Natural Resources, School of
Combining UAV-RGB high-throughput field phenotyping and genome-wide association study to reveal genetic variation of rice germplasms in dynamic response to drought stress
Zhao Jiang https://orcid.org/0000-0001-8686-2784
Haifu Tu https://orcid.org/0000-0003-4051-7605
Baowei Bai https://orcid.org/0000-0002-7032-9018
Chenghai Yang https://orcid.org/0000-0002-9898-628X
Biquan Zhao https://orcid.org/0000-0002-9710-744X
Ziyue Guo https://orcid.org/0000-0003-3368-1482
Qian Liu https://orcid.org/0000-0003-1137-0026
Hu Zhao https://orcid.org/0000-0001-5046-6632
Wanneng Yang https://orcid.org/0000-0003-1095-1355
Lizhong Xiong https://orcid.org/0000-0003-0490-1474
Jian Zhang https://orcid.org/0000-0003-3364-1544
Date of this Version
New Phytologist (2021)
Accurate and high-throughput phenotyping of the dynamic response of a large rice population to drought stress in the field is a bottleneck for genetic dissection and breeding of drought resistance.
Here, high-efficiency and high-frequent image acquisition by an unmanned aerial vehicle (UAV) was utilized to quantify the dynamic drought response of a rice population under field conditions. Deep convolutional neural networks (DCNNs) and canopy height models were applied to extract highly correlated phenotypic traits including UAV-based leaf-rolling score (LRS_uav), plant water content (PWC_uav) and a new composite trait, drought resistance index by UAV (DRI_uav).
The DCNNs achieved high accuracy (correlation coefficient R = 0.84 for modeling set and R = 0.86 for test set) to replace manual leaf-rolling rating. PWC_uav values were precisely estimated (correlation coefficient R = 0.88) and DRI_uav was modeled to monitor the drought resistance of rice accessions dynamically and comprehensively. A total of 111 significantly associated loci were detected by genome-wide association study for the three dynamic traits, and 30.6% of them were not detected in previous mapping studies using nondynamic drought response traits.
Unmanned aerial vehicle and deep learning are confirmed effective phenotyping techniques for more complete genetic dissection of rice dynamic responses to drought and exploration of valuable alleles for drought resistance improvement.
Figs S1-S4, Notes S1-S6
Jiang NP 2021 Combining UAV-RGB--SUPP2.xlsx (426 kB)
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