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2020

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Representation of features as images with neighborhood dependencies for compatibility with convolutional neural networks, Omid Bazgir, Ruibo Zhang, Saugato Rahman Dhruba, Raziur Rahman, Souparno Ghosh, and Ranadip Pal

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The role of topography, soil, and remotely sensed vegetation condition towards predicting crop yield, Trenton E. Franz, Sayli Pokal, Justin P. Gibson, Yuzhen Zhou, Hamed Gholizadeh, Fatima Amor Tenorio, Daran Rudnick, Derek M. Heeren, Matthew F. McCabe, Matteo Ziliani, Zhenong Jin, Kaiyu Guan, Ming Pan, John Gates, and Brian Wardlow

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Association between baseline abundance of Peptoniphilus, a Gram-positive anaerobic coccus, and wound healing outcomes of DFUs, Kyung R. Min, Adriana Galvis, Katherine L. Baquerizo Nole, Rohita Sinha, Jennifer Clarke, Robert S. Kirsner, and Dragana Ajdic

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Exact Distribution of Linkage Disequilibrium in the Presence of Mutation, Selection, or Minor Allele Frequency Filtering, Jiayi Qu, Stephen D. Kachman, Dorian Garrick, Rohan L. Fernando, and Hao Cheng

2019

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Cost-effective Surveillance for Infectious Diseases Through Specimen Pooling and Multiplex Assays, Christopher Bilder, Joshua Tebbs, and Christopher McMahan

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Recursive model for dose-time responses in pharmacological studies, Saugato Rahman Dhruba, Aminur Rahman, Raziur Rahman, Souparno Ghosh, and Ranadip Pal

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Soil Fauna Accelerate Dung Pat Decomposition and Nutrient Cycling into Grassland Soil, Kenneth S. Evans, Martha Mamo, Ana Wingeyer, Walter Schacht, Kent Eskridge, Jeff Bradshaw, and Daniel Ginting

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Post-ER Stress Biogenesis of Golgi Is Governed by Giantin, Cole P. Frisbie, Alexander Y. Lushnikov, Alexey V. Krasnoslobodtsev, Jean-Jack Riethoven, Jennifer L. Clarke, Elena I. Stepchenkova, and Armen Petrosyan

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Genomic Prediction Using Canopy Coverage Image and Genotypic Information in Soybean via a Hybrid Model, Reka Howard and Diego Jarquin

2018

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Application of transfer learning for cancer drug sensitivity prediction, Saugato Rahman Dhruba, Raziur Rahman, Kevin Matlock, Souparno Ghosh, and Ranadip Pal

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Characterization of Soybean Protein Adhesives Modified by Xanthan Gum, Chen Feng, Fang Wang, Zheng Xu, Huilin Sui, Yong Fang, Xiaozhi Tang, and Xinchun Shen

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Investigation of model stacking for drug sensitivity prediction, Kevin Matlock, Carlos De Niz, Raziur Rahman, Souparno Ghosh, and Ranadip Pal

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Development of 11-Plex MOL-PCR Assay for the Rapid Screening of Samples for Shiga Toxin-Producing Escherichia coli, Travis A. Woods, Heather M. Mendez, Sandy Ortega, Xiaorong Shi, David Marx, Jianfa Bai, Rodney A. Moxley, T. G. Nagaraja, Steven W. Graves, and Alina Deshpande

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Existing and Potential Statistical and Computational Approaches for the Analysis of 3D CT Images of Plant Roots, Zheng Xu, Camilo Valdes, and Jennifer Clarke

2017

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Perennial warm-season grasses for producing biofuel and enhancing soil properties: An alternative to corn residue removal, Humberto Blanco-Canqui, Robert B. Mitchell, Virginia L. Jin, Marty R. Schmer, and Kent M. Eskridge

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Trans-ancestry Fine Mapping and Molecular Assays Identify Regulatory Variants at the ANGPTL8 HDL-C GWAS Locus, Maren E. Cannon, Qing Duan, Ying Wu, Monica Zeynalzadeh, Zheng Xu, Antti J. Kangas, Pasi Soininen, Mika Ala-Korpela, Mete Civelek, Aldons J. Lusis, Johanna Kuusisto, Francis S. Collins, Michael Boehnke, Hua Tang, Markku Laakso, Yun Li, and Karen L. Mohlke

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Evaluating Current Practices in Shelf Life Estimation, Robert Capen, David Christopher, Patrick Forenzo, Kim Huynh-Ba, David LeBlond, Oscar Liu, John O'Neill, Nate Patterson, Michelle Quinlan, Radhika Rajagopalan, James Schwenke, and Walter W. Stroup

