2013
Parasitoid Infestation Changes Female Mating Preferences, Oliver M. Beckers and William E. Wagner
2012
Eavesdropping Parasitoids Do Not Cause the Evolution of Less Conspicuous Signaling Behavior in a Field Cricket, Oliver M. Beckers and William E. Wagner
Draft Genome Sequence of the Anaerobic, Nitrate-Dependent, Fe(II)-Oxidizing Bacterium Pseudogulbenkiania ferrooxidans Strain 2002, Kathryne G. Byrne-Bailey, Karrie A. Weber, and John D. Coates
L1pred: A Sequence-Based Prediction Tool for Catalytic Residues in Enzymes with the L1-logreg Classifier, Yongchao Dou, Jun Wang, Jialiang Yang, and Chi Zhang
DFVF: database of fungal virulence factors, Tao Lu, Bo Yao, and Chi Zhang
Comparative Transitive and Temporal Orderliness in Dominance Networks, David McDonald and Daizaburo Shizuka
Reducing odorous VOC emissions from swine manure using soybean peroxidase and peroxides, David B. Parker, Lingshuang Cai, Ki-Hyun Kim, Kristin E. Hales, Mindy J. Spiehs, Bryan L. Woodbury, Audrey L. Atkin, Kenneth Nickerson, and Krista D. Patefield
Influence of aphid honeydew on the foraging behavior of Hippodamia convergens larvae, Swapna R. Purandare and Brigitte Tenhumberg
Covariation between understorey light environments and soil resources in Bornean mixed dipterocarp rain forest, Sabrina E. Russo, Lin Zhang, and Sylvester Tan
Family Dynamics Through Time: Brood Reduction Followed by Parental Compensation with Aggression and Favoritism, Daizaburo Shizuka and Bruce E. Lyon
A Social Network Perspective on Measurements of Dominance Hierarchies, Daizaburo Shizuka and David B. McDonald
Tradeoffs limit the evolution of male traits that are attractive to females, William E. Wagner, Oliver M. Beckers, Amanda E. Tolle, and Alexandra Basolo
Concatenation and Concordance in the Reconstruction of Mouse Lemur Phylogeny: An Empirical Demonstration of the Effect of Allele Sampling in Phylogenetics, David W. Weisrock, Stacey DeWitt Smith, Lauren M. Chan, Karla Biebouw, Peter M. Kappeler, and Anne D. Yoder
2011
SuiteMSA: visual tools for multiple sequence alignment comparison and molecular sequence simulation, Catherine L. Anderson, Cory L. Strope, and Etsuko N. Moriyama
Use of Nape Tags for Marking Offspring of Precocial Waterbirds, Todd W. Arnold, Daizaburo Shizuka, Bruce E. Lyon, Jeffrey T. Pelayo, Katherine R. Mehl, Joshua J. Traylor, Wendy L. Reed, and Courtney L. Amundson
Survival Rates of Planidial Larvae of the Parasitoid Fly Ormia ochracea (Diptera: Tachinidae), Oliver M. Beckers, Cassandra M. Martin, and William E. Wagner Jr.
