2022
Production of Bovine Colostrum for Human Consumption to Improve Health, Merve Kaplan, Ayşenur Arslan, Hatice Duman, Melda Karyelioğlu, Barış Baydemir, Bilgetekin Burak Günar, Merve Alkan, Ayşe Bayraktar, Halil İbrahim Tosun, Melih Ertürk, Günay Eskici, Rebbeca M. Duar, Bethany M. Henrick, Steven A. Frese, and Sercan Karav
Phenotypic and Genomic Diversification in Complex Carbohydrate-Degrading Human Gut Bacteria, Nicholas A. Pudlo, Karthik Urs, Ryan Crawford, Ali Pirani, Todd Atherly, Roberto Jimenez, Nicolas Terrapon, Bernard Henrissat, Daniel Peterson, Cherie Ziemer, Evan Snitkin, and Eric C. Martens
The Agricultural Genome to Phenome Initiative (AG2PI): creating a shared vision across crop and livestock research communities, Christopher Tuggle, Jennifer Clarke, Jack C. M. Dekkers, David Ertl, Carolyn J. Lawrence-Dill, Eric Lyons, Brenda M. Murdoch, Nicole M. Scott, and Patrick S. Schnable
2021
Bovine Colostrum and Its Potential for Human Health and Nutrition, Aysenur Arslan, Merve Kaplan, Hatice Duman, Ayse Bayraktar, Melih Ertürk, Bethany M. Henrick, Steven A. Frese, and Sercan Karav
Incidence of aflatoxins and fumonisins in grain, masa and corn tortillas in four municipalities in the department of Lempira, Honduras, Jeimy Cabrera-Meraz, Luis Maldonado, Andreia Bianchini, and Raúl Espinal
Heuristic and Hierarchical-Based Population Mining of Salmonella enterica Lineage I Pan-Genomes as a Platform to Enhance Food Safety, Joao Carlos Gomes-Neto, Natasha Pavlovikj, Carmen Cano, Baha Abdalhamid, Gabriel Asad Al-Ghalith, John Dustin Loy, Dan Knights, Peter C. Iwen, Byron D. Chaves, and Andrew K. Benson
Metagenomic insights of the infant microbiome community structure and function across multiple sites in the United States, Giorgio Casaburi, Rebbeca M. Duar, Heather Brown, Ryan D. Mitchell, Sufyan Kazi, Stephanie Chew, Orla Cagney, Robin L. Flannery, Karl G. Sylvester, Steven A. Frese, Bethany M. Henrick, and Samara L. Freeman
Peanut Allergen Reaction Thresholds during Controlled Food Challenges in 2 Canadian Randomized Studies (Canada-ARM1 and PISCES), Derek K. Chu, Joseph L. Baumert, Steve L. Taylor, Julie A. Nordlee, Tina Nham, Jonathan Bramson, Sébastien La Vieille, Michael A. Abbott, Paul Spill, Andrea Marrin, Manel Jordana, and Susan Waserman
Comparisons of oral, intestinal, and pancreatic bacterial microbiomes in patients with pancreatic cancer and other gastrointestinal diseases, Mei Chung, Naisi Zhao, Richard Meier, Devin C. Koestler, Guojun Wu, Erika de Castillo, Bruce J. Paster, Kevin Charpentier, Jacques Izard, Karl T. Kelsey, and Dominique S. Michaud
Editorial: Gluten, From Plant to Plate: Implications for People With Celiac Disease, Michelle Lisa Colgrave, Katharina Anne Scherf, Melanie Downs, and Alberto Caminero
Potential Applications of Endo-B-N-Acetylglucosaminidases From Bifidobacterium longum Subspecies infantis in Designing Value-Added, Next-Generation Infant Formulas, Hatice Duman, Merve Kaplan, Aysenur Arslan, Arif Sercan Sahutoglu, Haci Mehmet Kayili, Steven A. Frese, and Sercan Karav
Development of a Multiplex Real-Time PCR Assay for Predicting Macrolide and Tetracycline Resistance Associated with Bacterial Pathogens of Bovine Respiratory Disease, Enakshy Dutta, John Dustin Loy, Caitlyn A. Deal, Emily L. Wynn, Michael L. Clawson, Jennifer Clarke, and Bing Wang