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Joint hierarchical models for sparsely sampled high-dimensional LiDAR and forest variables, Andrew O. Finley, Sudipto Banerjee, Yuzhen Zhou, Bruce D. Cook, and Chad Babcock

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Application of Response Surface Methods To Determine Conditions for Optimal Genomic Prediction, Reka Howard, Alicia L. Carriquiry, and William D. Beavis

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Increasing Genomic-Enabled Prediction Accuracy by Modeling Genotype x Environment Interactions in Kansas Wheat, Diego Jarquin, Cristiano Lemas da Silva, R. Chris Gaynor, Jesse Poland, Allan Fritz, Reka Howard, Sarah Battenfield, and José Crossa

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A Bayes Interpretation of Stacking for M-Complete and M-Open Settings, Tri Le and Bertrand S. Clarke

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Assessing the Impact of Retreat Mechanisms in a Simple Antarctic Ice Sheet Model Using Bayesian Calibration, Kelsey L. Ruckert, Gary Shaffer, David Pollard, Yawen Guan, Tony E. Wong, Chris E. Forest, and Klaus Keller

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Generalized Confidence Intervals Compatible with the Min Test for Simultaneous Comparisons of One Subpopulation to Several Other Subpopulations, Julia N. Soulakova

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Impact of Menthol Smoking on Nicotine Dependence for Diverse Racial/Ethnic Groups of Daily Smokers, Julia N. Soulakova and Ryan R. Danczak

2016

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EnsCat: clustering of categorical data via ensembling, Bertrand S. Clarke, Saeid Amiri, and Jennifer L. Clarke

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The impact of hair coat color on longevity of Holstein cows in the tropics, C. N. Lee, K. S. Baek, and A. Parkhurst

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Genomic Bayesian Prediction Model for Count Data with Genotype x Environment Interaction, Abelardo Montesinos-López, Osval A. Montesinos-López, José Crossa, Juan Burgueño, Kent M. Eskridge, Esteban Falconi-Castillo, Xinyao He, Pawan Singh, and Karen Cichy

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A Genomic Bayesian Multi-trait and Multi-environment Model, Osval A. Montesinos-López, Abelardo Montesinos-López, José Crossa, Fernando Toledo, Oscar Pérez-Hernández, Kent M. Eskridge, and Jessica Rutkoski

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Sex-specific hippocampal 5-hydroxymethylcytosine is disrupted in response to acute stress, Ligia A. Papale, Sisi Li, Andy Madrid, Qi Zhang, Li Chen, Pankaj Chopra, Peng Jin, Sunduz Keles, and Reid S. Alisch

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Species discovery and diversity in Lobocriconema (Criconematidae: Nematoda) and related plant-parasitic nematodes from North American ecoregions, Tom Powers, Ernest C. Bernard, T. Harris, Robert Higgins, M. Olson, S. Olson, M. Lodema, Julianne N. Matczyszyn, P. Mullin, L. Sutton, and K.S Powers

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Design of Probabilistic Random Forests with Applications to Anticancer Drug Sensitivity Prediction- 2016, Raziur Rahman, Saad Haider, Souparno Ghosh, and Ranadip Pal

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A Compendium of Chromatin Contact Maps Reveals Spatially Active Regions in the Human Genome, Anthony D. Schmitt, Ming Hu, Inkyung Jung, Zheng Xu, Yunjiang Qiu, Catherine L. Tan, Yun Li, Shin Lin, Yiing Lin, Cathy L. Barr, and Bing Ren

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How Often Are Antibiotic-Resistant Bacteria Said to “Evolve” in the News?, Nina Singh, Matthew T. Sit, Deanna M. Chung, Ana A. Lopez, Ranil Weerackoon, and Pamela J. Yeh

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A BAYESIAN GWAS METHOD UTILIZING HAPLOTYPE CLUSTERS FOR A COMPOSITE BREED POPULATION, Danielle F. Wilson-Wells and Stephen D. Kachman

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Optimal Design of Low-Density SNP Arrays for Genomic Prediction: Algorithm and Applications, Xiao-Lin Wu, Jiaqi Xu, Guofei Feng, George R. Wiggans, Jeremy F. Taylor, Jun He, Changsong Qian, Jiansheng Qiu, Barry Simpson, Jeremy Walker, and Stewart Bauck

