTCCTGGTCGTCTATCCTTGGACCCAGAGATTCTTCGATAGCTTTGGAAACCTGTCCTCTTCCTCTGCCATCATGGGAAACCCCAAAGTGAAGGCCCATGGCAAGAAGGTGTTGACTGCCTTTGGAGATGCTGTAAAGAATGTGGATGATCTCAAAAACACATTCGCCCACCTGAGTGAGCTGCACTGTGACAGGCTGCATGTGGATCCCGAGAACTTCAAACTCTTAGGAAATGTGCTAGTAATTGTCTTGGCGAAGTATTTTGGCAAGGAATTCACTCCCCAGGTCCAGAGTGCCTGGCAGAAATTGGTGGCTGGAGTGGCCACTGCCCTGGCCCACAAGTATCACTGA Rattus_HBE ATGGTGAACTTTACTGCTGAGGAAAAGAGCCTCATCAATGGCCTATGGAGTAAAGTGAATGTTGAGGAGGTTGGTGGTGAAGCCTTGGGAAGACTTCTCGTTGTGTACCCATGGACCCAGAGATTCTTTGACAGCTTTGGGAACTTGTCCTCTGCCTCTGCCATAATGGGTAACCCAAGAGTCAAAGCCCATGGCAAGAAGGTGCTGACTGCTTTTGGAGAAACCATTAAGAACCTAGACAACCTCAAGTCTGCCTTGGCCAAGCTCAGTGAACTGCACTGTGACAAGCTACATGTTGATCCTGAGAACTTCAAACTCTTGGGTAATGTGCTGGTGATTGTTCTGGCTAGTCACTTCGGCAATGAATTCACGGCTGAGGTACAGGCTGCCTGGCAGAAGTTGGTGGCTGGGGTGGCCACTGCTCTGTCCCATAAGTACCACTGA Rattus_HBGE ATGGTTCACTTCACAGCTGAGGAGAAGGCTGCTATCATAAGCATATGGGAAAAAGTGGACTTGGAAAAACTTGGAGGAGAAACCCTGGGAAGGCTCCTCATTGTATATCCATGGACTCAGAGATTCTTTGACAAGTTTGGAAACCTCTCTTCTGCTCCGGCCATCATGGGTAATCCCCAGATCAGAGCCCATGGCAAGAAAGTGCTGGTGTCCCTAGGCTTGGCAGTTGAGAACATGGACAACCTCAAGGAGACCTTTGCTCATCTGAGTGAGCTGCACTGTGACAAGCTTCACGTGGATCCCGAGAACTTTAAGCTCCTGGGTAACGTGCTGGTGATTGTTCTTTCTTCTTACTTCGGCAAAGAATTCACAGCTGAGGTGCAGGCTGCCTGGCAGAAGCTGGTGGCTGGGGTGGCCACTGCTCTGTCCCACAAGTACCACTGA Rattus_HBG_T1 ATGGTTCACTTCACAGCTGAGGAGAAGGCTGCTATCATAAGCATATGGGAAAAAGTGGACTTGGAAAAAATTGGAGGAGAAACCCTGGGAAGGCTCCTGATTGTTTACCCATGGACTCAGAGATTCTTTGACAAATTTGGAAACCTCTCTTCTGCTCTGGCCATCATGGGTAACCCCCGGATCAGAGCCCATGGCAAGAAAGTGCTGACGTCTCTAGGTTCGGCAGTTGAGAACATGGACAACCTCAAGGAGACCTTTGCTCATCTGAGTGAGCTACACTGTGACAAGCTTCATGTGGATCCTCAGAACTTCAAGCTCCTGGGCAACATGTTGGTGATTGTCCTTTCTACTCATTTTGCCAAGGAATTCACCCCAGAGGTGCAGGCTGCCTGGCAGAAGCTGGTGATGGGTGTGGCCAATGCTCTGTCCCACAAGTACCATTAA Rattus_HBG_T2 ATGAATCATTTCACCTGTGAAGAGAAGGCAGCCATCAAGAGCATCTGGGAAAAGGTAAATGTGGCAGACGATGGAGCAGAAGCCCTGACAAG-CTCTTGGTTGTCTACCCATGGACTCAGAGGTTCTTTGAAAGCTTTGGAGACCTCTCTTGTCCCTCAGCCACTATGAACAACCCCAAAGTCAAAGCTCATGGCAAGAAAGTGCT-------------------ATTAAGAGTATGGACAACCTCAAGAAGGTCTTTGCTCATCTGAGTGAGCTACACTGTGACAAGCTTCACGTGGACCCTGAAAATTTCAAGCTCCTGGGTAACATGATCGTTATTGTTCTGTCTAGTTGCTTTGGGGATGCATTCACCCCCATGGTGCAAGCTTCCTGGCAGAAGATGGTGAATAATGTGGCCAGTGCTCTGGCCCCCAAGTATCACTGA Spermophilus_HBE ATGGTGCATCTAACTGCTGAGGAGAAGAACCTTATCTCTAGCCTGTGGGGCAAATTGAATGTGGAAGAGACCGGAGGTGAAGCCTTGGGCAGGGTCCTTGTTGTCTACCCTTGGACCCAGAGATTCTTTGACAGCTTTGGCAACATGTCCTCTCCCTCTGCCATCATGGGTAACCCCAGGGTCAAGGCCCATGGCAAGAAGGTGCTGACTTCCTTTGGAGAGGCCATTAAGAACCTAGACAACCTCAAGGGTACCTTTGCTAAGCTGAGTGAGCTGCACTGTGACAAGCTGCATGTTGATCCTGAGAACTTTAAGCTCCTGGGTAACGTGCTGGTGATTGTTCTGTCTGCTCACTTTGGCAAGGAGTTCACCCCTGAAATGCAGGCTGCCTGGCAGAAGCTGGTGTCTGGTGTTGCCAATGCTCTGGGCCACAAGTACCACTAA Spermophilus_HBG ATGGTTCATTTCACAGCTGAGGATAAGGCTGCTATCACAAGCATGTGGAGAAAAGTGAATGTGGAAGAAGCTGGAGGAGAAACTTTGGGAAGGCTCCTAGTTGTCTATCCCTGGACCCAGAGGTTCTTTGACAGCTTTGGAAACCTGTCCTCTGCCTCTGCCATCATGGGTAACCCCAAGGTCAAGGCCCATGGCAAGAAGGTTCTGACTTCTTTGGGAAATGCTTTAAGGGACATGGATGACCTCAAGGGTGCCTTTTCCCAGCTGAGTGAGCTGCACTGCGAAAGGCTGCATGTGGATCCTGAGAACTTCAGGCTCCTGGGAAACATGCTTGTGATTATTATGGCAAAACATTTTGGCAAGGAATTCACCCCCGAGATGCAGGCTTCCTGGCAGAAAATGGTGGCTGGAGTGGCCAGCGCTCTGGCCCACAAGTATCACTGA ; end; [HBE and HBG 1kb downstream flanking sequence] #NEXUS begin data; dimensions ntax=21 nchar=1569; format missing=? gap=- datatype=dna ; matrix Cavia_HBE GCTCGTTTCTGCAGTCTGCCAGCA-CTCCTGTGTGCCCCCGATACC--CTCCTTCTGCTCAT------GGGGACTGGGA---TGGGCCTTAAAAGTACAA-CTTCTTTTCAATAAAAATTATTCTCTTCAGTTATCAAACATTGAT--GTTTTGTTTTCTC--CATCTT-TTACCCTTGTATTAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGGGAAAGCATTCATG---------GGCTGAAGGGTGTTGCAGTGTAGGAA--GAAATGAAAGAACCTTTCAGAAGCATGCAGGAACTCATCAACATA-----CTTGTCAGTGGAAGATC-----------------------AAAATGGGGAGGATGCTCTATC----CAGAGCAAGGGTTAGTTAAGCAGGCAGAGATGTGTG-GGGCAATGCGGCAAAAAC-TGCTGCAGAGAG-GAAAAAGGATGAGCC--TGGTGGAAACTGAGAAAGCAAAGATGTGATCAATGCCAAGTTTCATTAA----AAATAAAATGCAAAATCTTTGCAGGAT-TTGAGGTCTAAACG-AAGATTACTAA----TATAAAT---------CATTCTAATAT-ACGTTTTGAAGCAGCTACCTTGCC----ATGGCTTTTGAGATTGACTTGGAGATAAGGAGATAAGTTAAGGGAGTTTTTCTGAGTTTTGCAGAAAAA---GTCCACATGACTTA--ACAATAGCT-----TGCTCTTTTCCAAAGGGTCCTTTTGTCTTTTTTTTTCTTTGACACGAAGTCTCACTTTGCAGTTCAGGATGGCCTT--GAACTCACTTTGTAGTC----------------TAGGCTGACCTTGTGCTCACAGTG-ATCCGCGTGCCG-CAGCCTCCT-GAGGGCTGGGATTGCAGGTGTGTGTCACCATGCCCAGCT----GGGGAGCCAAGAATAAAACACATGGAATCGCTGTGCATCATCTGGAAGAATGTAGCACGCACTAAAATAAAATTAGAGTTAATATACAAGGAATAACCTT----TTTGGA-GGCAGTGA-TAAAAACGA-TGTAGGAGATAAAAGTCTATATGAATAGTAACAAGGCTTGTAGTTTAAGACCAATGA-GATTGGGCATGATGACCTGCATGAAATTTCCTCC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Spermophilus_HBE ACCCGCCTCCCTATT-CACCAGTG-CTCCCGTGTGTCCCCAGTACC--CTCCTTCTGTACAT------GGGGACTGAGC---TCAGCCTTGAAAGCATAG-CTTCTGCTTAATAAAACA---TTTCTTCAGTAATTCAAAATTGAAAAGTTTTGTCTTCTC--CATTTT-TTACTCTTTTGTACT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAGAAG---------------------------TAGGAAGAGACATAGGAA--GAAACGAGAGTTTCTTTGAGAAGTGTATAGAGACACATAAAGTCAAGC-ATATATTATTAAAAGATC--------------AAGGACACTAAGATGGGGAAGAATTTCTATGGGTATGGGGAAATGGTGAGTTAAGTCAGCAGGGACTTGTG-GGATAGGGTGGCAAAAACTTGCTATAGAGGG-GAAAAAGGAAGTGGT--AAATGATACCCAAGAAAGCAGATTTGTAGTACAAGCCAAATTTCATTAACATCAACAATAATAATAAAGTCTTCTGGGAT-CTGAGGTCTAGG-ATAGGATAACTAT----TTTAATT---------TATTCTAATAT-CCACCTTGA-GCAGCTAAATTGTCAA--ATGTGATATGAAACTGTTTTAGAGGTATGGGGTTGAATTGAGTGA-TGACTGAGCACTTTCTAGAATAA---GTTCCCATGATTCA--ACAATAGCT-----TGCTCTTTT-------------TTATCCTAATGGAGCACCGTGGCTAAGACACATGAAATAATTGTACATTATATTCTGATAGAATATAGCACAC----------------TAAAATGAAGTTAAAATTACTATATATGTGGGGACAT-TGGGGGATGAGGAGATGAAAACTTTATGTAGGAGAAATCTACATGAATACTTCAAGGCTCATGGTCTAAAACCAACAAGTCAGGGATTGGTGACTTGCATGAAACTGCCTCTTTGAAA-----GGAGAGTATCAGCAAAGACCCAATAGTGCAAGAACTTGAC-TATAAAAA-TACAAGCTATTGCTGCACCTGGTGGTGCACACCTGTAATCCCAGGAACTCTGGAAGCTGAGAGAGGAAGATCACAAGTTAAAGGCAGACCTCAGCAACTTATTG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Homo_HBB -GCTCGCTTTCTTGCTGTCCAATTTCTATTAAAGGTTCCTTTGTTCC-CTAAGTCCAACTACTAAACTGGGGGATATTATGAAGGGCCTTGAGCATCTGG-ATTCTGCCTAATAAAAAACATTTATTTTCATTG-----CAATGATGTATTTAAATT-------ATTTC-TGAATATTTTACTAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAGGGAATGTGGG-----AGGTCAGTGCATT----TAAAACATAAAGAAA-----TGAAGAGCTAGTTCAAACCTTGGGAAAATAC-----ACTATATCTTAAACTCCATGAAAGAAGGTGAGGCT--GCAAACAGCTAATGCACATTGGCAACAGCCCCTGATG-------CATATGCCTTATTCATCCCTCAGAAAAGG--------ATTCAAGTAGAGGCTTGATTTGGAGGTTAAAGTTTTGCTATGC----TGTATTTTACATTACTTATTGTTTTAGCTGTCCTCATGAATGTCTTT-----TCACTACCCATTTGCTTATCCTGCATCTCTCAGCCTTGACTCCACTCAGTTCTC------------------TTGCTTAGAGATACCACCTTTCCCCTGAAGTGTTCCTTCC-ATGTTTTACGGCGAGATGGT--TTCTCCTCGCCTGGCCACTCAGCCTTAGTTGTCTCTGTTGTCTTATAGAGGTCTACTTGAAGAAGGAAAAACAGGGGTCATGGTTTGACTGTCCTGTGAGCCCTTCTTCCCTGCCTCCCCCACTCACAGTGACCCGGAATCTGCAGTGCTAGTCTCCCGGAACTATCACTCTTTCACAGTCTG-------CTTTGGAAGGACTGGGCTTAGTATGAAAAGTTAGGACTGAGAAGAATTTGAAAGGCGGCTTTTTGTAGCTTGATATTCACTACTGTCTTATTACCCTGTCATAGGCCCACCC--CAAATGGAAGTCCCATTCTTCCTCAGGATGTTTAAGATTAGCATTCAGGAAGAGATCAGAGGTCTGCTGGCTCCCTTATCATG-TCCCTTATGGTGCTTCTGGCTCTGCAGTTATTAGCATAGTGTTA-CCATCAACCACCTTAACTTCATTTTTCTTAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Mus_Balbc_HBE -GCCCTCTCTCTAGCTGTCCAGCA-ATCCTGTGTGTCCGCTATGCC--TCCTCTCTGCACAT------GAATACTG--C---TGTTCCT--GAAGCACAT-CAT--GTT-AATAAAGCACCTCCG-------AATCAAAA--TCG-----TTTG-CTTGTC--TGCTTT-CTACTTT-ATGCT-A--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGACACATATTTG----TGTATTTGTGGAAAAAGGGGGAATGCACAGGAAATGACTCAGGCATTTATCTGAAACCTGCA--GGGACTCAAGAGAGAAACGTAGACGCCATGGAAGGCTTCTACA---CCCAGAGAGAGTCTAAAGCTGA-AAAGAATTCTCAGAGAGAAGAAAGAA------ATTTAGTGGAGAAGGCATTGTG-TATGGAACATATGAACATTTACTGTAGAGGGTGAAGAAAAGGGTGAC--AAGTGATACCTTGCA--GCAG-GTTGTGACAT--CCCAT-TACCATT------------AAGAAAAAGCTCTTACGAGAT-CCAAGAGCTAAG-ATAGAATTA-------------------------ACTTTCTTTT---AAAAAGCATTTATTGGGTAACCAA--TTGGTGTGATCTGCCCCGGGGAAGACTCTTGATCCAGCTCTCAGCAACCCTTAGTTGACTATAATTCTTTGTGTATGGTTGAGGTC--TCATCGGCTTTATTTACCCCACCCATATTAGCAAATGTGTATCACAGCAAGCTTCATGGTCTTTTGGCTCTTACAATCCTTTTCCCTTCTTCTGAAGTGTTCCCTGATCCTTAGGTG-----------TGTAGATGTATCCACTGAGGTTAGGCTCCACAACTCTGAAGTTTGAATGGTTGTGGATTTCTGTACTGGTCTTTGTCTATTACAA---AGAGTGTTCTACATGAGAGGAGAAGACTACAACTTATACATACACACACACACACACACACACAC--ACATACATACAATTACAATGGCAAAATGACACGATTT--TGAAAGGGAGCAAGGAGGGTATACAGAGG-GTTTGGAGGGAGAAAAGAAAAGGGTGATGTGTTTTAAC---CATATTATAA-TTTCAAAAACAGTTTT---AAAAATTTATTGTTTTAAGT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Mus_C57_HBE -GCCCTCTCTCTAGCTGTCCAGCA-ATCCTGTGTGTCCGCTATGCC--TCCTTTCTGCACAT------GAATACTGGAC---TGTTCCTTGAAAGCACAT-CAT--GTTTAATAAAGATCATCCTTCCTGGTAATCAAAAATTCAG---TTTTGTCTTGTC--TGCTTT-CTACTTTTATGCT-A--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGACACATATTTG---ATGTGTTTTTGGAAA---GGGGGAAGCACAGGAA--GACTCAGGCATTTATCTGAAACCTGCA--GGGACTCAAGAGAGAAACGTAGAAGCCATGGAAGGCTTCTACAGG-CCCAGTGAGAGTCTAAAGCTGAGAAAGAATTCTCAGAGAGAAGAAAGAA------ATTTAGTGGAGAAGGCATTGTG-TATGGAACATATGAACATTTACTGTAGAGGGTGAAGAAAAGGGTGAC--AAGTGATACCTTGCA--GCAG-GTTGTGACAT--CCCAT-TACCATT------------AGGAAAAAGCTTTTACAAGAT-CCAAGAGCTAAT-TTAGAATTA-------------------------ACTTTCTTTA---AAAAAGCATTTGTTGGGTAACCAA--TTGGTGTGCTCTGCCCCGGGGAAGACTCTTGATCCAGCTCTCAGCAACCCTTAGTTGACTGTAATTCTTTGTGTATGGTTGAGGTC--TCATGGGCTTTATTTACCCCACCCATATTAGCAAATGTGTATCACAGCAAGCTTCATGGTCTTTTGGCTCTTACAATCTTTTGCCCTTCTTCTGAAGTGTTCCCTGATCCTTAGGTG-----------TGTAGATGTATCCACTGAGGTTAGGCTCCACAACTCTGAAGTTTGAATGGTTGTGGATTTCTGTACTGGTCTTTGTCTATTGCAA---AGAGTGTTCTACATGAGAGGAGAAGACTACAACTTATACATATACACACACACACACACA--------CATACATACAATTACAATGGCAAAATGACACGATTT--TGAAACATGGGGAGGGGGCAACATTGGAG-ATGTAAAGTGAATTAATTAGTGGG-GAAAAAAGAAAAT---AAAAAAGTAA-AAA-AAAAATCATAAT---AAAAGTAAATT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Mus_Balbc_HBGE --GCCCTTTCCCTGATGTCCAGCA-TT-CTGTACACCCCTCA--GC--TCTGCCCTACCCAT------GGCCACTGTGC---TGGTCTCTGAAAGCAGGG-CTTCTGCTTAATAAAGTCCATTCTTTTCAGTAAACCATGAGTCAT--ATTTTGTTGTGTC--TGTTTC-TTACTTTTGTGTTTA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGAAAGAAGGCCG---ATGGGCAGATGGTAA---GGGAGCGAGACAGAAG--GACACTTGAGTTTCTTTTAGAACTTTGCTGGAATTCAGGAGAGGAA-GTAGATGTTACAGAATTTTTCTAGAGC-CCCAGGAAAGATGAAAAGTTGG-GGATAATTCTCATGTAGGAAAGCAAAGGGTTAATGCCGTGGAGAAAAAAGTTC--TGTGGTAGTCACTAAAACTTAGTGTAGAGGGTGAAGAAATGCACGAC--AAATGATCACCTA-----CAG-TCTGTGTTATGTGCCAT-T-TAATT------------AAGTTAAA-CTGTAGACAGAT-CTAATGCTCAAC-CTGAGATAAT-----------------------CAGTTAAAT------------------TCTTTTAAAAA--ATAATTTGCTTTTATTAT----GATTTTTTTTTTTTACTTTTTTGTTTTCTTTTTTCCCCACTAATTAAT----TCACTTTACATC--TCCAATGTT----GCCCCCTCCCCATCCCCCCTCACACAATTTCTTCTCACATCCTGCCTC---TTCTCCTCTGAAAGGGTTGATCCCCTCCTAGGGTACCCCCCCCCCC---------CAACCCTGGCATATCAACTCTCTTCCTGACTAGGCACATCTTTTCCCACTGATGTCAGACAAGGCCATCCACTTAGGGGAATTGATTCTGACAG---ACAGTGAACAGCTTTAGAG----ACAGACAGGCTTATATTCTCCAGTTGTTGGGGGAACC--------ACGAGAAGATTGAGCTACATATCTACTCCATAT-GTGCTGGGACCT-AGGTTCAGCGTGCATAAGCT--CTTTGATTGGTGGTACAGTCTCTGAGAACCCCCAACA--GTCCAGGTTAG-TTACTCT-GTTGGTCTATCTGTG---GAGTTCCTATCCCC-TTAGGGTCCCTCTATCC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Mus_C57_HBGE --GCCCTTTCCCTGATGTCCAGCA-TT-CTGTACACCCCTCA--GC--TCTGCCATACCCAT------GGCCACTGTGC---TGGTCTCTGAAAGCAGGG-CTTCTGCTTAATAAAGTCCATTCTTTTCAGTAACCCATGAGTCAT--ATTTTGTTGTGTC--TGTTTC-TTACTTTTGTGTTTA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGAAAGAAGGCTG---ATGGGCAGATGGTAA---GGGAGCGAGACAGAAG--GACGCTTGAGTTTCTTTTAGAACTTTGCTGGAATTCAGGAGAGGAAAGTAGATGTTACAGAATTTTTCTAGAGC-CCCAGGAAAGATGAGAAGTTGG-GGATAATTCTCATGTAGGAAAGCAAAGGGTTAATGCCGTGGAGAAAAAAGTTC--TGTGGTAGTCACTAAAACTTAGTGTAGAGGGTGAAGAAATGCATGAC--AAATGATCACCTA-----CAG-TCTGTGTTATGTGCCAT-T-TAATT------------AAGTTAAA-CTTTAGACAGAT-CTAATGCTCAAC-CTGAGATAAT-----------------------CAGTTTAAT------------------TATTTTAAAAA--ATAATTTACTTTTATTAT----GATTTTTTTT----ACTTTTTTATTTTCTTTTTTCCCCACTAATTAAT----TCACTTTACATC--TCCAATGTT----GCCCCCTCCCCATCCCCCCTCACACAATTTCTTCTCACATCCTGCCTC---TTCTCCTCTGAAAGGGTTGATCCCCTCCTAGGGTATCCCCGCCCACACACACA--CAACCCTGGCATATCAACTCTCTTCCTGACTAGGCACATCTTTTCCCACTGAGGTCAGACAAGGCCATCCACTTAGGGGAATTGATTCT-ACAG---ACAGTGAACAGCTTTAGAG----ACAGACAGGCTTATATTTTCCAGTTGTTGGGGGAACC--------ACAAGAAGATTGAGCTACACATCTGCTACATAT-GTGCTGGGACCT-AGGTTCAGCGTGTATAAGCT--CTTTGATTGGTGGTACAGTCTCTGAGACCCCCTAACA--GTCCAGGTTAG-TTACTCT-GTTGGTCTTTCTGTG---GAGTTCCTATTCCC-TTAGAGTCCCTCTA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pero_maniculatus_HBE -----GCCCTCTACCTGTCCAGCA-ATCCTGTGTGTCCCCTACTAC--ATCTTTCTGCACAT------GAGAAATGGAC---TGATCCTTGAGAACACAG-ATT--GTTTAATAAAGATCATTCATCCCAGTAATCAAAAAGTCAT---TTTTGTTTTGTC--TGTTTT-TTACTTCAGTGCT-A--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGAAAAATGTTTG---ATGGGTTTGTGGTAG----AGGGGAATACAGGAA--GACACGCGAGTTTCTCTGAAAACTGGA--AGGACTCAAGAGAGGAGAGTAGATGCCATTGAAGGCTTCTACTGG-CCCAGGGAGAGCCTATAGCTGGGAAAGAATTCTCAAAGAG-----------------------GAGAAGGAATTGTG-TGTGGAACATATAGAAACTTACTGTAGAGGGTGAAGAAAAGGATAA--------GTATCTAATG--GCAG-GTTGTGACATATCCCAT-TTCAATT------------AAGAAAAAGCTTT--AGAGAT-CCAAGATCTAAG-ATAGGATTATTAT----TTTAAATTACTTAATGTACTTTTTTTTTCCTAAAAGGATTTATTGGATAACCAA--TTAGTATGCTCTTCCCTGAGGAAGACTATTTCCCCAGCTCTCAGCATTCTTTAGTTGCCTGTAATTCTTTGTGTGTGGTTGAAATC--TCATTGACT----TTCTCCTATCGATGTTAG----TGTGTCCCACAAGAAACTCCTTGATCCTCTGGCTCTTACAATCTTTTGTTCCTCTTCTGCAGTGTTCCCTGAGCCTTAGGTGTGGGAGTGTTTTGTAAATGTATTCACTGGAACTGGGTTCCACAACTCTGCATTTTGATTGGTGGTGGATTTCTGTAGTGCTCTCCATCTATTGCAA---AGAGAGG-CTCCCTGAATG---AGGGGTGAAGATTACACTTACATATACATGTATGCA-----------ATA---ACAATTAAAGACAAAAGAAGACATAAATT--TGAA-GAGAGAAAGGAAAGTATATAGAAGAGTTTGGATAGAGGAAAGAAAAGTGAGATATGTTGTAAC---TATATCACAA-TTTCCAAAATGTTTTTTAAAAAGATTTATTATTTTA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pero_maniculatus_HBGE -GCCCCCTTTCTTGATGAGCGGCA-CTGCTGTGCACCTCTCA--GG--CTCATCTTACACAA------GACCACCTTGT---TGGGATTTGAAACTTGAG-CTTCTGCTTAATAAAGTCCGTTCTCTTCAGTAACCC--GAGTCAT--GCTTTGTTGTGTG--TGTTTC-TTACTATTGTGTT-A--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGAAAGAAGGTTG---ATGGGTGCATGGTAG---TCAAGAGGTGCCACAG--GACACCAGAGTTTCTTTGAAAACTGTATCGGGACTCAGAAGAGGAAGGTAGATGTTATGGGACTTTTCTAGGGT-GTCAAGGAGGATGAAGAGTTGA-GAAGAATTCTCATGTAGGAAAGCAAAGGGTTAATTAACTGGAGAATGAATTGT--GCTGACAGTTGCTAAAACTTAGTGCAGAGGGTGAAGAAAAGCATGGC--AAGTGATGACCTG-----CAG-GTTGTGATATGTGTCTT-T-TCATT------------AAGATAAAGCTTTAGATAGAT-CTAATGTCTAAG-CTGAGATAATG----------------------CACTCAGAT-------------TTTTTATTTTTAAGAA--ATGATTTACTTTATTTTT----AATCATGTGTCTCTGTGTCTGTCACTGTTTGGTTTTGTGCATGTGAGTGCA-AGAGTCTATGGCAGCTAGAAGCT----CAGGTCCCACTGGAACTGGAGTTACAGGTGGTTGTGACTGCCTGCCATGAGTGCTGGGAACTGAACTCAGTTCCTCTGAGAGTGTATGTACTCTTA-----------AACACTGAGCCATC--ATCTCTCCAGGTTCAAGTGTACATTTTCCAGCAGATACTTTATCAGG-TGTCCTCT----GAAGCTGATTGC--AAG---AAAACGGACAAATTGATAG----AGAGCAGTGACCATTTAAGACAATGTTTCAATAAAACCAC----CATAGCAGGCTTGCGTTTTGAAGGAATTCCTTGTCTCAATGGTGAATCAAAGCTAGGAGACAC-AGTTCACTGTAATTTTCTGTAGGGCTGTAATGAGCAATGAGATGGTGATAGAGAAA-GGACAGAAGTAGAACCTTGTCAGGTCAAGTGGGGACGATG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pero_leucopus_HBE -----GCCCTCTACCTGTCCAGCA-ATCCTGTGTGTCCCCTACTAC--ATCTTTCTGCACAT------GAGAAATGGAC---TGATCCTTGAGAACACAG-ATT--GTTTAATAAAGATCATTCATCCCAGTAATCAAAAATTCAT---TTTTGTCTTGTC--CATTTT-TTACTTCAGTGCT-A--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGAAAAATGTTTG---ATGGGTTTGTGGGAG----AGGGGAATACAGGAA--GACACCTGAGTTTCTCTGAAAACTGGA--AGGACTCAAGAGAGGAGAGTAGATGCCATTGAAGGCTTCTACTGG-CCCAGGGAGAGCCTATAGCTGGGAAAGAATTCTCAAAGAG-----------------------GAGAAGGAATGGTG-TGTGGAACATATAGAATCTTACTGTAGAGGGTGAAGAAAAGGATAA--------GTATCTAATG--GCAG-GTTGTGACATATCCCAT-TTCGATT------------AAGAAAAAGCTTT--AGAGAT-CCAAGATCTAAG-ATAGGATTATTAT----TTTAAATTATTTAATGTACTTTTTTTT-CCTAAAAGGATTTATTGGATAATCAA--TTAGTATGCTCTTCCCTGAGGAAGACTATTTCCCCAGCTCTCAGCATTCTTTAGTTGCCTGTAATTCTTTGTGTGTGGTTGAAATC--TCATTGACT----TTCTCCTATCGATGTTAG----TGTGTCCCACAAGAAACTCCTTGATCCTCTGGCTCTTACAATCTTTTGTTCCTCTTTTGCAGTGTTCCATGAGCCTTAGGTGTGGGAGTGTTTTGTAAATGTATTCACTGGAACTGGGTTCCACAACTCTGCATTTTGATTGGTGGTGGATTTCTGTAGTGCTCTCCATCTATTGTAA---AGAGAAG-CTCCCTGAATG---AGGGGTGAAGATTACACTTACATATACATGTATGCA-----------ATA---ACAATTAAAGACAAAAGAAGACATAAATT--TGAAAGAGAGAAAGGAAGGTATATAGAAGAGTTTGGATAGAGGAAAGAGAAGTGAGATATGTTGTAAC---CATATCACAA-TTTCCAAAATGGTTTTTAAAAAGATTTATTATTTTA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Rabbit_HBE ACTCTCTTCCCAGTTTCTTTAGTG-CCCCTACTCATCCCCAGCGTC--CTCCTTCTGTACCTT-----GGGGACTAGGC---TCAGCCTTGATGGCACAG-TTTCTGTTTAATAAAATACATTCTATTCAGTAATCAAAAAATGAT--GTCTCATCTTCTT--CGTATT-TTACTCATGTGTTTA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAAAAAAAAACCACACATGTTCATGATTGAGACAGAGAGAGACATAGGAA--GAAATAAGAAT--CTTTGAGTAGTATATTAGGATTTATCAAATAAAGGGAGGTGTTATTGGAGGGTACAGGAGAATCCAGAGAGGACACCAAGATGGGGAAGAAGTTCTCTTGGGTGGGGCAAAGGCTTCATTAAGT------GGACTG--------AGTGTGGCAAAAACATACGGCAGAGGG-AAGGGAATGAGGGACCAAAGTGGTATCTGCGAAATCAGATTTATGGTGAATGTTG--TTTCACT-----------CAAAAGAAAGATTTGTAGTGAT-CAAAACTCTAGACATGGTAATACTAT----TTTAATG---------TACTTGAACAT-ACACATTGAAGAAATTAGCTTGATTT--ATATCTTGAGAAATTGGTTTGAATATAAAGAAATGAGTTAAAGTA-TGAGTTGGAAATTTCCAGAAAAAAATGTTTTCATGAACAA--ACTGCAGTT-----TGTTCTTTCCTGAAGGGTTCTGTTGTCTCAATGGGATGCCAAGACTGAGACATATTACATCATTGTGCATTATCTTCTGATTGAATGCTG---------------------TAAAATAAAGCTAG--TTTCAACACAAATGAAAACTT-TCATGGG---AAAGATAAAGATTTCATGTAGAAAATAAA-ATACTAGCA----AATGTGCCTGGTCCTAAATCAGCAAGGTAAAACTTGGTGTCATAGATGGAACTGGAATTCTGGAAGTAGAGGGGAGTATTAGGAAAGATTAGATAGTGCTGAGCTTTGAC-TATAAAAAATAAAATCTACTACTAGGC-TATTAGCGACAATGAGTTATAA-ATATTCTTAGGATGCTAAGTGACT----CCATGGATAAGA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Rattus_HBE -GCCCTTTCTCTAGCTGTCCAGCA-ATCCTGTGTGTCCCCTCTGCC--CTCTTTCTTCACAT------GAGTACTGGAC---TGGTCCTTGAAAGGACAG-CAT--GTTTAATAAAGATCATTCTTCCTGGTAATCAAAAATTCA----TTTTGTCTTGTC--TTTTTTTCTACTTTTATGCT-A--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACGATACCTATTTG---ATGTGTTTGTGGAAG------------AGAGGAA--GACACAGGCATTTCTTCGAAAACTGTA--GGAACTCAATCGAGAAACATAGATGCCATAGAAGGCTTCTATAGG-GCCAAGGAAAGTCTAAAGCTGGGAAAGAGTTCTCAAAGAGAAGAAAGAA------ATTTAGTGGAGAAGGAATTGTG-TATGGAACATATGAAAATTTATTATAGAGGGTGAAGAAAAGGGTGAC--AGGTAATATCTGGCA--TCAG-GTTGTGATAT--CACAT-TACCATT------------AAGGAAAAGCTTTCATGAGAT-CCAAGATCTAAG-ACAGAATTA-------------------------ACATTCTTCT---AAAAAGCATTTATGGGATAACCAA--TTGGTGTGCTCCACCCTGGTGAAGACACTTGCTCCAGCTCTCAGCATCCTGTAGTTGCCTGTAATTCTGTGTGTATGTTTGATGTC--TCATGGGCT----ATCCCCCACCCATTTTAGCAAATGTGCATCACAGCAAACTTCCTGGTCTTTTGGCTCTTACAATCTTTTGTTTTTCTTCTGAAGTATTCCCTGAACTTTAAGTGGGAGAGTCTTTTGTAGATGTATCCACTGGGGTTAGGCTCCAGAACTCTGAAGTTTGAATGATTGTGGATTTCTGTAATTGTCTTCATCTATTGCAA---AGAGTGTTCTTCATGAAAA---AAGACTATAATTTATACATATACGAATACACATAAACATATAT--GCATATACATACATGCA-TACAACAATGACAAAATGGAATGGCAAAAGAAAAGGGAGATATGCTGTAA-CTATTATAATTTCAAAAAGTTTCACAAATTTATTATTT---TAAGTGATGA-CTCTGCATGTATCTCT---ATACTTA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Rattus_HBGE --GCCCCTTCCCTGACTTCCAGCA-TT-CTGCATATCCC-CA--GC--TCTGTCCTACACAT------GACCACTCTGC---TGGTCTCTGCAAGCAAGA-CTTCTACTTAATAAAGTCCATTCTCCTCAGTAATCCATGAGTCAT--ATTTTGTCCTATC--TGTTCC-TT----TTGTGTTTA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGAAAAAAGACTG---ATGGACAGAAAGGAA---GGGAGAGACACAGAAG------------TTTCTTTGAAAACTGTGTTGGCAGTTAGGAAAGGAGAGTAGATGTTATAGAATTTTTCTGGGGC-CCCAGAAAAGATGAAAAGTTGG-GGA-AATTCTCATGTACAAATGCAAAGTGTTAATTCCCTGAAGAATAAA-TTG--TGTGGCAGCCACGAAAAGCTAGTATATCGGGTGAAGAAAAGCATGGC--AACTGATTGCCTG-----CTC-TCTGTGATATGTGTCAT-T-TAATT------------AAGACAAAGCTTTAGAGAGAT-CTGATGCCCAGC-CTGAGATGAT-----------------------CACATTAATGT----ATTGGGGTTTTTTATTTTTAAAA--GTAATTTACTTTTATTAT----AATTTTTTT-----ACTTTTTTCTTTTCTTTTTTCCCCACTAATTAATCTATTTACTTTACATC--TTTACTGCT----GCCTCCTCCATA-CCTCCCTCACACAGTCCCTTCTGATATCCCCCCTCCTGTTCTCCTCTGGAAGGATTGGTCCTCTC-TAGGGTATCCCCGC-----------------------------AATCTCTGCCTGGCTAGGCACATCTTT-CCCACTGAGGCCAGACAAGGCTGCCCATTATGGAGAATGGATTCG-ACAT---ACAGTCAACAGCTCTAGAG----ACAGACAGACCTATCCCCTCTGGTTGACCCTATACTCCATTA--TGCTTGCAGACCTAGCATCACTTGGAACCTAGCA-TCACTGTCCTCTTAGAGGCTCCACCCAGTAGCTGACTAGAAAACATGATTTATTTCTTTTAATCAAGTGTCTCTGTGTCTATCTG-TGTTTGG-GTTTGTGCATATGAGTACAAGAGTCTATGAGCGTCAGGATCCATTTGAACTGGAGTTA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Rabbit_HBG --ACCCCTTCACTGTAGGACAGAG-CTTCTAGGAAGAAGCTTTATCC-CTCA-AATAATAAT-------GAAAATAATA------AAACTACTCTAAGAA-ATTATTTGTGATGGTATTGAGTTTA--TTTTCCTTGTACTTTTAAATATATGATCCTCAAGGGATTTATTTTTTTTATTGTTGA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGGATGTGTGTGTG----TGTGTGTGTGTGCCTGTGTACTATGTGTGTATA-------------CTCTTCATTTACTTTT---------GCTTGAGCGGTGGATTTCTGATGAGAAAACAGAAGAAC-AAGGCAACAAAAGGGCATGCATGTGAGAATTCTGCACGGGAAACAAGGAGTG---GGGATTTCGGGTGAGGAGGAAGTGCTTTATGGGACAAGAA--TTCAGAACAGGACAGTGTAGAGGAGGGG---ATGAAGTCTTCAGGGAAGTCCTCAGGGGCTGACTTGAGGCAGAGTAGT----------GATG--GGGCTCAATGGAAAGAAGAAATTACAGACCTTAGTAGGTCTAA--GTCTGGGCAAGAGTTCTAATTTCAGTCT----ATTTGGTGCAACACAATTCCCACATGCACCATACTTTCCACAAC---ATTTGTGGGGCTAGATAGGAGGTTGGAGATCTTGAAGAACACAGCAGGGGGTAGTTCTTTTCCAAGTTAACCACAA---ATAGCTGATCC-TGAAGAGATTTATGCTTTAAGTGTTGAGGCTTGCTAGGATAGTTAATTTGATCCCATGCTTCCTGGGCAGACAATGTCCAAGGGTACACATAGAATACAGTACTTCAAGGAAAAAGT----ATCATTGTGAGTAGCTAGAAGGGATGAGTAT---------CTTTGTGGGGG--AAATAAATCATCAG---AA--GGTTAGAAATAAGAA---TGCATGTGATATGTGA----TCAATGGAGCAGCACTGG-GCGGTCAG--AGGGAAACAGGAGGGATTTGTATTGATTAGTTTGCAGTGAAGGTGT-TGTATGACTAAAAG-TTAAT-CCATGTTTATAGGCAGGTGTACAATACAATGACCATGGAAT--TAGGAAGATTAGCCTGGCTGTGG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Mus_C57_HBG AAACTCCATTCCAGTACACTGGCA-ATCCCATGTGTCTATGATGCC--CTCTTTGAGTCCATG------GGGACTG----------CATTGAGAGCACAA-ATTTTGTTTAATAAAATTGATTCT---TAATAA-----CATTGACTTTTTGTTTTTTTTTTGTTTGTTTTTACTTTTATGTT-G--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGAAAGATCTCAA----TGGGCTTGTTGGTG---GGAAAAGACAGAAGAA-----------GAAACCAGATAGAGTGAA------------------------GTATTAGGGAAAGAGCTAAGTT----------------AAAGATGAGAAAGTTTTCTCCAGGAAGAGATGAAAGGGTCTGTTCAGTATAAGATAGGGTACAAAATATTTACTGTGCAAGG-TAAAAAGTAGGGTTGCAGGTGCCAGGAG-GTAAAGAAGACTGGTGAGATGTGCTATTTCT--TTTTTAAGTTTCACTTT--TTGCATATGAGTGAGTGTTTTTCCTGCATAAACATGTGTGTGTCCTACCTGTGTGTGGTGCTCCTGCAAGCCACAATATAGAATTACATCCTCTGGAACTTGAGTTACAGCCAATTGTGAACTGTCAAGTAGGTACTGGGAGCTGAAGTCTGGTCTTTTGAAAGAGCTA---------TTTACCACTGAGCT-CCCTCTCTAGCCC-AAGATCTGCTAGAGATTTTTAAGAGAATACTTTAA--------AATATGAACAAAAAGTATTGTTTTTGATTAGT-TATAT-TTCTGAAAGAGCTATCTTACATCTTGTGAGACTGAGACATTAAAGAAAAGGGGGGAATTGAGTGAAAGTTGGGAACATTCCTGAAAAAAAATTACAGGAGCTACTGTACCTATACT-TTCTTTAGGTATT-TGTAAAGGTTATTCCACTG----GCACAGTGAGAAATAAAGGCTATAGCATCTAGTGGTCCAGATCTTGTAATGGGGTGTAACATGGGCTTACATGAAATTAGCTTACATCTAGCTACTTCAGAAGATA---CACATTTCTAGAGACAAAGAGGAACTAGAGTCAACTTGATAAGAATTTCATCCCACATTCCACTCCATCAAACTGAATCA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Rattus_HBG_T1 -ATTTCCATTCCAGTAGACCAGCA-ATCCATTCTGTCTCTTATACT--CCCTTTGAGCCCATG------GGGACTGGAT---TGGGCATTGAGAGCACAA-ATTTTGTTTAATAAAATTAATTTT---AAATAATTTAACATTGACTTTTTGGGCTTT----GTTTGTATTTACCTTTCTGTT-G--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGAAAGATTATGA----TGGGCTTATTGGTG---GAAAAAGAAGAAGGAA-----------AAAACTAGATAGACTAGATAAACACTAGAGGCAAGGA----TATATTATGGAAAGGGGTAAGTTT---CAAGAAGGATGAAAAGATGAGGAAGTTTTCTCCAGGAA----TGAAAGGGTCTGTTCAGTATAA-ATAGGGTACAAAATATTTACTGTATAAGGGTAAAAACTAGGGTACCAGGTGCCTGG-G-GTAGGGAAGACTAGTGATACATGCTATCTTTGATTTTTAAGTTTCACTTT--ATGGGTATGAG----TGTTTTGCCTGCAT--GTTTGTGTGGGTGCTACATGTGTGTGGGGGTCATGCAGGCCATAACCGATACTCACATGCTCTGGAACTTTAGATACAACCAATTGTGAACTGCCATGTGAATA------------ATCTGGTCCTTTGAAAGATCTA---------TTAACCACTGAGCGACCCTCTCTAGCCT-AAGACCTGCTGGAGAGTTTAAGGAGAGTGCTTTAGGTATCTAGAATATGAACTAAAAGT---GCTTTTAATTAGT-TGCAT-TTTTGAAAGACCTATCTTACATCTTGTGAGACTAAGACATTAAAGTAAAGGGGT-AATTAAATAAAAGTTGGAAACATTCTTGAGAGAG--TTACAGGCCTTACTGTAGCTACATT-TTCTTTAGGTACA-CATGAAGGTTATTTCCCTG----GCATAGTGAGGAATAAAGGCTATGACATTCAGTGTTCCAGATTTTGTAATGGGGTGTAACATGAGCTTACATGAAATGAGCTTTCACTTAGGAGACTAGTAAGAAATGTCAGGATCCTTTGTGAAAAGGGAATATTTCGTGTAAGTGAAGATTATATGATTATA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Rattus_HBG_T2 -ACATTCTTTCCAGTACATTGGCA-CTTCTATGTACCCAAT---CCC-CCCTTTGCCCATGT------GAGGTCTTCAC---TGAAACTTTAGAGTATGATCTTCTCTTTAATAAATTTCATTCTCTTGAGCAACC-AACCCTGGTTTGTTTTGTCCGGTT----TTTAATTAATGTTAAAGCAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGAAATAGATCAG--------TTCACGGGTG---AGAAAAGACTCAGTAT--GAAAGAAGAGCTTTTCTGTACCTTGTGTAGGGACT-GCGGGAATAATGTATAGGTTTGAAAAAAATAGTTG------------------AACACTTGGGGTTAATTCTCATGAGGAAGTGGGCTAGTGGAGAGGAGTTTGACAAGATGTTAA-----AAACTTAAGAACACGTAGTGATAGGGTTAAAAATGAATGTGAAGAAAGAATTATGACACATAATATTGTAGTGGCAGGATTGAGAACTATCCTG----------CCTCACAAAATGCACCGAGACATCTGCTGCTAGTATTGAGCTGTAAGA----------------AAGAAGTTTTGTTAT----TAAAATAATACTGGGAATAAAAACATGATTCTACTAAGGAATCCATGTGTGACTACTGTTAGTCTTTTTATGCTGTTTTAAATACATTTCACCTATGGATTTTTTTCTAATGTTTAAAGAATTCTTTGACAATTTTGATACCCTTCCCTCCACTTCTCCCATATCCATTCCCACTTTCCTACTCTCCCAACCATGTTTCTTCATTAGAAACAAAACAAGACAT-----------------CAGCAACAGCAGCAGC--AGCAGCAACAGCAGCACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGC-AGCAGCAGCAGC--AACAACAACAACAACAAAT----ACCATCAAGTTCATAAACTCTTGGATATGTGACCTTTGACTGGTTGTGGT--CAACCTACCAGGAGTCAGTCACATCC--TTAAAGAAAACTGACTCTAAGATATATCAGTTGTTGATAGCTACTTAACTAGCAATGGGACTTTGTGCCTAAGTCTTCTCTCCATGGCTCTTCATGAGGCAAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Spermophilus_HBG --ACCTCCCACCCATAGTGCAGAA-GATTCAGAGAGAAGCTTTCTTT-TTAATAATAATAAA-------AATAATAAAA------GAATTATTTTAAGAA-ACCTTTTCTGATTACCTTCAGTTCTACTTTTACATGTACTTTTAAATATATAAGCACAAAGGAATTTTATGTT----------A--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGGTTGTGTGTGTG----TATGTGTGTGTG-----------TGTGTATGTG-------------TTCTCCATTTATTTTT---------GCAAGAGATGTAGATTT-TACTGAGAAAATAAAAGAA--------------GGACATGCACATGTGAGTTCCCCAAGGGAAAGCACAGGTGCAGGAGAGCTCTGGTGGGAAGGAAGAGCTCTATGATACAAGGTGTCTCAGAACCAGACAATTTAGAGTAGAGG---AGGAACAATTCAGGGAGGACCCTCAGGGCTAATCTGAGGCACTGTAGC----------AAGAATGGGCTCAATGGAAGAAAATTATTCCAGGC-TTAGGAGGTCAAG--GTTCATGCAGGGGTTGTGATTACATTCT----ATTGGCT----TTTGTTTTTCATA-GCACTA---TTAAAAAAAT---ATTTTTGTAGTTG--TAGTTGGTACAATATCTTTATTTATTTATTTTTATGTGGTGC----CGAGGATCAAACCCA---ATACCTCACACGTGCAAGGAAGTGCTCTACCACTAAGCTACAGCCCTAGCCCCTTTTCATAGCACTTTTTTGGCTAGAGTAGGGGTTGGAAGGGAAAGCTCTTGCCCAAGTCAACTCCAGAGAACTGGCCCTCATTTTTCTGAGGAAATGTATACATTAAGTGTTGGTGTGTGCCTCATGGAGGTTAAATTAGTCCTTAT---GATAGACAATGCCAAAGTG---TGCAAATTATTTGTAGCATGTCAAGGAAAAGAAATTATTATAACCTGCTAGGAGAGGTGGGGATACTTGTGAGGAAAATAAACCAGCAGATCAGTGTGTCTGAGCAAAAGACCAACACTGTGAGAGCAAAAGGAAGTGAGA-AGAATTTATATGGATTAGTTGGGAAGGCAGATTAACAGGAGTTCTCCATATA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Mus_Balbc_HBG --ACTCCATTCCAGTACACTGGCA-ATCCCATGTGTCTATGATGCC--CTCTTTGAGTCCATG------GGGACTGGAT---TAGGCATTGAGAGCACAA-ATTTTGTTTAATAAAATTGATTCT---TAATAA-----CATTGACTTTTTGGGGTTTTTT-GTTCGTTTTTACTTTTATGTT-G--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGAACGATCTCAA----TGGGCTTGTTGGTG---GGAAAAGACAGAAGAA-----------GAAACCAGATAGAGTGAA------------------------GTATTAGGGAAAGGGCTAAGTT----------------AAAGATGAGAAAGTTTTCTCCAGGAAGAGATGAAAGGGTCTGTTCAGTATAAGATAGGGTACAACATATTTACTGTGCAAGG-TAAAAAGTAGGGTTGCAGGTGCCAGGAG-GTAAAGAAGACTGGTGAGATGTGCTATTTCT--TTTTTAAGTTTCACTTT--ATGCATATGAGTGAGTGTTTTTCCTGCATAAACATGTGTGTGTCCTACCTGTGTGTGGTGCTCATGCAAGCCACAATATAGAATTACATCCCCTGAAACTTGAGTTACAGCCAATTGTGAACTGTCAAGTAGGTACTGGGAGCTGAAGTCTGGTCTTTTGAAAGAGCTA---------TTTACCACTGAGCT-CCCTCTCTAGCCC-AAGATCTGCTAGAGATTTTTAAGAGAATACTTTAA--------AATATGAACGAAAAGTATTGTTTTTGATTGGT-TATAT-TTCTGAAAGAGCTATCTTACATCTTGTGAGACTGAGACATTAAAGAAAAGGGGGGAATTGAGTGAAAGTTGGGAACATTCCTGAAAAAAAATTACAGGAGCTACTGTACCTATACT-TTCTTTAGGTATT-TGGAAAGGTTATTCCACTG----GCACAGTGAGAAATAAAGACTATAGCATCCAGTGGTCCAGATCTTGTAATGGGGTGTAACATGGGCTTACATGAAATTAGCTTACATCTAGCTACTTCAGAAGATA---CACATTTCTAGAGACAAAGAGGAACTAGAGTCAACTTGATAAGAATTTCATTCCACATTCCACTCCATCAAACTGA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pero_leucopus_HBG ----------------GCTCCCAT-TCCTAC--AGACCAGCAGTCC-TCTTTTTGAGCACATG------AGGATTGGAC---CAGGCCTTGACAGTACAG-ATTTTGTTTAATAAAGTTGACTTT---CAATAATCTAACATTGG------------------CTTCTTTAAAACTTTATGTT-T--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGGAAGAT--TGG----TGGGCTTATGGGTG---AGGAGAGAAG------------------------GACATATTGAA------------------------GGAGTGTGGTAAGCCTTGAGGAT-------------GAAAAGATGATGAAGAATTCTCAGGGAAGAGAAGAAAGGGTTCATTCAGTATATGGAAGGATATAAAATATTTGCTGTACAAGG-TAAAATCTGGGGTAGTGAGTATTTAGGA-GGAAAGAAGACTAGTGAGACATGCTAAAAA---TTTTTAAGTTTTGCTTT--ATGTGTATGAG----TGTTTTGTGTGCATGTTTGTGTGTGTGTACTACATGTATA-----------CAGACCA--AGAATGGATCACATCCCCTGGAACTGGAGGTACAGCCAGTTGTGAGCTGCCATATGTGTGCTAGGAATTGAAGTCTGGTTCTTTGGATGAGTAACAAATGCCCTTAAACACTGAGCC-CTCTCTCTAGCCCCAAAACATGCTGGAGACTTTAAATAGAAAACCTTATGTATCTAAAAGACAAGCTAGAAGTATTATTTTTAATGAGC-TGTGCATTTTGAAAGAGCTAGCTTATACCTCATGAGACTGATACATTAAAGTAAATGGGG-AACTGAGTGATATGTGGGAACTTTCCTGAAAGAG--TTACAGCAATTACTGTAGCTATACTATCCTTTAGTCATG-TGTGAGTATTACTTCACTG----GCACAGTGAAGAATAATGGCTAAGGCATTCAGTGTTCTGTACCATGTAATGGGATGTAACAAGCCCT-----GAAGTGAGGTTACATTTAGGAGAGGAGTAGTAAATTTGGGGATCATTTGAGAGCAAGGAAGATTTCGTATAAGTGAAGACTGCATGATTATAAGAAGGTCCACACTCTCTAACTACTAAGCATACCTTGGTATCTCGAATAAAGACTACTCAATA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pero_maniculatus_HBG ----------------GCTCCCAT-TCCTAC--AGACCAGCAGTCCCTCTCTTTGAGCACATG------AGGACTGGAC---CAGGCCTTGACAGTACAG-ATTTTGTTTAATAAAGTTGACTTT---CAATAATCTAACATTGG------------------CTTCTTTAAAACTTTATGTT-TGGCTGGGCGGTGGTGGCGCACGCCTTTAATCCCAGCACTCGGGAGGCAGAGCCAGGCCGATCTCTGTGAGTTCGAGGCCAGCCTGGGCTACCAAGTGAGTTCCAGGAAAGGCGCAAAGCTACACAGAGAAACCCTGTCTCGAAAAAACCAAAAAAAAAAAAAAAAAAAACAAAAACAAAAAACAAAAAAAAAAAACCCAACAAAAAACCTTTATGTTTAAGGAAGAT--TGG----TGGGCTTATGGGTG---GGGAGAGAAG------------------------GACATATTGAA------------------------GGAGTGTGGTAAGCCTTGAGGAT-------------GAAAAGATGATGAAGAATTCTCAGGGAAGAGAAGAAAGCGTTCATTCAGTATATGGTAGGATATAAAATATTTGCTGTACAAGG-TAAAATCTGGGGTAGTGAGTATTTAGGA-GGAAAGAAGACTAGTGAGACATGCTAAAAAA--TTTTTAAGTTTTGCTTT--ATGTGTATGAA----TGTTTTGTGTGCATGTTTGTGTGTGT--ACTACATGTGTA-----------CAGACCA--AGAATGGATCACACCCCCTGGAACTGGAGGTACAGACAGTTGTGAGCTGCCATATGTGTGCTAGGAATTGAAGTCTGGTTCTTTGGATGAGTAACAAATACCCTTAAACACTGAGCC-CTCTCTCTAGCCCCAAAACATGCTGGAGACTTTAAATAGAAAACCTTATGTATCTAAAAGACAAGCTAGAAGTATTATTTTTAATGAAC-TGTGCATTTTGAAAGAGCTAGCTTATACCTCATGAGACTGATACATTAAAGTAAATGGGG-AACTGAGTGATATGTGGGAACTTTTCTGAAAGAG--TTACAGCAATTACTGTAGCTATACTATCCTTTAGTCATG-TGTGAGTATTACTTCACTG----GCAC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ; end; [HBE 1kb upstream flanking sequence] #NEXUS begin data; dimensions ntax=8 nchar=1327; format missing=? gap=- datatype=dna ; matrix Cavia_HBE ------------------------------------------------------------------------------------------------------------------------------------------------------ACCCAGAAAGTTACAACTAGT-CCAAAACACAAAGACACTAGAAGAATTAGAATCTTTTGCACTTAAAACTACAACAAATACTAAAAATGCCCCAGCTTCTCACATG---ATT-AACGTATCGATGAACTCGTTC-TTCATTTTGATCACAAATCTTGGTACAAAATAATCTTAGCTTCTTC---CTCAGCTGTCCCACTGCTTAAAAGTATGAGTAAGACAGAAAAGCAAAAAGACATC--TCAGAGTTATATCCCATAAGTAGCCAATTTCTTCTCTTATCACAGAGAAATGGAAAAAACATAATTCTCTGGAAGCACAGGATGTGGTGGTGTTCTATCTACCCTCTCTGAAAAATCACTCTCTGGTAGTCTACTTTGGAATCAGAGTCTTATTTCTATGGCAAATCACTTGGT----ACTGTGCTCCATTTCCACAAGTAACCAT-----GGGCTGTTTTTGTTTTACTTAGAAA-ATATATG----GAA--GTTTATGTTACAAGCCA-GTCTTC-AAGACAGAATCCAAAGAGAT-----------------------TCTGTGTCAACA-GCATTAAATTCTTTATTTCTTGATGT-TGTTC-TTTTCACTGTTAGCATCCTGAACTTAAATGTT----GAAGTTG----TTTGGATTGGAACT--ATTTTTCTATCTTGAAATTAACG--CCTCTCTCCTTG--------GAAAAGGGTG-GCGGGA---TAGATGAGT---ATTAATTATAGTGG-GAGATTTCATGGGGAG--------AGAAGAGAGTGAAA--GAGAGCATAA-TTAT----------GTTGCAGCTGGAGAAGTTTCCAAAA--------------------AAGTAAGGATG-GCTCAGA-----ATTCAGCACACGT---TATCATAAACTCAGTGTGCATTCTTTGCTGCTGACCGTCCTCTGACCAGGCCACACCCATTAGGGACACTGCTCAGCT--TGACCAATGACTT---C----------------AAAGTCCTGG--------GGAAGGGAAGGGGCCAGAACCTCACCAGTAAAGAATAAAAGGCGACAGTTTCCAGGGGCAGTACATATCTGCTTCTGACACTTCTGT----GATCACCAGCA---------AGCTTCTGGACCTAACATC-- Mus_Balbc_HBE --------------------------------------------------------------------------------------------------------------------------------------------------CAATACATAGGAGATAGCTAATAATTCCAAGAAGAGAGTAGAAATCAAGCACACTAGCCAT-----CCTTTAGTTATAATAAAC----ACTATCCACAAATGTTTCTCAAGGATATT-GATGAATCAACTCACTCATTC-CTCAGTTGAATCACAA-GCCTAGTTTAAAGTTATTTCAGTTCC-------------ACCTCACATATGAGAAATATCTATATGGGA-TTAAGCAAGGAAAGAGA--TCAAAGCAATATTACTAATGGAG-TAAGGTT---------CACAAAGGTTTGGTCAGAG---AACTCTCTAGAATGACAAAACAAGAACTTGTTATATCCATCTTCTCTACACTGTCACTCCCTGTTGTTGTATTTTGGAATTGAGTCTTCGGACCCATTGTCAATCCTTTGCT----ACTGTATTCATCCTCCAGATGCAACTAT-----GTATGAGTCTTGTCTACTTGGGGCA-ATATATATCTAGGA--AATAGAGTTATAAAGCACATATCC-CAAGAAAAGGAGAAACAGATGTAAT--ATTG-------GCATTTCTGTGTCCACA-GCA-CAAATTCCTTTTTTCATGAGTT-TGTTC-TTATTATTATAGCCATTCTTTCCCTAAACGGT----AAAGTTA---TTTTAGACTGGATTT--TTTTTCCTATAGCGGGCTAAACT--CCTCTTTCTGTGCCTTTGTTGGAAAAAGTG-ATGAGA---GAAATGGGC-------GTTATACTGG-GAGTTTACATGTGGAG--------AGTAGAAAATGAAA---AGAGAATAA-GCAAAACAAAGAGAGTTTTTGTTGAAGGAGGAGCCAAAA-----------------------AAAGAATG-CCTCCAT-----ATCTAATGTGCAT---TATCATAAACACAGTGTACAGTTTT---TGCTGACCCTCCCATGACCTGGCTCCACCCATGAGGACCACGGGTCAGGC--TGACCAATGGCTT---C----------------AAAGAATAAT--------GCAGAACAAAGGGTCAGAACATTGTCTGCGAAGAATAAAAGGCCACCACTTCTAGCAGCAGTACGTACTTGCTTCTGACACTCCTGT----GATCACCAGCA---------ACCTCCCAGACTTGCCATC-- Mus_C57_HBE -----------------------------------------------------------------------------------------------------------------------------------------------------TACGTAGGAGATAGCTAATAATTCCAAGAAGAGATTAGAAATCAAGCACACTAGCCAT-----CCTTTAGTTATAATAAAC----ACTATCCACAAATGTTTCTCAAGGATATT-GATGAATCAACTCACTCATTC-CTCAGTTGAATCACAA-GCCTAGTTTAAAGTTATTTCAGTTCC-------------ACCTCACAGATGAGAAATATCTATATGGGA-TTAAGCAAGGAAAAAGA--TCAAAGCAATATTACTAACGGAG-TAAGGTT---------CACAAAGGTTTGGTCAGAG---AACTCTCTAGAATCACAAAACAAGAACTTGTTATATCCATCTTCTCTACACTGTCACTTCCTGTTGTTGTATTTTGGAATTGAGTCTTCGGACCCATTGTCAATCCTTTGCT----ACTGTATTCATCCTCCAGATGCAACTAT-----GTATAAGTCTTGTCTACTTGGGGCA-ATATATATCTAGGA--GATAGAGTTATAAAGCACATATCC-CAAGAAAAGGAGAAACAGATGTAAT--ATTG-------GCATTTCTGTGTCCACA-GCA-CAAATTCCTTTTTTCATGAGTT-TGTTC-TTATTATTATAGCCATTCTTTCCCTAAACGGT----AAAGTTA---TTTTAGACTGGATTT--TTTTTCCTATAGTGGGCTAAACT--CCTCTTTCTGTGCCTTTGTTGGAAAAAGTG-ATAAGA---GAAATGGGC-------GTTATACTGG-GAGTTTACATGTGGAG--------AGTAGAAAATGAAA---AGAGAATAA-GCAAAACAAAGAGAGTTTTTGTTGAAGGAGGAGCCAAAA--------------------AAGAAAGAATA-CCTCCAT-----ATCTAATGTGCAT---TATCATAAACACAGTGTACAGTTTT---TGCTGACCCTCCCATGACCTGGCTCCACCCATGAGGACCACGGGTCAGGC--TGACCAATAGCTT---C----------------AAAGAATAAT--------GCAGAACAAAGGGTCAGAACATTGTCTGTGAAGCATAAAAGGCCACCACTTCTAGCAGCAGTACATACTTGCTTCTGACACTCCTGT----GATCACCAGCA---------ACCTCCCAGACTTGCCATC-- Pero_maniculatus_HBE --------------------------------------------------------------------------------------------------------------------------------------ATTAAACACATCCAACATATAACAGCTAACAAGCAATCCCAAGACATGAATAGAAATCAAGGGCACTAACGATCAGAACCTTTGGCTATAACAAAGAATGAATATTCCCAAATGTTTCTCAAGGCCAAT-GATGTGTCAATTAACTCATTC-CTCAGTTGGGTCACAAGGCCTACTTTAAAGTAATTTTAGTTCC-------------ATCTTACAGATGAGAAATGTCTATATGAAA-ATAAGCAAGAAAAGAGC--CCAGAGCAGAATTCCCAAAGGAGCCAAGGTC---------CACAGAGTGTTGGTCAGAG---GAC--TCTAGAAGCACAGAAGGTGAATTTG---CATCCCTCTTCTCTGTGGTGTTACTCCCTAGTGTA---TTTTGGAATTGAGTCTTTGTTCCCATTGTCAGTCCTTTGCT----ACTGTATTCATCTGATAGATGCAACCAT-----ATAGGATTCTTATCCACTTGGGACA-ACACGTATCTAGAA--GATGTAATTTTAATCCACATCTCC-CAAG---AGAAGAACTAGATGTAAA------------------TCTGTGTTCACA-GCA-CAAACTCCTTTTTTCTTGAGTT-TGTTC-TTATCATTGTAACCATTCTTTGTCTAAG-GTT----AAAGTTA---CTTTAGACTTAA-AG--TTTTTCCTATAGTGGGTTAAGCT--CCTCTCTCTGTGCATTTGTTGGAAAATGTG-ATGAGA---GAGATGAGT-------ATTATCTTAG-AAGTTTACATGTGAAG--------GGAGGAGAATGAAA---AGACAATAA-AGTTAA--AAAAAAGTTTTTGTTGAAGGAGGAGCCAAAA---------------------AGAAAGAATG-CC-CCAT-----ATCTAAAATGTAT---TATCATAAACTCAGTGTACAGTTAT---TGCTGACCCTCCCATGACCTGGCTCCACCCATGAGGACCACAGGTCAGGC--TGACCAATAGCTT---C----------------AAAGAATCGT--------GCAGAACAAAGGGCTAGAACATAGTCCGTGAAGAATAAAAGGCCATCACTTTTAGCAGCAGCATGTATCTGCTTCTGGCACTCCTGT----GATCAGCAGCA---------AGCTCCTAGACCTGACATC-- Rattus_HBE ---------------------------------------------------------------------------------------------------------GCAGTTAAACACATACACGTTTAGGCTTCTAATTTCAGGTCTAATATTTAAGAGATAGCTAGTAATCCCAAGAAGAGAGTAGAAACTAAGTACACTAGCCAT-----ACTTCACCTATAACAAACACTGACTATTTACAAATGTTTCTCAAGGTTATT-GATGCATCAACTCCCTCATTC-CTCAGTTGGATCACAAGGGCTAGTTTAAAGTTGTTACCGTTTC----------------------ATGTGAAATATGTATATGACA-ATAAGCAAGGAAAGAGC--TCAGAGCAATGTAACCAACGGAGCCAAAATC---------CATAGAGGATTGGTCAGAG---GACTCTCTAGAAGCATAGAACGTGAACTTGTTATATCCATCTTCTCTACAATGTCATTCCCTGTTGTAG--TTTTGA---TGAGTCTTCAGACCCATTGTCAATCCTTTGCT----CCTGTATTCATCTGCTAGATGCAACTAT-----GTATGATTCGCGTCTGCTTGGAGTA-ACATATATCTAGGA--GATATAGTTATAAACCACATATCC-CAAGAAAAGGAGAAGTAGATGTAAT--GTGG-------ACATTTCTGTGTTCACA-GCA-CAAATTCCTTT---------------------------------TTCTTGACCTGAATGGT----AAAGTTA---TTTTAGATTGGAAAG--TTTTTCCTATAGTGGGCTAAGCT--CTTCTCTCTATGC--TTGTTGGAAAATGTG-ACGAGA---GAGCTGAGT-------GTTATACTGG-AAGTTTACAAG-GAAG--------AGTAGAAAATGAAA---AGAGAATAA-GCGAAACAGAGACAGTTTTCGCTG-AGGAGGAGCCAAGA---------------------AGAAAGAAGG-CCTCCAT-----ATCTAATATGTAT---TATCATAAACACAGTGTACAGTTAT---CACTGACCCTCCCATGACCTGGCTCCGCCCATGAGGGCCATGGGTCAGGC--TGGCCAATGACTT---C----------------AAAGAATTGT--------GCAGAACAAAGGGTCAGAGCATTGTCTGTGAAACATAAAAGGCCACCATTTCTAGCAGCAGCATGCACTTGCTTCTGACACTTCTGT----GGTCACCAGCA---------ACCTCCCAGACTTGACATC-- Spermophilus_HBE --------------------------------------------------------------------------------------------------------------------------------------------------------AACCAAAGCAACAAAT-TTCTCCTGAGGTCATAGAGATGGAAAGACTGAGG--------------ATTCTCTAAAAGCACAGAGTATGATCTTGTTCTGTCCATCCTCTCC-GGGAAGCCACCCAATGTACTT-TGGAACTGGGGCAGTGGCCCCACTGTGGGTTCTTTGATACTGTGT------TCAGCATCCAGAAGTAACCTGGTATGTTTCTTCTC-TCTGGTGAAAACTAAGA-TCCAGA--AATATCAGT------------------------TGCAAT----------------AACTTCTCAACAGAGTAAGAGTTACATGTGTTTTAACTTTCTTCCCCCTTGACT---TCATTGTTGATCACTGTTAACATTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTA--GAGAGAGAGAGAGAGAGAGAGAGAGAGAG-----AGAGAGAGAGAGAGAAATTTTTTTA-GTATTTATTTTTCA--GTTTTTGGTGAACACAACATCTTTATTTTTTTTTTATGTGGTATTGAGGATCTAAA-------TCAGCGCTCCACGCATGTCAGGCAAGCACATTACCACTTGAGCCACATCC-CCAGCCCTGTCAACATTCTTAAACTAAATATT----AAACTTTTTTCTTTTAACTGAAACTTATTTTTTCCATCTTGGGCTTAGTT--CCTCTCAGTGGGTCTTTCTTGGAAAAAGCAGATAAGAGATGAAAAAGAT---GGGTATTATCCTGG-AAGATTACATGTGGAG--------AAAAGAATCCAAGG-ATAAGAAATAAGTTAAAAACCATGCTGTGGTTGGATGAGAAGAAAAAAAAA---------------AAAACCAGTAAAGATA-TCTGAGG-----ATCCAGCATGCAT---GGTCACAAACTCACAGTGGATTCTTCAGGGCTGTCCCTCTCCTGTTCTGGCTCCGCCCATGAGGGCCACAGCTCAACC-TTGACCAATGACTT---C----------------AAGGAACTGC--------AGAGAACAAGGGGCCCGTGTTTCAGCAGTGAAGAATAAAAGAC-GTGACTCCTAGCCGCAGAACATACTTGCTTCTGACACTTCGGT----AATCACCAGCA---------AACTCCCAGACCTGACATC-- Rabbit_HBE ------------------------------------------------------------------------------------------------------------------------TAAATGTGGATTTACAGTTTTGTCTCCAACATGCAAAGAATTA--GCCAGT--CATCACATCAGGGGGCTTCAAAAACAAGGGC-------------ACTTAGAAGAATTTGAACCTCTACCCTGGTGACTACAGCACACACTAGACAAATCAATTAACTTATTC-CTCAGTTTGATTATAAATCCTGGGTTTAAATAATTTTAGTGTC---------ATCTGCCTCATGGATTA-AAGTATAAGTAGAGCAGACAAGCCAAAAAAGAGA-GTCAGGGAAATATC---------------------------CCTGGAG---------------TGCTCTCTGTAAGCACAGGAGATAACCTTGC--TGTCTGTCCTGTCTAGGAAATCACTCCTAG--ACTGTACTTTGGAATTGAGTCTT-AGTCCTACTGCAGATCCCTTGTC----ACTCTCTTCAGCTTCCAGGAGTAACCAT-----GCATGGCCCCTGTCTCATGGAAAAA-CTAAGATCTCAAAAGTGTTTGCAGTTCACTCAGGGAAGCT-CAAGTGGATGATGTTCTGCCTCAACCACTTT-------CATTTTTTGTGTGTGTGTGTGCTGTGTTGCTTTGTTTTC---CT-TGACC-TTCTTTTTGTCACCAACCTTGACCCAAATA-T----GAAACTA---CTTTAGCCCTAA--C--ACTTTCCAGTCTTATGCTTAGCT--GCTCTCTATGAATCTTTCTTGGAAAAGGGGAATGGGA---ATGATGGAT-------GCCATCTTGGAAAGATTACATGGAAAA--------AGAAGAGAGTGAAA--ACATCGATAATGTATGACAAATTGTGTTCTGCTTGGAGGAGGAACCAACA--------------------GAGTAGGGATG-TCTCACG-----ATCCGAAAGCCAT---TATCACAAACTCAGTGAACCAC------CACTGACCATCTGGTGGCCTGGCTCCACCCATGAAGGACACATTCCAGTC-TTGACCAATGACTT---C----------------AAAGTATGAA--------AGAGAACAAGGGGCCAGACCATCAGCAGTGGGGAATAAAAGGCCAAGCCTTGAAGCAGCAGCACAAAGCTGCTTCTGACACATTTGTGATCGATCACCAGCA---------AGCTCCCAGACGTGACACC-- Pero_leucopus_HBE --------------------------------------------------------------------------------------------------------------------------------------ATTAAACACATCCAACATATAACAGCTAACAAGCAATCCCAAGACATGAGTAGAAATCAAGGGCACTAACGATCAGAACCTTTGGCTATAACAAAGACTGAATATTCCCAAATGTTTCTCAAGGCCAAT-GATGTGTCAATTAACTCATTC-CTCAGTTGGGTCACAAGGCCTACTTTAAAGTAATTTTAGTTCC-------------ATCTTACAGATGAGAAATGTCTATATGAAA-ATAAGCAAGAAAAGAGC--CCAGAGCAGAATTCCCAAAGGAGCCAAGGTC---------CACAGAGTGTTGGTCAGAG---GAC--TCTTGAAGCACAGAAGGTGAATTTG---CATCCCTCTTCTCTATGGTGTTACTCCCTGGTGTA---TTTTGGAATTGAGTCTTTGTTCCCATTGTCAGTCCTTTGCT----ACTGTATTCATCTGATAGATGCAACCAT-----ATAGGATTCTTATCCACTTGGGACA-ACACGTATCTAGAA--GATGTAATTTTAATCCACATCTCC-CAAG---AGAAGAACTAGATGTAAA------------------TCTGTGTCCACA-GCA-CAAACTCCTTTTTTCTTGAGTT-TGTTC-TTATCATTGTAACCATTCTTTTCCTAAG-GTT----AAAGTTA---CTTTAGACTTAA-AG--TTTTTCCTATAGTGGGTTAAGCT--CCTCTCTCTGTGCATTTGTTGGAAAATGTG-ATGAGA---GAGATGAGT-------GTTATCTTAG-AAGTTTACATGTGAAG--------GGAGGAGAATGAAA---AGACAATAA--GTTAA--AAAAAAGTTTTTGTTGAAGGAGGAGCCAAAA---------------------AGAAAGAATGGCC-CCAT-----ATCTAAAATGTAT---TATCATAAACTCAGTGTACAGTTAC---TGCTGACCCTCCCATGACCTGGCTCCACCCATGAGGACCACAGGTCAGGC--TGACCAATAGCTT---C----------------AAAGAATCGT--------GCAGAACGAAGGGCTAGAACATAGTCCGTGAAGAATAAAAGGCCATCACTTTTAGCAGCAGCATGTATCTGCTTCTGGCACTCCTGT----GATCAGCAGCA---------AGCTCCTAGACCTGACATC-- ; end; [HBE 