Host Identity and Geographic Location Significantly Affect Gastrointestinal Microbial Richness and Diversity in Western Lowland Gorillas (Gorilla gorilla gorilla) under Human Care, Katrina Eschweiler, Jonathan B. Clayton, Anneke Moresco, Erin A. McKenney, Larry J. Minter, Mallory J. Suhr Van Haute, William Gasper, Shivdeep Singh Hayer, Lifeng Zhu, Kathryn Cooper, and Kimberly Ange-van Heugten
Overview of the Microbiome Among Nurses study (Micro-N) as an example of prospective characterization of the microbiome within cohort studies, Christine Everett, Chengchen Li, Jeremy E. Wilkinson, Long H. Nguyen, Lauren J. McIver, Kerry Ivey, Jacques Izard, Natalia Palacios, A. Heather Eliassen, Walter C. Willett, Alberto Ascherio, Qi Sun, Shelley S. Tworoger, Andrew T. Chan, Wendy S. Garrett, Curtis Huttenhower, Eric B. Rimm, and Mingyang Song
Phospholipid r ecovery from sweet whey and whey protein concentrate: Use of electrodialysis with bipolar membrane combined with a dilution factor as an ecoefficient method, Mélanie Faucher, Véronique Perreault, Ozan Nazim Ciftci, Sami Gaaloul, and Laurent Bazinet
Characterization of Two Zygnema Strains (Zygnema circumcarinatum SAG 698-1a and SAG 698-1b) and a Rapid Method to Estimate Nuclear Genome Size of Zygnematophycean Green Algae, Xuehuan Feng, Andreas Holzinger, Charlotte Permann, Dirk Anderson, and Yanbin Yin
Molecular Adaptation to Folivory and the Conservation Implications for Madagascar’s Lemurs, Elaine E. Guevara, Lydia K. Greene, Marina B. Blanco, Casey Farmer, Jeannin Ranaivonasy, Joelisoa Ratsirarson, Karine L. Mahefarisoa, Tsiky Rajaonarivelo, Hajanirina H. Rakotondrainibe, Randall E. Junge, Cathy V. Williams, Elodi Rambeloson, Hoby A. Rasoanaivo, Vololonirina Rahalinarivo, Laza H. Andrianandrianina, Jonathan B. Clayton, Ryan S. Rothman, Richard R. Lawler, Brenda J. Bradley, and Anne D. Yoder
Transport of Dietary Anti-Inflammatory Peptide, γ-Glutamyl Valine (γ-EV), across the Intestinal Caco-2 Monolayer, Snigdha Guha, Sophie Alvarez, and Kaustav Majumder
A comprehensive review on bioactive peptides derived from milk and milk products of minor dairy species, Snigdha Guha, Heena Sharma, Gaurav Kr Deshwal, and Priyanka Singh Rao
3D Printing of Human Microbiome Constituents to Understand Spatial Relationships & Shape Parameters in Bacteriology, Jacques Izard, Teklu Kuru Gerbaba, and Shara R.P. Yumul
Time of harvest affects United States-grown Aronia mitschurinii berry polyphenols, ◦Brix, and acidity, Erica S. King, Junhyo Cho, Hengjing Li, Xueqi Jiang, Annika K. Madler, Mikala K. Weishair, Susan Glenn, Mark H. Brand, Changmou Xu, and Bradley W. Bolling
The International Scientific Association for Probiotics and Prebiotics (ISAPP) consensus statement on fermented foods, Maria L. Marco, Mary Ellen Sanders, Michael Gänzle, Marie Claire Arrieta, Paul D. Cotter, Luc De Vuyst, Colin Hill, Wilhelm Holzapfel, Sarah Lebeer, Dan Merenstein, Gregor Reid, Benjamin E. Wolfe, and Robert Hutkins
Dietary fiber intake, the gut microbiome, and chronic systemic inflammation in a cohort of adult men, Wenjie Ma, Long H. Nguyen, Mingyang Song, Dong D. Wang, Eric A. Franzosa, Yin Cao, Amit Joshi, David A. Drew, Raaj Mehta, Kerry L. Ivey, Lisa L. Strate, Edward L. Giovannucci, Jacques Izard, Wendy Garrett, Eric B. Rimm, Curtis Huttenhower, and Andrew T. Chan
