Date of this Version
Yali Wang, The intersection of nuclear magnetic resonance, dissertation, 2015
Nuclear Magnetic resonance and quantum chemistry have been recognized to be strong tools for probing the structure and dynamics of molecules to further solve chemistry and biological problems. Chemical shift measured by NMR experiment and chemical shielding, molecular energy and molecular structure calculated by quantum chemistry provide extensive information.
Exact analytic gradients, are obtained for cavitation, dispersion and repulsion energies and time-dependent density functional theory for the continuum solvation model, which could be used to probe the structure, dynamics and properties of molecules. Copper in CuA azurin is recognized to be coordinated by a structure water molecule by comparing the experimental His120 pKa reported in literature with quantum mechanical calculation result.
Accurate 13C NMR chemical shielding for small organic molecules can be obtained by quantum mechanical calculation by considering electron correlation effect, complete basis set extrapolation and vibrational correction. Basis set incompleteness is found to be the main source of inaccuracy and cannot be removed by applying any fixed correction, but is dependent on the chemical nature of the relevant group. The 13C chemical shielding of methyl, ethylene and ethyne carbon is significantly improved by vibrational correction.
Trifluroacetic acid catalyzed retinoic acid isomerization is recognized to simultaneously decay to polymer by using 1H NMR method. Common intermediate occurs for the isomeration and all-trans, 9-cis and 9,13-dicis retinoic acid all first convert to 13-cis retinoic acid. Free energy changes obtained by NMR experiment compare well with the calculated result using quantum mechanical method done by Professor Harbison.
Solid-State CPMAS NMR method shows that DL-aspartic acid crystalizes to racemic crystals rather than conglomerate over most of its temperature range, which is confirmed by PXRD. In contrast, glutamic acid crystalizes as a conglomerate under normal circumstances.
Adviser: Gerard S. Harbison