1kb downstream flanking sequence] #NEXUS begin data; dimensions ntax=12 nchar=1569; format missing=? gap=- datatype=dna ; matrix Rabbit_HBE ACTCTCTTCCCAGTTTCTTTAGTG-CCCCTACTCATCCCCAGCGTC--CTCCTTCTGTACCTT-----GGGGACTAGGC---TCAGCCTTGATGGCACAG-TTTCTGTTTAATAAAATACATTCTATTCAGTAATCAAAAAATGAT--GTCTCATCTTCTT--CGTATT-TTACTCATGTGTTTA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAAAAAAAAACCACACATGTTCATGATTGAGACAGAGAGAGACATAGGAA--GAAATAAGAAT--CTTTGAGTAGTATATTAGGATTTATCAAATAAAGGGAGGTGTTATTGGAGGGTACAGGAGAATCCAGAGAGGACACCAAGATGGGGAAGAAGTTCTCTTGGGTGGGGCAAAGGCTTCATTAAGT------GGACTG--------AGTGTGGCAAAAACATACGGCAGAGGG-AAGGGAATGAGGGACCAAAGTGGTATCTGCGAAATCAGATTTATGGTGAATGTTG--TTTCACT-----------CAAAAGAAAGATTTGTAGTGAT-CAAAACTCTAGACATGGTAATACTAT----TTTAATG---------TACTTGAACAT-ACACATTGAAGAAATTAGCTTGATTT--ATATCTTGAGAAATTGGTTTGAATATAAAGAAATGAGTTAAAGTA-TGAGTTGGAAATTTCCAGAAAAAAATGTTTTCATGAACAA--ACTGCAGTT-----TGTTCTTTCCTGAAGGGTTCTGTTGTCTCAATGGGATGCCAAGACTGAGACATATTACATCATTGTGCATTATCTTCTGATTGAATGCTG---------------------TAAAATAAAGCTAG--TTTCAACACAAATGAAAACTT-TCATGGG---AAAGATAAAGATTTCATGTAGAAAATAAA-ATACTAGCA----AATGTGCCTGGTCCTAAATCAGCAAGGTAAAACTTGGTGTCATAGATGGAACTGGAATTCTGGAAGTAGAGGGGAGTATTAGGAAAGATTAGATAGTGCTGAGCTTTGAC-TATAAAAAATAAAATCTACTACTAGGC-TATTAGCGACAATGAGTTATAA-ATATTCTTAGGATGCTAAGTGACT----CCATGGATAAGA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Cavia_HBE GCTCGTTTCTGCAGTCTGCCAGCA-CTCCTGTGTGCCCCCGATACC--CTCCTTCTGCTCAT------GGGGACTGGGA---TGGGCCTTAAAAGTACAA-CTTCTTTTCAATAAAAATTATTCTCTTCAGTTATCAAACATTGAT--GTTTTGTTTTCTC--CATCTT-TTACCCTTGTATTAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGGGAAAGCATTCATG---------GGCTGAAGGGTGTTGCAGTGTAGGAA--GAAATGAAAGAACCTTTCAGAAGCATGCAGGAACTCATCAACATA-----CTTGTCAGTGGAAGATC-----------------------AAAATGGGGAGGATGCTCTATC----CAGAGCAAGGGTTAGTTAAGCAGGCAGAGATGTGTG-GGGCAATGCGGCAAAAAC-TGCTGCAGAGAG-GAAAAAGGATGAGCC--TGGTGGAAACTGAGAAAGCAAAGATGTGATCAATGCCAAGTTTCATTAA----AAATAAAATGCAAAATCTTTGCAGGAT-TTGAGGTCTAAACG-AAGATTACTAA----TATAAAT---------CATTCTAATAT-ACGTTTTGAAGCAGCTACCTTGCC----ATGGCTTTTGAGATTGACTTGGAGATAAGGAGATAAGTTAAGGGAGTTTTTCTGAGTTTTGCAGAAAAA---GTCCACATGACTTA--ACAATAGCT-----TGCTCTTTTCCAAAGGGTCCTTTTGTCTTTTTTTTTCTTTGACACGAAGTCTCACTTTGCAGTTCAGGATGGCCTT--GAACTCACTTTGTAGTC----------------TAGGCTGACCTTGTGCTCACAGTG-ATCCGCGTGCCG-CAGCCTCCT-GAGGGCTGGGATTGCAGGTGTGTGTCACCATGCCCAGCT----GGGGAGCCAAGAATAAAACACATGGAATCGCTGTGCATCATCTGGAAGAATGTAGCACGCACTAAAATAAAATTAGAGTTAATATACAAGGAATAACCTT----TTTGGA-GGCAGTGA-TAAAAACGA-TGTAGGAGATAAAAGTCTATATGAATAGTAACAAGGCTTGTAGTTTAAGACCAATGA-GATTGGGCATGATGACCTGCATGAAATTTCCTCC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Spermophilus_HBE ACCCGCCTCCCTATT-CACCAGTG-CTCCCGTGTGTCCCCAGTACC--CTCCTTCTGTACAT------GGGGACTGAGC---TCAGCCTTGAAAGCATAG-CTTCTGCTTAATAAAACA---TTTCTTCAGTAATTCAAAATTGAAAAGTTTTGTCTTCTC--CATTTT-TTACTCTTTTGTACT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAGAAG---------------------------TAGGAAGAGACATAGGAA--GAAACGAGAGTTTCTTTGAGAAGTGTATAGAGACACATAAAGTCAAGC-ATATATTATTAAAAGATC--------------AAGGACACTAAGATGGGGAAGAATTTCTATGGGTATGGGGAAATGGTGAGTTAAGTCAGCAGGGACTTGTG-GGATAGGGTGGCAAAAACTTGCTATAGAGGG-GAAAAAGGAAGTGGT--AAATGATACCCAAGAAAGCAGATTTGTAGTACAAGCCAAATTTCATTAACATCAACAATAATAATAAAGTCTTCTGGGAT-CTGAGGTCTAGG-ATAGGATAACTAT----TTTAATT---------TATTCTAATAT-CCACCTTGA-GCAGCTAAATTGTCAA--ATGTGATATGAAACTGTTTTAGAGGTATGGGGTTGAATTGAGTGA-TGACTGAGCACTTTCTAGAATAA---GTTCCCATGATTCA--ACAATAGCT-----TGCTCTTTT-------------TTATCCTAATGGAGCACCGTGGCTAAGACACATGAAATAATTGTACATTATATTCTGATAGAATATAGCACAC----------------TAAAATGAAGTTAAAATTACTATATATGTGGGGACAT-TGGGGGATGAGGAGATGAAAACTTTATGTAGGAGAAATCTACATGAATACTTCAAGGCTCATGGTCTAAAACCAACAAGTCAGGGATTGGTGACTTGCATGAAACTGCCTCTTTGAAA-----GGAGAGTATCAGCAAAGACCCAATAGTGCAAGAACTTGAC-TATAAAAA-TACAAGCTATTGCTGCACCTGGTGGTGCACACCTGTAATCCCAGGAACTCTGGAAGCTGAGAGAGGAAGATCACAAGTTAAAGGCAGACCTCAGCAACTTATTG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Mus_Balbc_HBE -GCCCTCTCTCTAGCTGTCCAGCA-ATCCTGTGTGTCCGCTATGCC--TCCTCTCTGCACAT------GAATACTG--C---TGTTCCT--GAAGCACAT-CAT--GTT-AATAAAGCACCTCCG-------AATCAAAA--TCG-----TTTG-CTTGTC--TGCTTT-CTACTTT-ATGCT-A--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGACACATATTTG----TGTATTTGTGGAAAAAGGGGGAATGCACAGGAAATGACTCAGGCATTTATCTGAAACCTGCA--GGGACTCAAGAGAGAAACGTAGACGCCATGGAAGGCTTCTACA---CCCAGAGAGAGTCTAAAGCTGA-AAAGAATTCTCAGAGAGAAGAAAGAA------ATTTAGTGGAGAAGGCATTGTG-TATGGAACATATGAACATTTACTGTAGAGGGTGAAGAAAAGGGTGAC--AAGTGATACCTTGCA--GCAG-GTTGTGACAT--CCCAT-TACCATT------------AAGAAAAAGCTCTTACGAGAT-CCAAGAGCTAAG-ATAGAATTA-------------------------ACTTTCTTTT---AAAAAGCATTTATTGGGTAACCAA--TTGGTGTGATCTGCCCCGGGGAAGACTCTTGATCCAGCTCTCAGCAACCCTTAGTTGACTATAATTCTTTGTGTATGGTTGAGGTC--TCATCGGCTTTATTTACCCCACCCATATTAGCAAATGTGTATCACAGCAAGCTTCATGGTCTTTTGGCTCTTACAATCCTTTTCCCTTCTTCTGAAGTGTTCCCTGATCCTTAGGTG-----------TGTAGATGTATCCACTGAGGTTAGGCTCCACAACTCTGAAGTTTGAATGGTTGTGGATTTCTGTACTGGTCTTTGTCTATTACAA---AGAGTGTTCTACATGAGAGGAGAAGACTACAACTTATACATACACACACACACACACACACACAC--ACATACATACAATTACAATGGCAAAATGACACGATTT--TGAAAGGGAGCAAGGAGGGTATACAGAGG-GTTTGGAGGGAGAAAAGAAAAGGGTGATGTGTTTTAAC---CATATTATAA-TTTCAAAAACAGTTTT---AAAAATTTATTGTTTTAAGT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Mus_C57_HBE -GCCCTCTCTCTAGCTGTCCAGCA-ATCCTGTGTGTCCGCTATGCC--TCCTTTCTGCACAT------GAATACTGGAC---TGTTCCTTGAAAGCACAT-CAT--GTTTAATAAAGATCATCCTTCCTGGTAATCAAAAATTCAG---TTTTGTCTTGTC--TGCTTT-CTACTTTTATGCT-A--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGACACATATTTG---ATGTGTTTTTGGAAA---GGGGGAAGCACAGGAA--GACTCAGGCATTTATCTGAAACCTGCA--GGGACTCAAGAGAGAAACGTAGAAGCCATGGAAGGCTTCTACAGG-CCCAGTGAGAGTCTAAAGCTGAGAAAGAATTCTCAGAGAGAAGAAAGAA------ATTTAGTGGAGAAGGCATTGTG-TATGGAACATATGAACATTTACTGTAGAGGGTGAAGAAAAGGGTGAC--AAGTGATACCTTGCA--GCAG-GTTGTGACAT--CCCAT-TACCATT------------AGGAAAAAGCTTTTACAAGAT-CCAAGAGCTAAT-TTAGAATTA-------------------------ACTTTCTTTA---AAAAAGCATTTGTTGGGTAACCAA--TTGGTGTGCTCTGCCCCGGGGAAGACTCTTGATCCAGCTCTCAGCAACCCTTAGTTGACTGTAATTCTTTGTGTATGGTTGAGGTC--TCATGGGCTTTATTTACCCCACCCATATTAGCAAATGTGTATCACAGCAAGCTTCATGGTCTTTTGGCTCTTACAATCTTTTGCCCTTCTTCTGAAGTGTTCCCTGATCCTTAGGTG-----------TGTAGATGTATCCACTGAGGTTAGGCTCCACAACTCTGAAGTTTGAATGGTTGTGGATTTCTGTACTGGTCTTTGTCTATTGCAA---AGAGTGTTCTACATGAGAGGAGAAGACTACAACTTATACATATACACACACACACACACA--------CATACATACAATTACAATGGCAAAATGACACGATTT--TGAAACATGGGGAGGGGGCAACATTGGAG-ATGTAAAGTGAATTAATTAGTGGG-GAAAAAAGAAAAT---AAAAAAGTAA-AAA-AAAAATCATAAT---AAAAGTAAATT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Mus_Balbc_HBGE --GCCCTTTCCCTGATGTCCAGCA-TT-CTGTACACCCCTCA--GC--TCTGCCCTACCCAT------GGCCACTGTGC---TGGTCTCTGAAAGCAGGG-CTTCTGCTTAATAAAGTCCATTCTTTTCAGTAAACCATGAGTCAT--ATTTTGTTGTGTC--TGTTTC-TTACTTTTGTGTTTA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGAAAGAAGGCCG---ATGGGCAGATGGTAA---GGGAGCGAGACAGAAG--GACACTTGAGTTTCTTTTAGAACTTTGCTGGAATTCAGGAGAGGAA-GTAGATGTTACAGAATTTTTCTAGAGC-CCCAGGAAAGATGAAAAGTTGG-GGATAATTCTCATGTAGGAAAGCAAAGGGTTAATGCCGTGGAGAAAAAAGTTC--TGTGGTAGTCACTAAAACTTAGTGTAGAGGGTGAAGAAATGCACGAC--AAATGATCACCTA-----CAG-TCTGTGTTATGTGCCAT-T-TAATT------------AAGTTAAA-CTGTAGACAGAT-CTAATGCTCAAC-CTGAGATAAT-----------------------CAGTTAAAT------------------TCTTTTAAAAA--ATAATTTGCTTTTATTAT----GATTTTTTTTTTTTACTTTTTTGTTTTCTTTTTTCCCCACTAATTAAT----TCACTTTACATC--TCCAATGTT----GCCCCCTCCCCATCCCCCCTCACACAATTTCTTCTCACATCCTGCCTC---TTCTCCTCTGAAAGGGTTGATCCCCTCCTAGGGTACCCCCCCCCCC---------CAACCCTGGCATATCAACTCTCTTCCTGACTAGGCACATCTTTTCCCACTGATGTCAGACAAGGCCATCCACTTAGGGGAATTGATTCTGACAG---ACAGTGAACAGCTTTAGAG----ACAGACAGGCTTATATTCTCCAGTTGTTGGGGGAACC--------ACGAGAAGATTGAGCTACATATCTACTCCATAT-GTGCTGGGACCT-AGGTTCAGCGTGCATAAGCT--CTTTGATTGGTGGTACAGTCTCTGAGAACCCCCAACA--GTCCAGGTTAG-TTACTCT-GTTGGTCTATCTGTG---GAGTTCCTATCCCC-TTAGGGTCCCTCTATCC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Mus_C57_HBGE --GCCCTTTCCCTGATGTCCAGCA-TT-CTGTACACCCCTCA--GC--TCTGCCATACCCAT------GGCCACTGTGC---TGGTCTCTGAAAGCAGGG-CTTCTGCTTAATAAAGTCCATTCTTTTCAGTAACCCATGAGTCAT--ATTTTGTTGTGTC--TGTTTC-TTACTTTTGTGTTTA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGAAAGAAGGCTG---ATGGGCAGATGGTAA---GGGAGCGAGACAGAAG--GACGCTTGAGTTTCTTTTAGAACTTTGCTGGAATTCAGGAGAGGAAAGTAGATGTTACAGAATTTTTCTAGAGC-CCCAGGAAAGATGAGAAGTTGG-GGATAATTCTCATGTAGGAAAGCAAAGGGTTAATGCCGTGGAGAAAAAAGTTC--TGTGGTAGTCACTAAAACTTAGTGTAGAGGGTGAAGAAATGCATGAC--AAATGATCACCTA-----CAG-TCTGTGTTATGTGCCAT-T-TAATT------------AAGTTAAA-CTTTAGACAGAT-CTAATGCTCAAC-CTGAGATAAT-----------------------CAGTTTAAT------------------TATTTTAAAAA--ATAATTTACTTTTATTAT----GATTTTTTTT----ACTTTTTTATTTTCTTTTTTCCCCACTAATTAAT----TCACTTTACATC--TCCAATGTT----GCCCCCTCCCCATCCCCCCTCACACAATTTCTTCTCACATCCTGCCTC---TTCTCCTCTGAAAGGGTTGATCCCCTCCTAGGGTATCCCCGCCCACACACACA--CAACCCTGGCATATCAACTCTCTTCCTGACTAGGCACATCTTTTCCCACTGAGGTCAGACAAGGCCATCCACTTAGGGGAATTGATTCT-ACAG---ACAGTGAACAGCTTTAGAG----ACAGACAGGCTTATATTTTCCAGTTGTTGGGGGAACC--------ACAAGAAGATTGAGCTACACATCTGCTACATAT-GTGCTGGGACCT-AGGTTCAGCGTGTATAAGCT--CTTTGATTGGTGGTACAGTCTCTGAGACCCCCTAACA--GTCCAGGTTAG-TTACTCT-GTTGGTCTTTCTGTG---GAGTTCCTATTCCC-TTAGAGTCCCTCTA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pero_maniculatus_HBE -----GCCCTCTACCTGTCCAGCA-ATCCTGTGTGTCCCCTACTAC--ATCTTTCTGCACAT------GAGAAATGGAC---TGATCCTTGAGAACACAG-ATT--GTTTAATAAAGATCATTCATCCCAGTAATCAAAAAGTCAT---TTTTGTTTTGTC--TGTTTT-TTACTTCAGTGCT-A--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGAAAAATGTTTG---ATGGGTTTGTGGTAG----AGGGGAATACAGGAA--GACACGCGAGTTTCTCTGAAAACTGGA--AGGACTCAAGAGAGGAGAGTAGATGCCATTGAAGGCTTCTACTGG-CCCAGGGAGAGCCTATAGCTGGGAAAGAATTCTCAAAGAG-----------------------GAGAAGGAATTGTG-TGTGGAACATATAGAAACTTACTGTAGAGGGTGAAGAAAAGGATAA--------GTATCTAATG--GCAG-GTTGTGACATATCCCAT-TTCAATT------------AAGAAAAAGCTTT--AGAGAT-CCAAGATCTAAG-ATAGGATTATTAT----TTTAAATTACTTAATGTACTTTTTTTTTCCTAAAAGGATTTATTGGATAACCAA--TTAGTATGCTCTTCCCTGAGGAAGACTATTTCCCCAGCTCTCAGCATTCTTTAGTTGCCTGTAATTCTTTGTGTGTGGTTGAAATC--TCATTGACT----TTCTCCTATCGATGTTAG----TGTGTCCCACAAGAAACTCCTTGATCCTCTGGCTCTTACAATCTTTTGTTCCTCTTCTGCAGTGTTCCCTGAGCCTTAGGTGTGGGAGTGTTTTGTAAATGTATTCACTGGAACTGGGTTCCACAACTCTGCATTTTGATTGGTGGTGGATTTCTGTAGTGCTCTCCATCTATTGCAA---AGAGAGG-CTCCCTGAATG---AGGGGTGAAGATTACACTTACATATACATGTATGCA-----------ATA---ACAATTAAAGACAAAAGAAGACATAAATT--TGAA-GAGAGAAAGGAAAGTATATAGAAGAGTTTGGATAGAGGAAAGAAAAGTGAGATATGTTGTAAC---TATATCACAA-TTTCCAAAATGTTTTTTAAAAAGATTTATTATTTTA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pero_maniculatus_HBGE -GCCCCCTTTCTTGATGAGCGGCA-CTGCTGTGCACCTCTCA--GG--CTCATCTTACACAA------GACCACCTTGT---TGGGATTTGAAACTTGAG-CTTCTGCTTAATAAAGTCCGTTCTCTTCAGTAACCC--GAGTCAT--GCTTTGTTGTGTG--TGTTTC-TTACTATTGTGTT-A--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGAAAGAAGGTTG---ATGGGTGCATGGTAG---TCAAGAGGTGCCACAG--GACACCAGAGTTTCTTTGAAAACTGTATCGGGACTCAGAAGAGGAAGGTAGATGTTATGGGACTTTTCTAGGGT-GTCAAGGAGGATGAAGAGTTGA-GAAGAATTCTCATGTAGGAAAGCAAAGGGTTAATTAACTGGAGAATGAATTGT--GCTGACAGTTGCTAAAACTTAGTGCAGAGGGTGAAGAAAAGCATGGC--AAGTGATGACCTG-----CAG-GTTGTGATATGTGTCTT-T-TCATT------------AAGATAAAGCTTTAGATAGAT-CTAATGTCTAAG-CTGAGATAATG----------------------CACTCAGAT-------------TTTTTATTTTTAAGAA--ATGATTTACTTTATTTTT----AATCATGTGTCTCTGTGTCTGTCACTGTTTGGTTTTGTGCATGTGAGTGCA-AGAGTCTATGGCAGCTAGAAGCT----CAGGTCCCACTGGAACTGGAGTTACAGGTGGTTGTGACTGCCTGCCATGAGTGCTGGGAACTGAACTCAGTTCCTCTGAGAGTGTATGTACTCTTA-----------AACACTGAGCCATC--ATCTCTCCAGGTTCAAGTGTACATTTTCCAGCAGATACTTTATCAGG-TGTCCTCT----GAAGCTGATTGC--AAG---AAAACGGACAAATTGATAG----AGAGCAGTGACCATTTAAGACAATGTTTCAATAAAACCAC----CATAGCAGGCTTGCGTTTTGAAGGAATTCCTTGTCTCAATGGTGAATCAAAGCTAGGAGACAC-AGTTCACTGTAATTTTCTGTAGGGCTGTAATGAGCAATGAGATGGTGATAGAGAAA-GGACAGAAGTAGAACCTTGTCAGGTCAAGTGGGGACGATG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pero_leucopus_HBE -----GCCCTCTACCTGTCCAGCA-ATCCTGTGTGTCCCCTACTAC--ATCTTTCTGCACAT------GAGAAATGGAC---TGATCCTTGAGAACACAG-ATT--GTTTAATAAAGATCATTCATCCCAGTAATCAAAAATTCAT---TTTTGTCTTGTC--CATTTT-TTACTTCAGTGCT-A--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGAAAAATGTTTG---ATGGGTTTGTGGGAG----AGGGGAATACAGGAA--GACACCTGAGTTTCTCTGAAAACTGGA--AGGACTCAAGAGAGGAGAGTAGATGCCATTGAAGGCTTCTACTGG-CCCAGGGAGAGCCTATAGCTGGGAAAGAATTCTCAAAGAG-----------------------GAGAAGGAATGGTG-TGTGGAACATATAGAATCTTACTGTAGAGGGTGAAGAAAAGGATAA--------GTATCTAATG--GCAG-GTTGTGACATATCCCAT-TTCGATT------------AAGAAAAAGCTTT--AGAGAT-CCAAGATCTAAG-ATAGGATTATTAT----TTTAAATTATTTAATGTACTTTTTTTT-CCTAAAAGGATTTATTGGATAATCAA--TTAGTATGCTCTTCCCTGAGGAAGACTATTTCCCCAGCTCTCAGCATTCTTTAGTTGCCTGTAATTCTTTGTGTGTGGTTGAAATC--TCATTGACT----TTCTCCTATCGATGTTAG----TGTGTCCCACAAGAAACTCCTTGATCCTCTGGCTCTTACAATCTTTTGTTCCTCTTTTGCAGTGTTCCATGAGCCTTAGGTGTGGGAGTGTTTTGTAAATGTATTCACTGGAACTGGGTTCCACAACTCTGCATTTTGATTGGTGGTGGATTTCTGTAGTGCTCTCCATCTATTGTAA---AGAGAAG-CTCCCTGAATG---AGGGGTGAAGATTACACTTACATATACATGTATGCA-----------ATA---ACAATTAAAGACAAAAGAAGACATAAATT--TGAAAGAGAGAAAGGAAGGTATATAGAAGAGTTTGGATAGAGGAAAGAGAAGTGAGATATGTTGTAAC---CATATCACAA-TTTCCAAAATGGTTTTTAAAAAGATTTATTATTTTA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Rattus_HBGE --GCCCCTTCCCTGACTTCCAGCA-TT-CTGCATATCCC-CA--GC--TCTGTCCTACACAT------GACCACTCTGC---TGGTCTCTGCAAGCAAGA-CTTCTACTTAATAAAGTCCATTCTCCTCAGTAATCCATGAGTCAT--ATTTTGTCCTATC--TGTTCC-TT----TTGTGTTTA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGAAAAAAGACTG---ATGGACAGAAAGGAA---GGGAGAGACACAGAAG------------TTTCTTTGAAAACTGTGTTGGCAGTTAGGAAAGGAGAGTAGATGTTATAGAATTTTTCTGGGGC-CCCAGAAAAGATGAAAAGTTGG-GGA-AATTCTCATGTACAAATGCAAAGTGTTAATTCCCTGAAGAATAAA-TTG--TGTGGCAGCCACGAAAAGCTAGTATATCGGGTGAAGAAAAGCATGGC--AACTGATTGCCTG-----CTC-TCTGTGATATGTGTCAT-T-TAATT------------AAGACAAAGCTTTAGAGAGAT-CTGATGCCCAGC-CTGAGATGAT-----------------------CACATTAATGT----ATTGGGGTTTTTTATTTTTAAAA--GTAATTTACTTTTATTAT----AATTTTTTT-----ACTTTTTTCTTTTCTTTTTTCCCCACTAATTAATCTATTTACTTTACATC--TTTACTGCT----GCCTCCTCCATA-CCTCCCTCACACAGTCCCTTCTGATATCCCCCCTCCTGTTCTCCTCTGGAAGGATTGGTCCTCTC-TAGGGTATCCCCGC-----------------------------AATCTCTGCCTGGCTAGGCACATCTTT-CCCACTGAGGCCAGACAAGGCTGCCCATTATGGAGAATGGATTCG-ACAT---ACAGTCAACAGCTCTAGAG----ACAGACAGACCTATCCCCTCTGGTTGACCCTATACTCCATTA--TGCTTGCAGACCTAGCATCACTTGGAACCTAGCA-TCACTGTCCTCTTAGAGGCTCCACCCAGTAGCTGACTAGAAAACATGATTTATTTCTTTTAATCAAGTGTCTCTGTGTCTATCTG-TGTTTGG-GTTTGTGCATATGAGTACAAGAGTCTATGAGCGTCAGGATCCATTTGAACTGGAGTTA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Rattus_HBE -GCCCTTTCTCTAGCTGTCCAGCA-ATCCTGTGTGTCCCCTCTGCC--CTCTTTCTTCACAT------GAGTACTGGAC---TGGTCCTTGAAAGGACAG-CAT--GTTTAATAAAGATCATTCTTCCTGGTAATCAAAAATTCA----TTTTGTCTTGTC--TTTTTTTCTACTTTTATGCT-A--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACGATACCTATTTG---ATGTGTTTGTGGAAG------------AGAGGAA--GACACAGGCATTTCTTCGAAAACTGTA--GGAACTCAATCGAGAAACATAGATGCCATAGAAGGCTTCTATAGG-GCCAAGGAAAGTCTAAAGCTGGGAAAGAGTTCTCAAAGAGAAGAAAGAA------ATTTAGTGGAGAAGGAATTGTG-TATGGAACATATGAAAATTTATTATAGAGGGTGAAGAAAAGGGTGAC--AGGTAATATCTGGCA--TCAG-GTTGTGATAT--CACAT-TACCATT------------AAGGAAAAGCTTTCATGAGAT-CCAAGATCTAAG-ACAGAATTA-------------------------ACATTCTTCT---AAAAAGCATTTATGGGATAACCAA--TTGGTGTGCTCCACCCTGGTGAAGACACTTGCTCCAGCTCTCAGCATCCTGTAGTTGCCTGTAATTCTGTGTGTATGTTTGATGTC--TCATGGGCT----ATCCCCCACCCATTTTAGCAAATGTGCATCACAGCAAACTTCCTGGTCTTTTGGCTCTTACAATCTTTTGTTTTTCTTCTGAAGTATTCCCTGAACTTTAAGTGGGAGAGTCTTTTGTAGATGTATCCACTGGGGTTAGGCTCCAGAACTCTGAAGTTTGAATGATTGTGGATTTCTGTAATTGTCTTCATCTATTGCAA---AGAGTGTTCTTCATGAAAA---AAGACTATAATTTATACATATACGAATACACATAAACATATAT--GCATATACATACATGCA-TACAACAATGACAAAATGGAATGGCAAAAGAAAAGGGAGATATGCTGTAA-CTATTATAATTTCAAAAAGTTTCACAAATTTATTATTT---TAAGTGATGA-CTCTGCATGTATCTCT---ATACTTA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ; end; [HBG 1kb upstream flanking sequence] #NEXUS begin data; dimensions ntax=11 nchar=1327; format missing=? gap=- datatype=dna ; matrix Mus_Balbc_HBGE ---------------------------------ATTATATAGGAAGATCAAAGAAA----TAGAACTATAATTAGGAAATCAAAACTAGGGATATTTTTCCTAATGTATAATTCTGTCCCAGCTGAGACAGAGTATGTGG------ACTGAATGAAAATATCCCGGCCACTTCTGAGTTATTCTAAAAAACACAAACCATCAAAGACAGATCCTGGTTGAAGCAAACTGAATGATCAGTCATTCAGCATTTTTGGTACATAACTTAATATAGGCACAGAGAAGAC-TAAACCCACACCCTTCTACACTTATCCAGTGGG---TATC-----------ATAGTGCTTAGTGACAG---ACT----ATACATTGCATTCACATGGTGGAAAA-TGCCATGGT-TACATACAGTAGATTCCTCTATATAA---TGTATATTCCAT-----------------AGTGGAG-ACAAACACAGAGACATGTTCTAGTATACCACAGTAA--------------------------------------------------------------------------------------TCTATTCCT-----ACTCAGATACTGCAATGCAATGGGATCTGCTTTCCTGGGACTGTTGGGAACTAGGAAGATCATGGTCTAAACCTACAGAAA------------------------------------------ATGCATGGCTTGTGAGTACAAGGCATATTTCCATAACTTAGGTCCTGAAACCCATAGCTAAAATG----AGCCTCAGGCTCACTGAGGTTTTCCC-C-ATGTTTGCCTGTGCTTCAGCT--TAAATGTA----TTCCTCTATGTCT-TAAATGAAA----AGGAAAAATTGT-GAAAGATACCCTTG-CAAATCTCCTGTTGAG--------GGAAGGGTCTAAACAGAAGGGAGGAAGGAATAA--AAGAGGATGAACACTGGGAAAG--------------------------CTGGAGCAGGAGGC-TCTGCCTCCACGAGGCAGGGGGCCTACTGGACACTATCTTAGT-GCAATGCT---ATCTAGACCTTACCCCAC-TGGACCCCACCCCTGTCTTGCCCAGACTCTC--TTGACCAATAGCCT---C----------------AGAGTCCTGGG-------GAAGGGTAAGGGGAGCAAGGTCCAG-GGTGAAGAATAAAAGAACAGGTCTTCAGCCTCTTGAACATTCTGGCTTCTG-CACACCTGA----GATCATCTCCA---------AGCTTCCAGACCTCACACC-- Mus_Balbc_HBG -----------------------------------------------------------------------------------------------------------------------------------------------------------------------CTCTTCACAGTTAGGTTACAAACACACAAAAAGTGAAAACAGAGCTGAGTTGAAGAAACCTGAAAGCTTGGTCATTCAGTGTTCTCAGTATTTAACCAGTAATGATCATAGAGAAGGC-TAAACTCTCACCCTTT-TCACCAGGCAGCTACACTTATCCTGGG-GGAGGGGGGGGGAATGCCAATTGTATGGTGTCAACACTGTGCATTCAATGGGTGGAAAA-TGTTGTCATGTAAACAG-----ACTTCTCTACTTTA----GTGTAT----------------------GATGG------AATGTGGAGACATGTTGTACTTCTACACAGTAATACATACACACACACACACACACACACACACACACACACATATATATATATGTATATATATACATATACATACATATATATATATATATATTTTTTTTTAACTTAGAAACTGAAATGTATTAGGAATAGCTTTCCTGGGGCTG-TGGGAAATAAGAAGATCATGTCCTAATCCTACTGAAAATGCATTCAATGGTTTT-------GCACACCACGTCTTTGTTATACGTGGCTTGTGAGTAAGATTCATATTTCTGTCACTTAGGTTCATAACCCCATTCCTAAAAAT----AGCCTCTGGCTCACTGAGGCGTTCCC---ATGTTTGCCTATGCTTCAGCT--TAAATGTATTAATCCCTCTAAGTCTGAAGTGAAAA----AGGGAAGAATGT-GAAAGACACCCTTG-CAAATCTCCTGTTGGG--------GGAAGGAGCTAACCAGAAGGAAAGAAGGAAGGA--AAGACGGTGAACTCTGGGAAAG--------------------------CTGCAGTAGACAGC-T---------CGAGGCAGGGGGCCTACTGGACACTATCTTAGT-GCAATGCT---ATCTAGACCTTACCCCAC-TGGACCCCACCCCTGTCTTGCCCAGACTCTC--TTGACCAATAGCCT---C----------------AGAGTCCTGGG-------GAGGGGTAAGGGGAGCAAGGTCCAG-GGTGAAGAATAAAAGGACAGGTCTTCAGCCTCTTGAACATTCTGGCTTTTG-CACACTTGA----GATCATCTCCA---------AGCTTCTAGACCTCACACC-- Mus_C57_HBG ---------------------------------------------------------------------------------------------------------------------------------------------------------------TACCCTGTCTCTTCACAGTTAGGTTACAAACACACAAAAAGTGAAAACAGAGCTGAGTTGAAGAAACCTGAAAGCTTGATCATTTAGTGTTCTCAGTATTTAACCAGTAATGATCATAGAGAAGGC-TAAACCCTCACCCTTT-TCACCAGGCAGCTACACTTATCCTGGGTGGGTGGGTGGGGGCTGCCAATTGTATGGTGTCAACACTGTGCATTCAATGGGTGGAAAA-TGCTGTCATGTACACAG-----ACTTCTCTACTTTA----GTGTAT----------------------GATGG------AATGTGGAGACATGTTGTACTTCTACACAGTAATACAT------------ATATATATATATATGTGTGTGTGTGTGTGTGT-TATAAATATGTGTGTGTGTGTGTGTGTGTATATATATATATTTTT-----ACTTAGAAACTGAAATGTATTAGGAATGGCTTTCCTGGGGCTG-TGGGAAATAAGAAGATCATGTCCTAAGCCTACTGAAAATGCATTCAATGGTTTT-------GCACACCACATCTTTCTTATACGTGGCTTGTGAGTAAGACTCATATTTCTATCACTTAGGTTCGTAACCCCATTCCTAAAAAT----AGCCTCTGGCTCACTGAGGCGTTCCC---ATGTTTGCCTATGCTTCAACT--TAAATGTATTAATCCCTCTAAGTCTGAAGTGAAAA----AGGGAAGAATGT-GAAAGACACCCTTG-CAAATCTCCTGTTGGG--------GGAAGGAGCTAAAGAGAAGGAAAGAAGGAAAGA--AAGACGGTGAACTCTGGGAAAG--------------------------CTGCAGCAGGAGGC-TCTGTCTCTCCGAGGCAGGGGGCCTACTGGACACTATCTTAGT-GCATTGCT---ATCTAGAACTTACCCCAC-TGGACCCCACCCCTGTCTTGCCCAGACTCTC--TTGACCAATAGCCT---C----------------AGAGTCCTGGG-------GAGGGGTAAGGGGAGCAAGGTCCAG-GGTGAAGAATAAAAGGACAGGTCTTCAGCCTCTTGAATACACTTGCTTTTG-CACACTTGA----GATCATCTCCA---------AGCTTCTATACCTCACACC-- Pero_maniculatus_HBGE -----------------------------------------------------------------------------AGGCACTCTTAGGGATGAAGGTCCTAATGTGTGATTCTGTCCTAGCAGAGGCAGTACATGTGGACTGTTACTGGATGGAAATATCCC-GATACGTC--AGTTATTTTGTGAACACACAAAAAGTGAAGACAGAGCCTGGTTGAA-CAACCTGAAAGGTCAATCACTCAGCATTCTCAGTACTCAACCTGCCACGAGCACAGAGAAGGC-TGAACACACAACCTGCATCACCAGGCAGCTACACTCTTCC-----------AATGGGAATGCCAACTGCATGGTGACTACACAGTCCACTCACAGGGTGGAAAA-GGCTGTCATCTACACACAGCAGATTGCTCTACTTCA---AAGTGA-----------------------AATGGAG-GCAAATGTAGAGACATGCTCTACTACACCACAGTAA--------------------------------------------------------------------------------------TCTATTCTT-----ACTCAGAAACAGAA------------CTGCTTTCCCAAGGCTG-TGGGAACTAGGGAGACCATGGGCTAAACCTATAGAAAATTCATCTGATGG-TCG-------GCACAGCACTTCTTTATCATGCATAGCTTCTGAATAAGGGGCATATTTCTGCCACTCAGGTGCTGGTTCCCAGGCCTAAAGAG----ATCCTCTTACTCTCTGAGGCGTTCCC-TACTGTTTGTCCATGCTTCAGCT--TTAATCTACCGGCCCCTGTAAGGCTAGAGACAGAA----AGGACAGAGTGT-GAAAGATACCCTTG-CAAATCTTCTGTTGGGA-----GCAGAAGGGACTGAAGAAAAGGAAAGAAGGAAAGA--AAGAGAGAAAATACTATGAAAA--------------------------CTTCACCAGGAGGG-TCTCCTCCCATGAGGGAAGGGGCCTACTTGACACTATCTTAGTGGGAATGCT---ATCTACACCTTACTCCAC-TGGACCCCACCCCTGTCTTGCCCAGCCTCTC--TTGACCAATAGCCT---C----------------AGAGTCCTGGGG-----AGGGGGGGAAGGGGTGCAAGGTCCAG-GGTGAAGAATAAAAGGACGGGCCTTCAGCCACTTGAACACACTTGCTTCTA-CACACCTGA----GATCATCTCCA---------AGCCTCTAGACCTGACGCCAT Pero_maniculatus_HBG -----------------------------------------------------------------------------AGTCACTCCTAGGGATGAAGGTCCTAATGTGGGATTCTATCCTAGCAGAGGCAGTACATGTGGACTGTTACTGGATGGAAATATCCC-GATACATCAGAGTTATTTTGTGAACACACAAAAAGTGAAGACAGAGCCTGGTTGAA-CAACCTGAAAGGTCAATCACTCAGCATTCTCAGTACTCAACCTGCCACGAGCACAGAGAAGGC-TGAACACACAACCTGCATCACCAGGCAGCTACACTCTTCC-----------AGTGGGAATGCCAACTGCACAGTGACTACACAGTCCACTCACAGGGTGGAACA-GGCTGTCATCTACACACAGCAGATTGCTCTACTTCA---AAGTGA-----------------------AATGGAG-GCAAATGTAGAGACATGCTCTACTACACCACAGTAA--------------------------------------------------------------------------------------TCTATTCTT-----ACTCAGAAACAGAA------------CTGCTTTCCCAAGGCTG-TGGGAACTAGGGAGACCATGGGCTAAACCTATAGAAAATTCATCTGATGG-TCG-------GCACAGCACTTCTTTATCATGCATAGCTTCTGAATAAGGGGCATATTTCTGCCACTCAGGTGCTGGTTCCCAGGCCTAAAGAG----AGCCTCATACTCTCTGAGGCTTTCCC---ATGTTTGTCCATGTTTCAGCT--TTAATCTACCGGCCCCTGTAAGGCTAGAGACAGAA----AGGACAGAGTGT-GAAAGATACCCTTG-CAAATCTTCTGTTGGGA-----GCAGAAGGGACTGAAGAAAAGGAAAGAAGGAAAGA--AAGAGAGAAAATACTATGAAAA--------------------------CTTCACCAGGAGGG-TCTCCTCCCATGAGGGAAGGGGCCTACTTGACACTATCTTAGTGGGAATGCT---ATCTACACCTTACTCCAC-TGGACCCCACCCCTGTCTTGCCCAGCCTCTC--TTGACCAATAGCCT---C----------------AGAGTCCTGGGG-----AGGGGGGGAAGGGGTGCAAGGTCCAG-GGTGAAGAATAAAAGGACGGGCCTTCAGCCACTTGAACACACTTGCTTCTA-CACACCTGA----GATCATCTCCA---------AGCCTCTAGACCTGACGCC-- Rabbit_HBG -----------------------------------------------------------------------------------------------------------------------ATGTTTTGT-----CTTATAATAAA-AATTGCTGAAAATTTTCCCTGGCATTTATCAGAGATAATTTACTCAGAGCCACACTGAGTACAGAAGA--GCAACACC--AATACT--CTGGGTCACCAGTCAGCATACACACTTATCCAGTGGGAAGCACACATTATGT-GGTGCCTACAG------------AGCAAG-ACATTCATGT------GGATGAAAATATATTTTGCTCACGCAGTACAGACATACTTATTTCAAACAGATACAAT-ACATGTAAGTAGAAAATA--AAGTAGATACATGTAA----GTAGA----------------------AAATAAAGTAAGAGTTCAATTCTGTATTATGCTACTTAATACTAA--------------------------------------------------------------------------------------CATATTTAT-----GCATGGAGAGTTATGCTTTATGGGAGTTGTTTTCCCTACACAGTTGTGAATTAGGAATATA-TCTCCTAAAGCCACAAAGGATATATTCACA-A-TCA-------GTATAGGACTTCTCCCCTGG---CCATTCCTAACTGAATG--AGATTTATACTTGTCTCATCAGAAATCTTGGAT-CTGTGCC--------CAAAATTATCTGAATACTTTTC-ATATGTTTGCTTATGCTTTAGCT--ATAATTTGCAGGCATCTATGGTGTTAGTGACTAAAATATAGGAAATGCTGGCAAAAAAAGTCCTAG-ACTATTTAATGGTGAGGAAACAAGAAAAATAGCTAAATAGAAAAATAAATGGGAGAACTCTTTAAAAAAATGAATTGAAAAGGGACAGGA--------CTAACAAAACTTGAGGAGCAGAG-CCCCCTT--------GAGGGGGCCTCTCTGCCACTATCTCAATATATAGTCT---GTGTGAAGCTT-CTCTGCCTAAACCTCACCCCTGCGCTGACCAGCCTTGCC-TTGACCAATAGTCGTTACACAAAAACACTGACCAATAGCCTCAGAGAACACGGCGAAACAAGGGGCCAGATGTCCAGCGAGGAAGAATAAAAGGACGAGCCTTAGAGCAGTTTCACATACTTGCTTCTGAGACATCTGA----GACTATCAGCAAGCTCAGCGAGCTCCTAGACCAGACATC-- Rattus_HBGE TCTCTCAGACTATATTTTCTTTACTGTCATACCACTATATAGAAGGATCCAAGAAATTATTAGAGCTATTATTAGAAAATAAAACCTAGAGATAATTTTCCTAATGTTTAAGTCTGTCCCAGCTGTGACAAGGCATGTGG------ACTGAATGGAAATATCCCTGCCACTTC---------------------------------CAGAGCCTGGTTGAAGCAATCTGAAAGATCAGTCCTTCAGCTATTTTGGTACTTAAC----CGTTGGCACAAAAAAGGC-TGAACCTGTA--------------------GGA---ATGC-----------ACAGTGCTTAGTGACTG---ACTGCAGAAACAGTGTATACACATGGTGGAAAA-TGCCAT-GT-TACAAACAGTAGATTCCTCCATGTAA---TATATATTTTATAGAACATATACTAGTACAGTGAAG-ATAAATGCAGAAGCATATTATACTATACCACAGTCC--------------------------------------------------------------------------------------TTTATTCCT-----ACTTAGAAACTGCAAAGCAATGGGA-CTGCCTTCCCAGGGCTGTTGGGAACTAGGAAGATCATGGCCTAAATCTACAGAAA------------------------------------------ATACATGGCTTGTGAGTAAGAGGCATATTTCTGTCACTTAAGTCCGAAGTCACAGACCTACAAAG----AGCCTCAGACTCACTGGGGCTTT-CC-C-ATCTTTGTCTATGCTTGAACT--TCAGTCTACTAGTCCCTCTAAGTCT-GAAACAAAA----AGGAAAGATTGG-AAAAGACACCCTTG-CAAATCTCCTGTTGGG--------AGAAGGAACCAAACAGAAAGAAAGAAGGAAAGA--AAGAG--TAAATGCTGTGAAAA--------------------------CTGCAGCAGGAGGG-CTCTTTTTCCC-AGGCAGGGGGTCTACTTGACACTATCTTAGTAGGAATGCT---ATCTAAGTCTTACCCTCC-TGGACCCCACCCCTTTCTTTCCCAGCCTGTT--TTGACCAATAGTCT---C----------------AGAGTCCTGGG-------GGAGGGGAAGTGGGGAAAAGTTCAG-GATGAAGAGTAAAAGGACAGGCCTTCAGTCTCTTAAACACACTTGCTTCTG-CACACCTGA----GATTATTTCCA---------AGCTTCTAGACCTCACACC-- Rattus_HBG_T1 ------------------------------------------------------------------------------------------TTCATAATACATAGGACATAATTCTATCCTAGCTGCGATAGTGCATGTGGATGTTACTGCATGGAAATATCACCTGTCACTTCAGAGTTAGGTTACAAACACACAAAAAGTGAAAACAG-GCTG-GTTAAATATACCTGAAAGATTGGTCACTCAGCATTATTAATATTTAACCAGTCATGAGCATAGAGAAGGC-TAAATTCACACCTTTT-TCACCAAGCGGATACACTTTTCCT------------GGGGGCTGCCAATTGCAGGGTGACAGCACAGTTCATTCACGGGGTGGATCA-TGGAAACATGTACATAGAGTAAATTGCTCTGTTTTC----ATGTAT----------------------GAGAGAA-GTAAATGTGGAGACATGCTGTATTTCAACACAGTAA-----------------------------------------------------------------------------GTAT-------TATTT-------ACTCACAAACTGTAATGCATTAGGAATTGCTTTTCTGGGGCTG-TGGATACTAGGAAGATCATAGCCTAAAACTACAGAAAATGCATTCAATGG-TTT-------GCACACCATTTCTTTGTCATTAGTGGCTTGTAAGTAACAGGCATATTTCTGTCACTTATGTCCTAAGTCACAGGCCTACAGAG----ATCCTCAGACTCACTGGGGCTTTCTT---ATCTTTGTCTATGCTTGAACT--TTAATCTACTACTCCATCTAAGTCTGAAATG-AAA----AGGAAAGAATGG-AAAAGATACCTTTA-CAAAT---CTGTTGGG--------AGAAGGGACCAAACAGAAAGAAAGAAGAAAAGA--AAAAGGGTAAATTCCGTGAAAACTGAAAAAAAAAAGAAAAGAAAAAACCTGCAGCTGGAGGG-TCACTTTCTCCGAGGCAGGGGCCCTACTCGACACTATCTTTGTAGGAATGCT---ATCTAAGCCTTACCCTAC-TGGACCCCACCCCTG--------------TC--TTGACCAATAGTCT---C----------------GGAGTCCTGGG-------GATGGGGAAGGGGGGAAAGGTCCAG-GGTGAAGAATAAAAGGACAGGCCTTCAGCCTCTTGAACACACTTGCTTCTG-CACACCTGA----GATCATCTCCA---------AGCTTCTAGACCTCACACC-- Rattus_HBG_T2ps --------------------------------------------------------------------------------------------------------------------------------------------CCAATTTGCTGTTGATATTATTGTAACTGTTTTGTTTTCATTGTTTGAAGCAAGGTCCCCTATAGAACAGGTGATTTTAACTCAATCTGTAACAAAGGATACTTTTCATTGATATTCTTGTACTTCTCCTCTAAAGACATCATCTGTGCTGTTAAAATCATTTAATCTAAGTGGTTAGGTGACAAACC---ACTCTGAAAATAAGCCTTAAACAAAGAGTATGGATAATTTCTTCACTTTCCTTATCTCATTACTGCTAATTTTGGCCATAAAGGCACAAAATCAAA---TATCCAAA--------------------GCTCCAGGCATTATTATCTAGACAGGTCACATTTAGAGAGAAAAGGCCGCTTCCTGTCACATTGACGTAGAAATGTGCA---------------------------------------------------AGACAGACATGAACTACAGATGATTTGTTATGTGCTG----GTGTATCACAGGTGTGGCAGTACAGATGGATCATTATTCAACAGAAATATTAGAAGCTAATTAACTAAATCA-------CTAAAAGTAAATCACTGAAGAGGGCACTTATAGATACAGTAAACAGAATAAAGTTGGCTGTACTGAATAGTAAGATCAGTATTTGAAAGCTCTAGGCTATCCATTATGTGGCCATTCCAATTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTAATTAAGATT---GACAGTTTCTAGCAAATATGCTCTTGCTGGG--------ACAAGGGACTAAGCTCAAGAGAAAAACACGAGA--AAGAAAGACAATTTTTCAAGAG--------------------------CTTCAGCGGTAGGG-TCTCTT---------TGAGAGGCCTAGTTGGCACTATCTTCATGGGAATGCT---ATCTAAAGTTTACCCCAC-TGTACCCCACCC-TGGCTTGCCCAGGCTCCA--TTAACCGATTACTT---C----------------ACAGAACTGGG-------AATGGGGTAAGGGCTAGAAGGCCAGGGGTGAAGAATAAAAAGACAAATCTGGCAGCAGCTGAGCATACTTGCTTGTA-AATACCTTA----AACCTTCTTC----------AAGTTCTTGACAAGACACA-- Spermophilus_HBG -----------------------------------------------------------------------------------------------------------CTGACTCTATAGTTGTTTTGCAAACACTTAGAGAAGG-CAAAGGAGGTGATTCCTAGTACTATGTCTTAGAATAAAACTGGCTGACACTATTTGAAAGATAAATCAT-GCAAGGTCATAATACCTACCAGGAGACCTCCCACCACTCTTCACTGAGCATAGAAAAGCTACCCCCAGAC-CCTGGCTCAAC------------AGCCAGCACCCGCTTAT-----CCAGTGGGAATGCATATT----ACCTGGTAACTACACAATGCATTGACAGGGAATCAA--AAATGTTTGCTCAAAGTA--GACATGCTTTAT-TTA----TTTTA----------------------GACTGAAGCTAGGGTTCAGTCCCATGTTGTGTTACACAACACTAA--------------------------------------------------------------------------------------TGTATTTCT-----GCACTAAAACTGATGCTTTACAGAAATCATTTCCCTAGAACAATTGTGAACTAGGGAGACAGTGGCCTAAACCCATAAAGAATGTATTCAAAGA-TCA-------ATATAGCACTTTTCCCTTGGAAACCATTCCTACCTGTATG--ACATTTATATTTGCTCCATCGGAGATACTAAACATTGTGCT----AAAATAAGAATCTCCTAATAACTGAA-TTTTTTACATTGGTGTCTATACT--TTAACCTCTAGGCTTCTCTGAAACTAGAGACAAAAACATAAAAAAGGCTGG-AAAGGAAGACCCAG-AACATTCTCTGACAAGAGAA--GGAAAACTAGCTA-----AAGAATAAAAAGGAAAA---TTGAAACAATTGACTTGAAACAGCAGAAAG-----ACCCTAAAAAAATGTTAGCAGTGAAA-TTCCTTT--------GAGGGGGCCTCCCTAGCACTATCTTAACAT---GGTT---GTCTGAACCCTGCCCTGCTCAAACCACACCCCCTGTGTGACCAGCCTTGCCTTTGACCAATAGCCTTTGT-------TATTGACCAATAGCCTCAGGATATGTGGTGAGTCAAGGGGCCACAGCGTGGGGGATGAAGAATAAAAGGACGTGCCTTCTAGTAGTCTT---CAGTTGCTTCTGAAGCATCTGA----GATTATCGATA---------AGCTCCTAGACCAGACACC-- Pero_leucopus_HBG -----------------------------------------------------------------------------------TCTTAGGGATGAAGTTCCTAATGTGGGATTCTGTCCTAGCAGAGGCAGTGCATGTGGACTGTTACTAGATAGAAATATCCC-GATACGTCAGAGTTATTTTGTGAACACACAAAAAGTGAAGACAGAGCCTGGTTGAA-CAACCTGAAAGGTCAATCACTCAGCATTCTCAGTACTCAACCTGCCATGAAAACAGAGAAGGC-TGAACCCACAACCTGCATCACCAGGCAGCTACACTCTTCC-----------AGTAGGAATGCCAACTGCATGGTGACTACACAGTCCACTCACAGGGTGGAAAA-GGATGTCATCTATACACAGCAGATTGCTCTACTTCA---AAGTGA-----------------------AATGGAG-GCAAATGTAGAGACATGCTCTACTACACCACAGTAA--------------------------------------------------------------------------------------TTTATTCCT-----ACTCAGAAACAGAA------------CTACTTTCCCAAGGCTG-TGGGAACTAGGGAGACCATGGGCTAAACCTATAGAAAATGCATCCGATGG-TCGATGGTCTGCACACCACTTCTTTATCATGCATAGCTTCTGAATAAGGGGCATATTTCTGCCACTCAGGTGCTGGTTCCCAGGCCTAAAGAG----AGCCTCGTACTCTCTGAGGCTTTCCC---ATGTTTGCCCATGTTTTAGCT--TTAATCTACCGGCCCCTGTAAGGCTAGAGACAGAA----AGGACAGAGTGT-GAAAGATACCCTTG-CAAATCTTCTGTTGGGA-----GGAGAAGGGACTGAAGAAAAGGAAAGAAGGAAAGA--AAGAGAGAAAATACTATGAAAA--------------------------CTTCCCCAGGAGGG-TCTCCTCCCATGAGGGAAGGGGCCTACTTGACACTATCTTAGTGGGAATGCT---ATCTACACCTTACTCCAC-TGGACCCCACCCCTGTCTTGCCCAGCCTCTC--TTGACCAATAGCCT---C----------------AGAGTCCTGGGG-----AGGGGGG-AAGGGGTGCAAGGTCCAG-GGTGAAGAATAAAAGGACGGACCTTCAGCCTCTTGAACACACTTGCTTCTA-CACACCTGA----GATCATCTCCA---------AGCCTCTAGACCTGACGCC-- ; end; [HBG 