Interspecies variation in hominid gut microbiota controls host gene regulation, Amanda L. Muehlbauer, Allison L. Richards, Adnan Alazizi, Michael B. Burns, Andres Gomez, Jonathan B. Clayton, Klara Petrzelkova, Camilla Cascardo, Justyna Resztak, Xiaoquan Wen, Roger Pique-Regi, Francesca Luca, and Ran Blekhman
Impact of Probiotic B. infantis EVC001 Feeding in Premature Infants on the Gut Microbiome, Nosocomially Acquired Antibiotic Resistance, and Enteric Inflammation, Marielle Nguyen, Heaven Holdbrooks, Prasanthi Mishra, Maria A. Abrantes, Sherri Eskew, Mariajamiela Garma, Cyr-Geraurd Oca, Carrie McGuckin, Cynthia B. Hein, Ryan D. Mitchell, Sufyan Kazi, Giorgio Casaburi, Heather K. Brown, Steven A. Frese, and Bethany M. Henrick
Bioactivity of Cooked Standard and Enriched Whole Eggs from White Leghorn and Rhode Island Red in Exhibiting In-Vitro Antioxidant and ACE-Inhibitory Effects, Emerson Nolasco, Mike Naldrett, Sophie Alvarez, Philip E. Johnson, and Kaustav Majumder
Temporal Dynamics of Chronic Inflammation on the Cecal Microbiota in IL-10-/- Mice, Anne-Marie C. Overstreet, Amanda Ramer-Tait, Jan S. Suchodolski, Jesse M. Hostetter, Chong Wang, Albert E. Jergens, Gregory J. Phillips, and Michael J. Wannemeuhler
ProkEvo: an automated, reproducible, and scalable framework for high-throughput bacterial population genomics analyses, Natasha Pavlovikj, Joao Carlos Gomes-Neto, Jitender S. Deogun, and Andrew K. Benson
Genome-Wide Identification and Comparative Analysis of ARF Family Genes in Three Apiaceae Species, Qiaoying Pei, Nan Li, Qihang Yang, Tong Wu, Shuyan Feng, Xuehuan Feng, Zange Jing, Rong Zhou, Ke Gong, Tong Yu, Zhen Wang, and Xiaoming Song
Metabolic profiling of historical and modern wheat cultivars using proton nuclear magnetic resonance spectroscopy, Rachana Poudel, Fatema Bhinderwala, Martha Morton, Robert Powers, and Devin J. Rose
Performance of two handheld NIR spectrometers to quantify crude protein of composite animal forage and feedstuff, Isaac R. Rukundo, Mary-Grace C. Danao, James C. MacDonald, Randy L. Wehling, and Curtis L. Weller
Effect of high-pressure processing on the microbial load and functionality of sugar-cookie dough, Luis Sabillón, Jayne E. Stratton, Devin Rose, Kent M. Eskridge, and Andreia Bianchini
Genetic variability and evolutionary dynamics of atypical Papaya ringspot virus infecting Papaya, Anam Saleem, Zahid Ali, Shyi-Dong Yeh, Wajeeha Saeed, Amna Binat Imdad, Muhammad Faheem Akbar, Richard E. Goodman, and Saadia Naseem
A representation learning model based on variational inference and graph autoencoder for predicting lncRNA‑disease associations, Zhuangwei Shi, Han Zhang, Chen Jin, Xiongwen Quan, and Yanbin Yin
The Sulfur Microbial Diet and Risk of Colorectal Cancer by Molecular Subtypes and Intratumoral Microbial Species in Adult Men, Daniel R. Sikavi, Long H. Nguyen, Koichiro Haruki, Tomotaka Ugai, Wenjie Ma, Dong D. Wang, Kelsey N. Thompson, Yan Yan, Tobyn Branck, Jeremy E. Wilkinson, Naohiko Akimoto, Rong Zhong, Mai Chan Lau, Kosuke Mima, Keisuke Kosumi, Teppei Morikawa, Eric B. Rimm, Wendy S. Garrett, Jacques Izard, Yin Cao, Mingyang Song, Curtis Huttenhower, Shuji Ogino, and Andrew T. Chan