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HiView: an integrative genome browser to leverage Hi‑C results for the interpretation of GWAS variants, Zheng Xu, Guosheng Zhang, Qing Duan, Shengjie Chai, Baqun Zhang, Cong Wu, Fulai Jin, Feng Yue, Yun Li, and Ming Hu

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Systematic evaluation of the impact of ChIP-seq read designs on genome coverage, peak identification, and allele-specific binding detection, Qi Zhang, Xin Zeng, Sam Younkin, Trupti Kawli, Michael P. Snyder, and Sündüz Kele

2015

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Measuring Peer Socialization for Adolescent Substance Use:A Comparison of Perceived and Actual Friends’ Substance Use Effects, Arielle R. Deutsch, Pavel Chernyavskiy, Douglas Steinley, and Wendy S. Slutske

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A Copula Based Approach for Design of Multivariate Random Forests for Drug Sensitivity Prediction, Saad Haider, Raziur Rahman, Souparno Ghosh, and Ranadip Pal

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S1: Supplementary Information for Article: A copula based approach for design of multivariate random forests for drug sensitivity prediction, Saad Haider, Raziur Rahman, Souparno Ghosh, and Ranadip Pal

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Effect of dexamethasone prodrug on inflamed temporomandibular joints in juvenile rats, Mitchell Knudsen, Matthew Bury, Callie Holwegner, Adam L. Reinhardt, Fang Yuan, Yijia Zhang, Peter Giannini, D. B. Marx, Dong Wang, and Richard A. Reinhardt

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Establishment and Persistence of Yellow-Flowered Alfalfa No-Till Interseeded into Crested Wheatgrass Stands, Christopher G. Misar, Lan Xu, Roger N. Gates, Arvid Boe, Patricia S. Johnson, Christopher S. Schauer, John R. Rickertsen, and Walter Stroup

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Genomic-Enabled Prediction of Ordinal Data with Bayesian Logistic Ordinal Regression, Osval A. Montesinos-López, Abelardo Montesinos-López, José Crossa, Juan Burgueño, and Kent M. Eskridge

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Threshold Models for Genome-Enabled Prediction of Ordinal Categorical Traits in Plant Breeding, Osval A. Montesinos-López, Abelardo Montesinos-López, Paulino Pérez-Rodríguez, Gustavo de los Campos, Kent M. Eskridge, and José Crossa

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Design of Probabilistic Random Forests with Applications to Anticancer Drug Sensitivity Prediction, Raziur Rahman, Saad Haider, Souparno Gosh, and Ranadip Pal

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VOC emissions from beef feedlot pen surfaces as affected by within-pen location, moisture and temperature, Bryan L. Woodbury, John E. Gilley, David B. Parker, David B. Marx, and Roger A. Eigenberg

2014

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Cytological and Transcriptional Dynamics Analysis of Host Plant Revealed Stage-Specific Biological Processes Related to Compatible Rice-Ustilaginoidea virens Interaction, Jinquan Chao, Jie Jin, Dong Wang, Ran Han, Renshan Zhu, Yingguo Zhu, and Shaoqing Li

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Parametric and Nonparametric Statistical Methods for Genomic Selection of Traits with Additive and Epistatic Genetic Architectures, Reka Howard, Alicia L. Carriquiry, and William D. Beavis

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Identifying Glioblastoma Gene Networks Based on Hypergeometric Test Analysis, Vasileios Stathias, Chiara Pastori, Tess Z. Griffin, Ricardo Komotar, Jennifer L. Clarke, Ming Zhang, and Nagi G. Ayad

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Confidence intervals for ranks of age-adjusted rates across states or counties, Shunpu Zhang, Jun Luo, Li Zhu, David G. Stinchcomb, Dave Campbell, Ginger Carter, Scott Gilkeson, and Eric J. Feuer

2013

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Practical Guidelines for the Comprehensive Analysis of ChIP-seq Data, Timonthy Bailey, Pawel Krajewski, Istvan Ladunga, Celine Lefebvre, Qunhua Li, Tao Liu, Pedro Madrigal, Cenny Taslim, and Jie Zhang

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Prediction in M-complete Problems with Limited Sample Size, Jennifer Lynn Clarke, Bertrand Clarke, and Chi-Wai Yu

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Comparison of molecular breeding values based on within- and across-breed training in beef cattle, Stephen D. Kachman, Matthew L. Spangler, Gary L. Bennett, Kathryn J. Hanford, Larry A. Kuehn, Warren M. Snelling, Mark Thallman, Mahdi Saatchi, Dorian J. Garrick, Robert D. Schnabel, Jeremy F. Taylor, and E John Pollak