1kb downstream flanking sequence] #NEXUS begin data; dimensions ntax=8 nchar=1569; format missing=? gap=- datatype=dna ; matrix Rabbit_HBG --ACCCCTTCACTGTAGGACAGAG-CTTCTAGGAAGAAGCTTTATCC-CTCA-AATAATAAT-------GAAAATAATA------AAACTACTCTAAGAA-ATTATTTGTGATGGTATTGAGTTTA--TTTTCCTTGTACTTTTAAATATATGATCCTCAAGGGATTTATTTTTTTTATTGTTGA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGGATGTGTGTGTG----TGTGTGTGTGTGCCTGTGTACTATGTGTGTATA-------------CTCTTCATTTACTTTT---------GCTTGAGCGGTGGATTTCTGATGAGAAAACAGAAGAAC-AAGGCAACAAAAGGGCATGCATGTGAGAATTCTGCACGGGAAACAAGGAGTG---GGGATTTCGGGTGAGGAGGAAGTGCTTTATGGGACAAGAA--TTCAGAACAGGACAGTGTAGAGGAGGGG---ATGAAGTCTTCAGGGAAGTCCTCAGGGGCTGACTTGAGGCAGAGTAGT----------GATG--GGGCTCAATGGAAAGAAGAAATTACAGACCTTAGTAGGTCTAA--GTCTGGGCAAGAGTTCTAATTTCAGTCT----ATTTGGTGCAACACAATTCCCACATGCACCATACTTTCCACAAC---ATTTGTGGGGCTAGATAGGAGGTTGGAGATCTTGAAGAACACAGCAGGGGGTAGTTCTTTTCCAAGTTAACCACAA---ATAGCTGATCC-TGAAGAGATTTATGCTTTAAGTGTTGAGGCTTGCTAGGATAGTTAATTTGATCCCATGCTTCCTGGGCAGACAATGTCCAAGGGTACACATAGAATACAGTACTTCAAGGAAAAAGT----ATCATTGTGAGTAGCTAGAAGGGATGAGTAT---------CTTTGTGGGGG--AAATAAATCATCAG---AA--GGTTAGAAATAAGAA---TGCATGTGATATGTGA----TCAATGGAGCAGCACTGG-GCGGTCAG--AGGGAAACAGGAGGGATTTGTATTGATTAGTTTGCAGTGAAGGTGT-TGTATGACTAAAAG-TTAAT-CCATGTTTATAGGCAGGTGTACAATACAATGACCATGGAAT--TAGGAAGATTAGCCTGGCTGTGG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Mus_C57_HBG AAACTCCATTCCAGTACACTGGCA-ATCCCATGTGTCTATGATGCC--CTCTTTGAGTCCATG------GGGACTG----------CATTGAGAGCACAA-ATTTTGTTTAATAAAATTGATTCT---TAATAA-----CATTGACTTTTTGTTTTTTTTTTGTTTGTTTTTACTTTTATGTT-G--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGAAAGATCTCAA----TGGGCTTGTTGGTG---GGAAAAGACAGAAGAA-----------GAAACCAGATAGAGTGAA------------------------GTATTAGGGAAAGAGCTAAGTT----------------AAAGATGAGAAAGTTTTCTCCAGGAAGAGATGAAAGGGTCTGTTCAGTATAAGATAGGGTACAAAATATTTACTGTGCAAGG-TAAAAAGTAGGGTTGCAGGTGCCAGGAG-GTAAAGAAGACTGGTGAGATGTGCTATTTCT--TTTTTAAGTTTCACTTT--TTGCATATGAGTGAGTGTTTTTCCTGCATAAACATGTGTGTGTCCTACCTGTGTGTGGTGCTCCTGCAAGCCACAATATAGAATTACATCCTCTGGAACTTGAGTTACAGCCAATTGTGAACTGTCAAGTAGGTACTGGGAGCTGAAGTCTGGTCTTTTGAAAGAGCTA---------TTTACCACTGAGCT-CCCTCTCTAGCCC-AAGATCTGCTAGAGATTTTTAAGAGAATACTTTAA--------AATATGAACAAAAAGTATTGTTTTTGATTAGT-TATAT-TTCTGAAAGAGCTATCTTACATCTTGTGAGACTGAGACATTAAAGAAAAGGGGGGAATTGAGTGAAAGTTGGGAACATTCCTGAAAAAAAATTACAGGAGCTACTGTACCTATACT-TTCTTTAGGTATT-TGTAAAGGTTATTCCACTG----GCACAGTGAGAAATAAAGGCTATAGCATCTAGTGGTCCAGATCTTGTAATGGGGTGTAACATGGGCTTACATGAAATTAGCTTACATCTAGCTACTTCAGAAGATA---CACATTTCTAGAGACAAAGAGGAACTAGAGTCAACTTGATAAGAATTTCATCCCACATTCCACTCCATCAAACTGAATCA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Rattus_HBG_T1 -ATTTCCATTCCAGTAGACCAGCA-ATCCATTCTGTCTCTTATACT--CCCTTTGAGCCCATG------GGGACTGGAT---TGGGCATTGAGAGCACAA-ATTTTGTTTAATAAAATTAATTTT---AAATAATTTAACATTGACTTTTTGGGCTTT----GTTTGTATTTACCTTTCTGTT-G--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGAAAGATTATGA----TGGGCTTATTGGTG---GAAAAAGAAGAAGGAA-----------AAAACTAGATAGACTAGATAAACACTAGAGGCAAGGA----TATATTATGGAAAGGGGTAAGTTT---CAAGAAGGATGAAAAGATGAGGAAGTTTTCTCCAGGAA----TGAAAGGGTCTGTTCAGTATAA-ATAGGGTACAAAATATTTACTGTATAAGGGTAAAAACTAGGGTACCAGGTGCCTGG-G-GTAGGGAAGACTAGTGATACATGCTATCTTTGATTTTTAAGTTTCACTTT--ATGGGTATGAG----TGTTTTGCCTGCAT--GTTTGTGTGGGTGCTACATGTGTGTGGGGGTCATGCAGGCCATAACCGATACTCACATGCTCTGGAACTTTAGATACAACCAATTGTGAACTGCCATGTGAATA------------ATCTGGTCCTTTGAAAGATCTA---------TTAACCACTGAGCGACCCTCTCTAGCCT-AAGACCTGCTGGAGAGTTTAAGGAGAGTGCTTTAGGTATCTAGAATATGAACTAAAAGT---GCTTTTAATTAGT-TGCAT-TTTTGAAAGACCTATCTTACATCTTGTGAGACTAAGACATTAAAGTAAAGGGGT-AATTAAATAAAAGTTGGAAACATTCTTGAGAGAG--TTACAGGCCTTACTGTAGCTACATT-TTCTTTAGGTACA-CATGAAGGTTATTTCCCTG----GCATAGTGAGGAATAAAGGCTATGACATTCAGTGTTCCAGATTTTGTAATGGGGTGTAACATGAGCTTACATGAAATGAGCTTTCACTTAGGAGACTAGTAAGAAATGTCAGGATCCTTTGTGAAAAGGGAATATTTCGTGTAAGTGAAGATTATATGATTATA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Rattus_HBG_T2 -ACATTCTTTCCAGTACATTGGCA-CTTCTATGTACCCAAT---CCC-CCCTTTGCCCATGT------GAGGTCTTCAC---TGAAACTTTAGAGTATGATCTTCTCTTTAATAAATTTCATTCTCTTGAGCAACC-AACCCTGGTTTGTTTTGTCCGGTT----TTTAATTAATGTTAAAGCAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGAAATAGATCAG--------TTCACGGGTG---AGAAAAGACTCAGTAT--GAAAGAAGAGCTTTTCTGTACCTTGTGTAGGGACT-GCGGGAATAATGTATAGGTTTGAAAAAAATAGTTG------------------AACACTTGGGGTTAATTCTCATGAGGAAGTGGGCTAGTGGAGAGGAGTTTGACAAGATGTTAA-----AAACTTAAGAACACGTAGTGATAGGGTTAAAAATGAATGTGAAGAAAGAATTATGACACATAATATTGTAGTGGCAGGATTGAGAACTATCCTG----------CCTCACAAAATGCACCGAGACATCTGCTGCTAGTATTGAGCTGTAAGA----------------AAGAAGTTTTGTTAT----TAAAATAATACTGGGAATAAAAACATGATTCTACTAAGGAATCCATGTGTGACTACTGTTAGTCTTTTTATGCTGTTTTAAATACATTTCACCTATGGATTTTTTTCTAATGTTTAAAGAATTCTTTGACAATTTTGATACCCTTCCCTCCACTTCTCCCATATCCATTCCCACTTTCCTACTCTCCCAACCATGTTTCTTCATTAGAAACAAAACAAGACAT-----------------CAGCAACAGCAGCAGC--AGCAGCAACAGCAGCACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGC-AGCAGCAGCAGC--AACAACAACAACAACAAAT----ACCATCAAGTTCATAAACTCTTGGATATGTGACCTTTGACTGGTTGTGGT--CAACCTACCAGGAGTCAGTCACATCC--TTAAAGAAAACTGACTCTAAGATATATCAGTTGTTGATAGCTACTTAACTAGCAATGGGACTTTGTGCCTAAGTCTTCTCTCCATGGCTCTTCATGAGGCAAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Spermophilus_HBG --ACCTCCCACCCATAGTGCAGAA-GATTCAGAGAGAAGCTTTCTTT-TTAATAATAATAAA-------AATAATAAAA------GAATTATTTTAAGAA-ACCTTTTCTGATTACCTTCAGTTCTACTTTTACATGTACTTTTAAATATATAAGCACAAAGGAATTTTATGTT----------A--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGGTTGTGTGTGTG----TATGTGTGTGTG-----------TGTGTATGTG-------------TTCTCCATTTATTTTT---------GCAAGAGATGTAGATTT-TACTGAGAAAATAAAAGAA--------------GGACATGCACATGTGAGTTCCCCAAGGGAAAGCACAGGTGCAGGAGAGCTCTGGTGGGAAGGAAGAGCTCTATGATACAAGGTGTCTCAGAACCAGACAATTTAGAGTAGAGG---AGGAACAATTCAGGGAGGACCCTCAGGGCTAATCTGAGGCACTGTAGC----------AAGAATGGGCTCAATGGAAGAAAATTATTCCAGGC-TTAGGAGGTCAAG--GTTCATGCAGGGGTTGTGATTACATTCT----ATTGGCT----TTTGTTTTTCATA-GCACTA---TTAAAAAAAT---ATTTTTGTAGTTG--TAGTTGGTACAATATCTTTATTTATTTATTTTTATGTGGTGC----CGAGGATCAAACCCA---ATACCTCACACGTGCAAGGAAGTGCTCTACCACTAAGCTACAGCCCTAGCCCCTTTTCATAGCACTTTTTTGGCTAGAGTAGGGGTTGGAAGGGAAAGCTCTTGCCCAAGTCAACTCCAGAGAACTGGCCCTCATTTTTCTGAGGAAATGTATACATTAAGTGTTGGTGTGTGCCTCATGGAGGTTAAATTAGTCCTTAT---GATAGACAATGCCAAAGTG---TGCAAATTATTTGTAGCATGTCAAGGAAAAGAAATTATTATAACCTGCTAGGAGAGGTGGGGATACTTGTGAGGAAAATAAACCAGCAGATCAGTGTGTCTGAGCAAAAGACCAACACTGTGAGAGCAAAAGGAAGTGAGA-AGAATTTATATGGATTAGTTGGGAAGGCAGATTAACAGGAGTTCTCCATATA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Mus_Balbc_HBG --ACTCCATTCCAGTACACTGGCA-ATCCCATGTGTCTATGATGCC--CTCTTTGAGTCCATG------GGGACTGGAT---TAGGCATTGAGAGCACAA-ATTTTGTTTAATAAAATTGATTCT---TAATAA-----CATTGACTTTTTGGGGTTTTTT-GTTCGTTTTTACTTTTATGTT-G--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGAACGATCTCAA----TGGGCTTGTTGGTG---GGAAAAGACAGAAGAA-----------GAAACCAGATAGAGTGAA------------------------GTATTAGGGAAAGGGCTAAGTT----------------AAAGATGAGAAAGTTTTCTCCAGGAAGAGATGAAAGGGTCTGTTCAGTATAAGATAGGGTACAACATATTTACTGTGCAAGG-TAAAAAGTAGGGTTGCAGGTGCCAGGAG-GTAAAGAAGACTGGTGAGATGTGCTATTTCT--TTTTTAAGTTTCACTTT--ATGCATATGAGTGAGTGTTTTTCCTGCATAAACATGTGTGTGTCCTACCTGTGTGTGGTGCTCATGCAAGCCACAATATAGAATTACATCCCCTGAAACTTGAGTTACAGCCAATTGTGAACTGTCAAGTAGGTACTGGGAGCTGAAGTCTGGTCTTTTGAAAGAGCTA---------TTTACCACTGAGCT-CCCTCTCTAGCCC-AAGATCTGCTAGAGATTTTTAAGAGAATACTTTAA--------AATATGAACGAAAAGTATTGTTTTTGATTGGT-TATAT-TTCTGAAAGAGCTATCTTACATCTTGTGAGACTGAGACATTAAAGAAAAGGGGGGAATTGAGTGAAAGTTGGGAACATTCCTGAAAAAAAATTACAGGAGCTACTGTACCTATACT-TTCTTTAGGTATT-TGGAAAGGTTATTCCACTG----GCACAGTGAGAAATAAAGACTATAGCATCCAGTGGTCCAGATCTTGTAATGGGGTGTAACATGGGCTTACATGAAATTAGCTTACATCTAGCTACTTCAGAAGATA---CACATTTCTAGAGACAAAGAGGAACTAGAGTCAACTTGATAAGAATTTCATTCCACATTCCACTCCATCAAACTGA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pero_leucopus_HBG ----------------GCTCCCAT-TCCTAC--AGACCAGCAGTCC-TCTTTTTGAGCACATG------AGGATTGGAC---CAGGCCTTGACAGTACAG-ATTTTGTTTAATAAAGTTGACTTT---CAATAATCTAACATTGG------------------CTTCTTTAAAACTTTATGTT-T--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGGAAGAT--TGG----TGGGCTTATGGGTG---AGGAGAGAAG------------------------GACATATTGAA------------------------GGAGTGTGGTAAGCCTTGAGGAT-------------GAAAAGATGATGAAGAATTCTCAGGGAAGAGAAGAAAGGGTTCATTCAGTATATGGAAGGATATAAAATATTTGCTGTACAAGG-TAAAATCTGGGGTAGTGAGTATTTAGGA-GGAAAGAAGACTAGTGAGACATGCTAAAAA---TTTTTAAGTTTTGCTTT--ATGTGTATGAG----TGTTTTGTGTGCATGTTTGTGTGTGTGTACTACATGTATA-----------CAGACCA--AGAATGGATCACATCCCCTGGAACTGGAGGTACAGCCAGTTGTGAGCTGCCATATGTGTGCTAGGAATTGAAGTCTGGTTCTTTGGATGAGTAACAAATGCCCTTAAACACTGAGCC-CTCTCTCTAGCCCCAAAACATGCTGGAGACTTTAAATAGAAAACCTTATGTATCTAAAAGACAAGCTAGAAGTATTATTTTTAATGAGC-TGTGCATTTTGAAAGAGCTAGCTTATACCTCATGAGACTGATACATTAAAGTAAATGGGG-AACTGAGTGATATGTGGGAACTTTCCTGAAAGAG--TTACAGCAATTACTGTAGCTATACTATCCTTTAGTCATG-TGTGAGTATTACTTCACTG----GCACAGTGAAGAATAATGGCTAAGGCATTCAGTGTTCTGTACCATGTAATGGGATGTAACAAGCCCT-----GAAGTGAGGTTACATTTAGGAGAGGAGTAGTAAATTTGGGGATCATTTGAGAGCAAGGAAGATTTCGTATAAGTGAAGACTGCATGATTATAAGAAGGTCCACACTCTCTAACTACTAAGCATACCTTGGTATCTCGAATAAAGACTACTCAATA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pero_maniculatus_HBG ----------------GCTCCCAT-TCCTAC--AGACCAGCAGTCCCTCTCTTTGAGCACATG------AGGACTGGAC---CAGGCCTTGACAGTACAG-ATTTTGTTTAATAAAGTTGACTTT---CAATAATCTAACATTGG------------------CTTCTTTAAAACTTTATGTT-TGGCTGGGCGGTGGTGGCGCACGCCTTTAATCCCAGCACTCGGGAGGCAGAGCCAGGCCGATCTCTGTGAGTTCGAGGCCAGCCTGGGCTACCAAGTGAGTTCCAGGAAAGGCGCAAAGCTACACAGAGAAACCCTGTCTCGAAAAAACCAAAAAAAAAAAAAAAAAAAACAAAAACAAAAAACAAAAAAAAAAAACCCAACAAAAAACCTTTATGTTTAAGGAAGAT--TGG----TGGGCTTATGGGTG---GGGAGAGAAG------------------------GACATATTGAA------------------------GGAGTGTGGTAAGCCTTGAGGAT-------------GAAAAGATGATGAAGAATTCTCAGGGAAGAGAAGAAAGCGTTCATTCAGTATATGGTAGGATATAAAATATTTGCTGTACAAGG-TAAAATCTGGGGTAGTGAGTATTTAGGA-GGAAAGAAGACTAGTGAGACATGCTAAAAAA--TTTTTAAGTTTTGCTTT--ATGTGTATGAA----TGTTTTGTGTGCATGTTTGTGTGTGT--ACTACATGTGTA-----------CAGACCA--AGAATGGATCACACCCCCTGGAACTGGAGGTACAGACAGTTGTGAGCTGCCATATGTGTGCTAGGAATTGAAGTCTGGTTCTTTGGATGAGTAACAAATACCCTTAAACACTGAGCC-CTCTCTCTAGCCCCAAAACATGCTGGAGACTTTAAATAGAAAACCTTATGTATCTAAAAGACAAGCTAGAAGTATTATTTTTAATGAAC-TGTGCATTTTGAAAGAGCTAGCTTATACCTCATGAGACTGATACATTAAAGTAAATGGGG-AACTGAGTGATATGTGGGAACTTTTCTGAAAGAG--TTACAGCAATTACTGTAGCTATACTATCCTTTAGTCATG-TGTGAGTATTACTTCACTG----GCAC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ; end;