Comparative analysis of long noncoding RNAs in angiosperms and characterization of long noncoding RNAs in response to heat stress in Chinese cabbage, Xiaoming Song, Jingjing Hu, Tong Wu, Qihang Yang, Xuehuan Feng, Hao Lin, Shuyan Feng, Chunlin Cui, Ying Yu, Rong Zhou, Ke Gong, Tong Yu, Qiaoying Pei, and Nan Li
Comprehensive analysis of SSRs and database construction using all complete gene-coding sequences in major horticultural and representative plants, Xiaoming Song, Qihang Yang, Yun Bai, Ke Gong, Tong Wu, Tong Yu, Qiaoying Pei, Weike Duan, Zhinan Huang, Zhiyuan Wang, Zhuo Liu, Xi Kang, Wei Zhao, and Xiao Ma
Integration of the metabolome and transcriptome reveals the metabolites and genes related to nutritional and medicinal value in Coriandrum sativum, WU Tong, FENG Shu-yan, YANG Qi-hang, Preetida J. BHETARIYA, GONG Ke, CUI Chun-lin, SONG Jie, PING Xiao-rui, PEI Qiao-ying, YU Tong, and SONG Xiao-ming
Single-dose oral challenges to validate eliciting doses in children with cow’s milk allergy, Paul J. Turner, Yvonne M. d'Art, Bettina Duca, Sophia A. Chastell, Guadalupe Marco-Martin, Rosialzira N. Vera-Berrios, Olaya Alvarez, Raphaëlle Bazire, Pablo Rodríguez del Río, Marta Vazquez-Ortiz, Joseph L. Baumert, Ronald van Ree, Clare E.N. Mills, Montserrat Fernandez-Rivas, and Jonathan O.B. Hourihane
Effects of Ball Milling Combined With Cellulase Treatment on Physicochemical Properties and in vitro Hypoglycemic Ability of Sea Buckthorn Seed Meal Insoluble Dietary Fiber, Yulian Zhu, Xiaolong Ji, Michael Yuen, Tina Yuen, Hywel Yuen, Min Wang, Deandrae Smith, and Qiang Peng
Composition analysis and antioxidant activity evaluation of a high purity oligomeric procyanidin prepared from sea buckthorn by a green method, Yulian Zhu, Michael Yuen, Wenxia Li, Hywel Yuen, Min Wang, Deandrae Smith, and Qiang Peng
2020
Point-of-Decision Prompts Increase Dietary Fiber Content of Consumers’ Food Choices in an Online Grocery Shopping Simulation, Kristina Arslain, Christopher Gustafson, and Devin J. Rose
Point-of-Decision Prompts Increase Dietary Fiber Content of Consumers’ Food Choices in an Online Grocery Shopping Simulation, Kristina Arslain, Christopher Gustafson, and Devin J. Rose
Expression profiling of human milk derived exosomal microRNAs and their targets in HIV‐1 infected mothers, Muhammad Atif Zahoor; McMaster University, Hamilton; Bethany M. Henrick; Chris P. Verschoor; Alash’le Abimiku; Sophia Osawe; and Kenneth L. Rosenthal
Identification of Simplified Microbial Communities That Inhibit Clostridioides difficile Infection through Dilution/Extinction, Jennifer M. Auchtung, Eva C. Preisner, James Collins, Armando I. Lerma, and Robert A. Britton
Desiccation tolerance in streptophyte algae and the algae to land plant transition: evolution of LEA and MIP protein families within the Viridiplantae, Burkhard Becker, Xuehuan Feng, Yanbin Yin, and Andreas Holzinger
The Trait Repertoire Enabling Cyanobacteria to Bloom Assessed through Comparative Genomic Complexity and Metatranscriptomics, Huansheng Cao, Yohei Shimura, Morgan M. Steffen, Zhou Yang, Jingrang Lu, Allen Joel, Landon Jenkins, Masanobu Kawachi, Yabin Yin, and Ferran Garcia-Pichel
Polyanhydride Nanoparticles Induce Low Inflammatory Dendritic Cell Activation Resulting in CD8+ T Cell Memory and Delayed Tumor Progression, Ross Darling, Sujata Senapati, John Christiansen, Luman Liu, Amanda E. Ramer-Tati, Balaji Narasimhan, and Michael Wannemuehler