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The change in differing leukocyte populations during vaccination to bovine respiratory disease and their correlations with lung scores, health records, and average daily gain, R. J. Leach, C. G. Chitko-McKown, G. L. Bennett, S. A. Jones, Stephen D. Kachman, J. W. Keele, K. A. Leymaster, R. M. Thallman, and L. A. Kuehn

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Drosophila melanogaster Selection for Survival after Infection with Bacillus cereus Spores: Evolutionary Genetic and Phenotypic Investigations of Respiration and Movement, Junjie Ma, Andrew K. Benson, Stephen D. Kachman, Deidra J. Jacobsen, and Lawrence G. Harshman

2012

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Comment on Article by Sancetta, Bertrand Clarke

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Prediction in several conventional contexts, Bertrand Clarke and Jennifer clarke

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Transcriptome-Wide Changes in Chlamydomonas reinhardtii Gene Expression Regulated by Carbon Dioxide and the CO2-Concentrating Mechanism Regulator CIA5/CCM1, Wei Fang, Yaqing Si, Stephen Douglass, David Casero, Sabeeha S. Merchant, Matteo Pellegrini, Istvan Ladunga, Peng Liu, and Martin H. Spalding

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Learning Interdisciplinary Pedagogies, Alison J. Friedow, Erin E. Blankenship, Jennifer L. Green, and Walter Stroup

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Drosophila melanogaster Selection for Survival of Bacillus cereus Infection: Life History Trait Indirect Responses, Junjie Ma, Andrew K. Benson, Stephen D. Kachman, Zhen Hu, and Lawrence G. Harshman

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Murine Gut Microbiota Is Defined by Host Genetics and Modulates Variation of Metabolic Traits, Autumn M. McKnite, Maria Elisa Perez-Munoz, Lu Lu, Evan G. Williams, Simon Brewer, Penelope A. Andreux, John W. M. Bastiaansen, Xusheng Wang, Stephen D. Kachman, Johan Auwerx, Robert W. Williams, Andrew K. Benson, Daniel A. Peterson, and Daniel C. Ciobanu

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Sample Size under Inverse Negative Binomial Group Testing for Accuracy in Parameter Estimation, Osval Antonio Montesinos-López, Abelardo Montesinos-López, Jose Crossa, and Kent M. Eskridge

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Muscle Organization in Individuals with and without Pain and Joint Dysfunction, J. C. Nickel, Y. M. Gonzalez, W. D. McCall, R. Ohrbach, D. B. Marx, H. Liu, and L. R. Iwasaki

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Anticancer Peptidylarginine Deiminase (PAD) Inhibitors Regulate the Autophagy Flux and the Mammalian Target of Rapamycin Complex 1 Activity, Yuji Wang, Pingxin Li, Shu Wang, Jing Hu, Xiangyun Amy Chen, Jianhui Wu, Megan Fisher, Kira Oshaben, Na Zhao, Ying Gu, Dong Wang, Gong Chen, and Yanming Wang

2011

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Effects of Animal Diet, Manure Application Rate, and Tillage on Transport of Microorganisms from Manure-Amended Fields, Lisa M. Durso, John Gilley, David B. Marx, and Bryan Woodbury

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Variation in Sclerotinia sclerotiorum Bean Isolates from Multisite Resistance Screening Locations, Lindsey Otto-Hanson; James R, Steadman; Rebecca Higgins; and Kent M. Eskridge

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Development of an internet based system for modeling biotin metabolism using Bayesian networks, Jinglei Zhou, Dong Wang, Vicki L. Schlegel, and Janos Zempleni

2010

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Weakly Positioned Nucleosomes Enhance the Transcriptional Competency of Chromatin, Yaakov Belch, Jingyi Yang, Yang Liu, Sridhar A. Malkaram, Rong Liu, Jean-Jack M. Riethoven, and Istvan Ladunga

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Desiderata for a Predictive Theory of Statistics, Bertrand Clarke

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Reference priors for exponential families with increasing dimension, Bertrand Clarke and Subhashis Ghosal

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Reference priors for exponential families with increasing dimension, Bertrand S. Clarke and Subhashis Ghosal

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Principal component analysis and biochemical characterization of protein and starch reveal primary targets for improving sorghum grain, Joshua H. Wong, D. B. Marx, Jeff D. Wilson, Bob B. Buchanan, Peggy G. Lemaux, and Jeffrey F. Pedersen

2009

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The EM algorithm for group testing regression models under matrix pooling, Christopher R. Bilder and Boan Zhang

