Electrical and Computer Engineering, Department of

 

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Document Type

Article

Date of this Version

2003

Citation

Pub. No.: US 2003/0224384 A1

Pub. Date: Dec. 4, 2003

Comments

Sayood et al.

US 2003/0224384 A1

Abstract

The present invention provides a new algorithm for assembling fragments from a long DNA sequence. The algorithm of the invention Solves simultaneously fragment assembly-related problems. Such as the fragment orientation, overlap and layout phases. This is achieved by clustering fragments with respect to their Average Mutual Information (AMI) profiles using the k-means algorithm.

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