Comparative Genome Analysis of Bifidobacterium longum subsp. infantis Strains Reveals Variation in Human Milk Oligosaccharide Utilization Genes among Commercial Probiotics, Rebbeca M. Duar, Giorgio Casaburi, Ryan D. Mitchell, Lindsey N.C. Scofield, Camila A. Ortega Ramirez, Daniela Barile, Bethany M. Henrick, and Steven A. Frese
Integrating the Ecosystem Services Framework to Define Dysbiosis of the Breastfed Infant Gut: The Role of B. infantis and Human Milk Oligosaccharides, Rebbeca M. Duar, Bethany M. Henrick, Giorgio Casaburi, and Steven A. Frese
Phytochemical characterization of ultrasound-processed sorghum sprouts for the use in functional foods, Sadia Hassan, Muhammad Imran, Muhammad Haseeb Ahmad, Muhammad Imran Khan, Changmou XU, Muhammad Kamran Khan, and Niaz Muhammad
A high-throughput LC-MS/MS method for the measurement of the bile acid/salt content in microbiome-derived sample sets, Thomas D. Horvath, Sigmund J. Haidacher, Kathleen M. Hoch, Jennifer M. Auchtung, and Anthony M. Haag
Integration of sodium hypochlorite pretreatment with co-immobilized microalgae/bacteria treatment of meat processing wastewater, Xinjuan Hu, Yulie Meneses, and Ashraf Aly Hassan
Stool microbiome, pH and short/branched chain fatty acids in infants receiving extensively hydrolyzed formula, amino acid formula, or human milk through two months of age, Car Reen Kok, Bradford Brabec, Maciej Chichlowski, Cheryl L. Harris, Nancy Moore, Jennifer L. Wampler, Jon Vanderhoof, Devin Rose, and Robert W. Hutkins
HumidOSH: A self-contained environmental chamber with controls for relative humidity and fan speed, Soon Kiat Lau and Jeyamkondan Subbiah
TDT Sandwich: An open source dry heat system for characterizing the thermal resistance of microorganisms, Soon Kiat Lau and Jeyamkondan Subbiah
Prebiotic-Induced Anti-tumor Immunity Attenuates Tumor Growth, Yan Li, Lisa Elmen, Igor Segota, Yibo Xian, Roberto Tinoco, Tinoco Feng, Yu Fujita, Rafael R. Segura Munoz, Robert J. Schmaltz, Linda M. Bradley, Amanda Ramer-Tait, Raphy Zarecki, Tao Long, Scott N. Peterson, and Ze’ev A. Ronai
Microbiota in vitro modulated with polyphenols shows decreased colonization resistance against Clostridioides difficile but can neutralize cytotoxicity, Aleksander Mahnic, Jennifer M. Auchtung, Nataša Poklar Ulrih, Robert A. Britton, and Maja Rupnik
Insights into the Genetic Architecture of Bran Friability and Water Retention Capacity, Two Important Traits for Whole Grain End-Use Quality in Winter Wheat, Sviatoslav Navrotskyi, Vikas Belamkar, P. Stephen Baenziger, and Devin J. Rose
Association Between Sulfur-Metabolizing Bacterial Communities in Stool and Risk of Distal Colorectal Cancer in Men, Long H. Nguyen, Wenjie Ma, Dong D. Wang, Yin Cao, Himel Mallick, Teklu K. Gerbaba, Jason Lloyd-Price, Galeb Abu-Ali, A. Brantley Hall, Daniel Sikavi, David A. Drew, Raaj S. Mehta, Cesar Arze, Amit D. Joshi, Yan Yan, Tobyn Branck, Casey DuLong, Kerry L. Ivey, Shuji Ogino, Eric B. Rimm, Mingyang Song, Wendy S. Garrett, Jacques Izard, Cutis Huttenhower, and Andrew T. Chan
Comprehensive identification and analyses of the Hsf gene family in the whole-genome of three Apiaceae species, Qiaoying Pei, North China University of Science and Technology, Tong Wu, Qihang Yang, Ke Gong, Rong Zhou, Chunlin Cui, Ying Yu, Wei Zhao, Xi Kang, Rui Cao, and Xiaoming Song