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Pattern Recognition of Longitudinal Trial Data with Nonignorable Missingness: An Empirical Case Study, Julia Hua Fang, Kimberly A. Espy, Maria L. Rizzo, Christian Stopp, Sandra A. Wiebe, and Walter W. Stroup

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Temporomandibular joint loads in subjects with and without disc displacement, Laura R. Iwasaki, Michael J. Crosby, Yoly Gonzalez, Willard D. McCall, David B. Marx, Richard Ohrbach, and Jeffrey C. Nickel

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Temporomandibular joint loads in subjects with and without disc displacement, Laura R. Iwasaki, Michael J. Crosby, Yoly Gonzalez, Willard D. McCall, David B. Marx, Richard Ohrbach, and Jeffrey C. Nickel

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Upstream-Downstream Relationships in Terms of Annual Streamflow Discharges and Drought Events in Nebraska, Hong Wu, Leen-Kiat Soh, Ashok Samal, Tao Hong, David B. Marx, and Xunhong Chen

2008

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A Bayesian test for excess zeros in a zero-inflated power series distribution, Archan Bhattacharya, Bertrand S. Clarke, and Gauri S. Datta

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J. K. Ghosh’s contribution to statistics: A brief outline, Bertrand Clarke and Subhashis Ghosal

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An ensemble approach to improved prediction from multitype data, Jennifer Clarke and

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Evaluation of Serotonin as a Feedback Inhibitor of Lactation in the Bovine, L. L. Hernandez, C. M. Stiening, J. B. Wheelock, L. H. Baumgard, Anne M. Parkhurst, and R. J. Collier

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An Improved String Composition Method for Sequence Comparison, Guoqing Lu, Shunpu Zhang, and Xiang Fang

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An Improved String Composition Method for Sequence Comparison, Guoqing Lu, Shunpu Zhang, and Xiang Fang

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Computation of a Face Attractiveness Index Based on Neoclassical Canons, Symmetry, and Golden Ratios, Kendra Schmid, David Marx, and Ashok Samal

2007

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Changing the Support of a Spatial Covariate: A Simulation Study, Tisha L. Hooks, Jeffrey F. Pedersen, David B. Marx, and Roch E. Gaussoin

2006

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CLOSED FORM EXPRESSIONS FOR BAYESIAN SAMPLE SIZE, Bertrand S. Clarke and A. Yuan

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Variation in the U.S. Photoperiod Insensitive Sorghum Collection for Chemical and Nutritional Traits, Tisha L. Hooks, Jeffrey F. Pedersen, D. B. Marx, and K. P. Vogel

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Trans-10, cis-12 conjugated linoleic acid causes inflammation and delipidation of white adipose tissue in mice: a microarray and histological analysis, P. Christopher LaRosa, Jess L. Miner, Yuannan Xia, You Zhou, Stephen D. Kachman, and Michael Fromm

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Pregnancy rate and first-service conception rate in Angus heifers, J. Minick Bormann, L. R. Totir, Stephen D. Kachman, R. L. Fernando, and D. E. Wilson

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QUOTIENT OF LAPLACE AND GUMBEL RANDOM VARIABLES, Saralees Nadarajah

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Comments on “On the Distribution of the Product of Independent Rayleigh Random Variables”, Saralees Nadarajah and Samuel Kotz

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Comments on “On the Distribution of the Product of Independent Rayleigh Random Variables”, Saralees Nadarajah and Samuel Kotz

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On the η - κ Distribution, Saralees Nadarajah and Samuel Kotz

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On the η – κ Distribution, Saralees Nadarajah and Samuel Kotz

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RELIABILITY FOR SOME BIVARIATE EXPONENTIAL DISTRIBUTIONS, Saralees Nadarajah and Samuel Kotz

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The Exact Distribution of the Multilook Magnitude, Saralees Nadarajah and Samuel Kotz

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Computation of a face attractiveness index based on neoclassical canons, symmetry, and golden ratios, Kendra Schmid, David Marx, and Ashok Samal

2005

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Effects of supplementation of whole corn germ on reproductive performance, calf performance, and leptin concentration in primiparous and mature beef cows, J. L. Martin, Richard J. Rasby, Dennis R. Brink, R. U. Lindquist, D. H. Keisler, and Stephen D. Kachman

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ON THE PRODUCT AND RATIO OF LAPLACE AND BESSEL RANDOM VARIABLES, Saralees Nadarajah

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RELIABILITY FOR SOME BIVARIATE GAMMA DISTRIBUTIONS, Saralees Nadarajah