Determinations of the peroxidative susceptibilities of cod liver oils by a newly-developed 1H NMR-based method: resistance of an antioxidant-fortified product isolated from pre-fermented sources, B. C. Percival, R. Zbasnik, V. Schlegel, M. Edgar, J. Zhang, and M. Grootveld
Evaluations of the Peroxidative Susceptibilities of Cod Liver Oils by a 1H NMR Analysis Strategy: Peroxidative Resistivity of a Natural Collagenous and Biogenic Amine-Rich Fermented Product, Benita C. Percival, Angela Wann, Richard Zbasnik, Vicki Schlegel, Mark Edgar, Jie Zhang, Gilbert Ampem, Philippe Wilson, Adam Le Gresley, Declan Naughton, and Martin Gootveld
Mucosa-Associated Microbiota in Barrett’s Esophagus, Dysplasia, and Esophageal Adenocarcinoma Differ Similarly Compared With Healthy Controls, Shajan Peter; Amanda Pendergraft,; William VanDerPol; Mel Wilcox; Kondal R. Kyanam Kabir Baig; Casey Morrow; Jacques Izard; and Peter J. Mannon
Effect of pH and Heat Treatment on the Antioxidant Activity of Egg White Protein-Derived Peptides after Simulated In-Vitro Gastrointestinal Digestion, Priyanka Singh Rao, Emerson Nolasco, Akihiro Handa, Michael J. Naldrett, Sophie Alvarez, and Kaustav Majumder
A mouse model of human TLR4 D299G/T399I SNPs reveals mechanisms of altered LPS and pathogen responses, Katharina Richard, Kurt H. Piepenbrink, Kari Ann Shirey, Archana Gopalakrishnan, Shreeram Nallar, Daniel J. Prantner, Darren J. Perkins, Wendy Lai, Alexandra Vik, Vladimir Y. Toshchakov, Chiguang Feng, Rachel Fanaroff, Andrei E. Medvedev, Jorge C.G. Blanco, and Stefanie N. Vogel
Effect of scanning samples through polypropylene film on predicting nitrogen content of forage using handheld NIR, Isaac R. Rukundo, Mary-Grace C. Danao, Robert B. Mitchell, Steven D. Masterson, Randy Wehling, and Curtis L. Weller
Stearidonic-Enriched Soybean Oil Modulates Obesity, Glucose Metabolism, and Fatty Acid Profiles Independently of Akkermansia muciniphila, Rafael R. Segura Munoz, Truyen Quach, João C. Gomes-Neto, Yibo Xian, Pamela A. Pena, Steven Weier, Michael A. Pellizzon, Hatem Kittana, Liz A. Cody, Abby L. Geis, Kari Heck, Robert J. Schmaltz, Laure B. Bindels, Edgar B. Cahoon, Andrew K. Benson, Tom Elmo Clemente, and Amanda E. Ramer-Tait
Wild primate microbiomes prevent weight gain in germ-free mice, Dimitrios N. Sidiropoulos, Gabriel A. Al-Ghalith, Robin R. Shields-Cutler, Tonya L. Ward, Abigail J. Johnson, Pajau Vangay, Dan Knights, Purna C. Kashyap, Yibo Xian, Amanda E. Ramer-Tait, and Jonathan B. Clayton
Chronological set of E. coli O157:H7 bovine strains establishes a role for repeat sequences and mobile genetic elements in genome diversification, Eliot Stanton, Taylor A. Wahlig, Dongjin Park, and Charles W. Kaspar
The gut bacterium Extibacter muris produces secondary bile acids and influences liver physiology in gnotobiotic mice, Theresa Streidl, Isabel Karkossa, Rafael R. Segura Munoz, Claudia Eberl, Alex Zaufel, Johannes Plagge, Robert Schmaltz, Kristin Schubert, Marijana Basic, Kai Markus Schneider, Mamdouh Afify, Christian Trautwein, Rene Tolba, Barbel Stecher, Heidi L. Doden, Jason M. Ridlon, Josef Ecker, Tarek Moustafa, Martin von Bergen, Amanda Ramer-Tait, and Thomas Clavel
The International Scientific Association for Probiotics and Prebiotics (ISAPP) consensus statement on the definition and scope of synbiotics, Kelly S. Swanson, Glenn R. Gibson, Robert W. Hutkins, Raylene A. Reimer, Gregor Reid, Kristin Verbeke, Karen P. Scott, Hannah D. Holscher, Meghan B. Azad, Nathalie M. Delzenne, and Mary Ellen Sanders
Genetic and Functional Analyses of Virulence Potential of an Escherichia coli O157:H7 Strain Isolated From Super-Shedder Cattle, Lin Teng, Shinyoung Lee, Dongjin Park, and Kwangcheol Casey Jeong
Polyphenolic fractions isolated from red raspberry whole fruit, pulp, and seed differentially alter the gut microbiota of mice with diet-induced obesity, Yibo Xian, Rong Fan, Jing Shao, Ashley Mulcahy Toney, Soonkyu Chung, and Amanda E. Ramer-Tait
AcrFinder: genome mining anti-CRISPR operons in prokaryotes and their viruses, Haidong Yi, Le Huang, Bowen Yang, Javi Gomez, Han Zhang, and Yanbin Yin
Sex Bias in Gut Microbiome Transmission in Newly Paired Marmosets (Callithrix jacchus), Lifeng Zhu, Jonathan B. Clayton, Mallory J. Suhr Van Haute, Qinnan Yang, Haley R. Hassenstab, Aaryn C. Mustoe, Dan Knights, Andrew K. Benson, and Jeffrey A. French
Fecal Short-Chain Fatty Acid Concentrations Increase in Newly Paired Male Marmosets (Callithrix jacchus), Lifeng Zhu, Mallory J. Suhr Van Haute, Haley R. Hassenstab, Caroline Smith, Devin J. Rose, Aaryn C. Must, Andrew K. Benson, and Jeffrey A. French
2019
Histone acetylation increases in response to ferulic, gallic, and sinapic acids acting synergistically in vitro to inhibit Candida albicans yeast‐to‐hyphae transition, Cristiane R. S. Câmara, Qin-Yin Shi, Matthew Pedersen, Richard Zbasnik, Kenneth Nickerson, and Vicki Schlegel
Long-term use of antibiotics and risk of colorectal adenoma, Yin Cao, Kana Wu, Raaj Mehta, David A. Drew, Mingyang Song, Paul Lochhead, Long H. Nguyen, Jacques Izard, Charles S. Fuchs, Wendy S. Garrett, Curtis Huttenhower, Shuji Ogino, Edward L. Giovannucci, and Andrew T. Chan
Keeping Allergen Names Clear and Defined, Sanny K. Chan, Anna Pomés, Christiane Hilger, Janet M. Davies, Geoffrey Mueller, Annette Kuehn, Andreas L. Lopata, Gabriele Gadermaier, Marianne van Hage, Monika Raulf, and Richard E. Goodman
The Microbiomes of Pancreatic and Duodenum Tissue Overlap and are Highly Subject Specific but Differ between Pancreatic Cancer and Non-Cancer Subjects, Erika del Castillo, Richard Meier, Mei Chung, Devin C. Koestler, Tsute CHen, Bruce J. Paster, Kevin P. Charpentier, Karl T. Kelsey, Jacques Izard, and Dominique S. Michaud
Genomic Variations Underlying Speciation and Niche Specialization of Shewanella baltica, Jie Deng, Jennifer M. Auchtung, Konstantinos T. Konstantinidis, Ingrid Brettar, Manfred G. Höfle, and James M. Tiedje
Orphan Genes Shared by Pathogenic Genomes Are More Associated with Bacterial Pathogenicity, Sarah Entwistle and Yanbin Yin
Mycoprotein: The Future of Nutritious Nonmeat Protein, a Symposium Review, Tim JA Finnigan, Benjamin T. Wall, Peter J. Wilde, Francis B. Stephens, Steve Taylor, and Marjorie R. Freedman
Cell Wall Enzymes in Zygnema circumcarinatum UTEX 1559 Respond to Osmotic Stress in a Plant-Like Fashion, Elisabeth Fitzek, Lauren Orton, Sarah Entwistle, W. Scott Grayburn, Catherine Ausland, Melvin R. Duvall, and Yanbin Yin
Formation of Low-Density and Free-Flowing Hollow Microparticles from Butter and Fractionated Palm Oil Mixture, Joshua Gudeman, Junsi Yang, and Ozan Ciftci
TLR10 Senses HIV-1 Proteins and Significantly Enhances HIV-1 Infection, Bethany M. Henrick, Xiao-Dan Yao, Muhammad Atif Zahoor, Alash’le Abimiku, Sophia Osawe, and Kenneth L. Rosenthal
Nitrogen, Cobalt Co-doped Fluorescent Magnetic Carbon Dots as Ratiometric Fluorescent Probes for Cholesterol and Uric Acid in Human Blood Serum, Shan Huang, Erli Yang, Jiandong Yao, Xu Chu, Yi Liu, Yue Zhang, and Qi Xiao
Role of Dietary Flavonoid Compounds in Driving Patterns of Microbial Community Assembly, Kerry L. Ivey, Andrew T. Chan, Jacques Izard, Aedin Cassidy, Geraint B. Rogers, and Eric B. Rimm
N-glycans from human milk glycoproteins are selectively released by an infant gut symbiont in vivo, Sercan Karav, Giorgio Casaburi, Aysenur Arslan, Merve Kaplan, Berfin Sucu, and Steven Frese
Gene Expression Value Prediction Based on XGBoost Algorithm, Wei Li, Yanbin Yin, Xiongwen Quan, and Han Zhang
Gut microbiota dependent anti-tumor immunity restricts melanoma growth in Rnf5−/− mice, Yan Li, Roberto Tinoco, Lisa Elmén, Igor Segota, Yibo Xian, Yu Fujita, Avinash Sahu, Raphy Zarecki, Kerrie Marie, Yongmei Feng, Ali Khateb, Dennie T. Frederick, Shiri K. Ashkenazi, Hyungsoo Kim, Eva Guijarro Perez, Chi-Ping Day, Rafael S. Segura Muñoz, Robert Schmaltz, Shibu Yooseph, Miguel A. Tam, Tongwu Zhang, Emily Avitan-Hersh, Lihi Tzur, Shoshana Roizman, Ilanit Boyango, Gil Bar-Sela, Amir Orian, Randal J. Kaufman, Marcus Bosenberg, Colin R. Goding, Bas Baaten, Mitchell P. Levesque, Reinhard Dummer, Kevin Brown, Glenn Merlino, Eytan Ruppin, Keith Flaherty, Amanda Ramer-Tait, Tao Long, Scott N. Peterson, Linda M. Bradley, and Ze’ev A. Ronai
Prophylactic effects of isomaltodextrin in a Balb/c mouse model of egg allergy, Yoshinori Mine, Yan Jin, Hua Zhang, Prithy Rupa, Kaustav Majumder, Takeo Sakurai, Yoshifumi Taniguchi, Ryodai Takagaki, Hikaru Watanabe, and Hitoshi Mitsuzumi
Experimental Evidence for Adaptation to Species-Specific Gut Microbiota in House Mice, Andrew H. Moeller, João C. Gomes-Neto, Sara Mantz, Hatem Kittana, Rafael R. Segura Munoz, Robert J. Schmaltz, Amanda E. Ramer-Tait, and Michael W. Nachman
Postharvest heat treatments to inhibit Penicillium digitatum growth and maintain quality of Mandarin (Citrus reticulata blanco), Diana B. Queb-Gonzalez, Aurelio Lopez-Malo, María E. Sosa-Morales, and Rossana Villa-Rojas
Physicochemical properties and rheological behavior of flours and starches from four bean varieties for gluten-free pasta formulation, Hollman Motta Romero and Yue Zhang
The structure of PilA from Acinetobacter baumannii AB5075 suggests a mechanism for functional specialization in Acinetobacter type IV pili, Leslie A. Ronish, Erik Lillehoj, James K. Fields, Eric J. Sundberg, and Kurt Piepenbrink
Corrigendum: Use of UV Treated Milk Powder to Increase Vaccine Efficacy in the Elderly, Sara Schaefer, Kasper Arthur Hettinga, James Cullor, J. Bruce German, and Bethany M. Henrick
Hydrodistillation Extraction Kinetics Regression Models for Essential Oil Yield and Composition in Juniperus virginiana, J. excelsa, and J. sabina, Ivanka B. Semerdjieva, Santosh Shiwakoti, Charles L. Cantrell, Valtcho D. Zheljazkov, Tess Astatkie, Vicki L. Schlegel, and Tzenka Radoukova
Antimicrobial peptide identification using multi-scale convolutional network, Xin Su, Jing Xu, Yanbin Yin, Xiongwen Quan, and Han Zhang