Male Field Crickets Infested by Parasitoid Flies Express Phenotypes that May Benefit the Parasitoids, Oliver M. Beckers and William E. Wagner
Variations on a theme: diversification of cuticular hydrocarbons in a clade of cactophilic Drosophila, Cássia C. de Oliveira, Maura H. Manfrin, Fábio de M Sene, Larry L. Jackson, and William J. Etges
The Effects of Belowground Resources on Aboveground Allometric Growth in Bornean Tree Species, Katherine D. Heineman, Ethan Jensen, Autumn Shapland, Brett Bogenrief, Sylvester Tan, Richard Rebarber, and Sabrina E. Russo
Increased transsulfuration mediates longevity and dietary restriction in Drosophila, Hadise Kabil, Omer Kabil, Ruma Banerjee, Lawrence G. Harshman, and Scott D. Pletcher
Population Dynamics of the Western Prickly Pear, Opuntia macrorhiza (Cactaceae), Kathleen H. Keeler and Brigitte Tenhumberg
Phylogenetic diversity of Fe(III)-reducing microorganisms in rice paddy soil: Enrichment cultures with different short-chain fatty acids as electron donors, Huijuan Li, Jingjing Peng, Karrie A. Weber, and Yongguan Zhu
Morphologic Clues to the Origins of Iron Oxide–Cemented Spheroids, Boxworks, and Pipelike Concretions, Navajo Sandstone of South-Central Utah, U.S.A., David B. Loope, Richard M. Kettler, and Karrie A. Weber
Priority resource access mediates competitive intensity between an invasive weevil and native floral herbivores, Svata M. Louda, Tatyana A. Rand, A. A. R. Kula, A. E. Arnett, N. M. West, and Brigitte Tenhumberg
Comparative genomics of proteins involved in RNA nucleocytoplasmic export, Mariana Serpeloni, Newton M. Vidal, Samuel Goldenberg, Andréa R. Ávila, and Federico G. Hoffmann
Hosts Improve the Reliability of Chick Recognition by Delaying the Hatching of Brood Parasitic Eggs, Daizaburo Shizuka and Bruce E. Lyon
Molecular evolution of urea amidolyase and urea carboxylase in fungi, Pooja K. Strope, Kenneth W. Nickerson, Steven D. Harris, and Etsuko N. Moriyama
Humic Acid-Oxidizing, Nitrate-Reducing Bacteria in Agricultural Soils, J. Ian Van Trump, Kelly C. Wrighton, J. Cameron Thrash, Karrie A. Weber, Gary L. Andersen, and John D. Coates
Environmental and Taxonomic Bacterial Diversity of Anaerobic Uranium(IV) Bio-Oxidation, Karrie A. Weber, J. Cameron Thrash, J. Ian Van Trump, Laurie A. Achenbach, and John D. Coates
2010
Cognitive Representation in Transitive Inference: A Comparison of Four Corvid Species, Alan B. Bond, Cynthia A. Wei, and Alan C. Kamil
Structured Population Dynamics: An Introduction to Integral Modeling, Joseph Briggs, Kathryn Dabbs, Michael Holm, Joan Lubben, Richard Rebarber, Brigitte Tenhumberg, and Daniel Riser-Espinoza
Genome Sequence of the Pea Aphid Acyrthosiphon pisum, Jennifer A. Brisson, Stephen Richards, and International Aphid Genomics Consortium
Completed Genome Sequence of the Anaerobic Iron-Oxidizing Bacterium Acidovorax ebreus Strain TPSY, Kathryne G. Byrne-Bailey, Karrie A. Weber, Antinea H. Chair, Saumyaditya Bose, Traci Knox, Trisha L. Spanbauer, Olga Chertkov, and John D. Coates
The Capsid Protein of Turnip Crinkle Virus Overcomes Two Separate Defense Barriers to Facilitate Systemic Movement of the Virus in Arabidopsis, Mingxia Cao, Xiaohong Yi, Kristen Willie, Junyan Lin, Xiuchun Zhang, Margaret G. Redinbaugh, Anne E. Simon, Thomas Jack Morris, and Feng Qu
Glycopeptidome of a Heavily N-Glycosylated Cell Surface Glycoprotein of Dictyostelium Implicated in Cell Adhesion, Christa L. Feasley, Jennifer M. Johnson, Christopher M. West, and Catherine P. Chia
Effects of Plant Sex on Range Distributions and Allocation to Reproduction, Marc T.J. Johnson, Stacey DeWitt Smith, and Mark D. Rausher
Activity and Toxicity of Farnesol towards Candida albicans Are Dependent on Growth Conditions, Melanie L. Langford, Sahar Hasim, Kenneth W. Nickerson, and Audrey L. Atkin
MEePthSodVolRog ya anrticdle EPMeta: prediction of antigenic epitopes using support vector regression and multiple server results, Shide Liang, Dandan Zheng, Daron M. Standley, Bo Yao, Martin Zacharias, and Chi Zhang
Agmatidine, a modified cytidine in the anticodon of archaeal tRNAIle, base pairs with adenosine but not with guanosine, Debabrata Mandal, Caroline Köhrer, Dan Su, Susan P. Russell, Kady Krivos, Colette M. Castleberry, Paul H. Blum, Patrick A. Limbach, Dieter Söll, and Uttam L. RajBhandary
Female Field Crickets Incur Increased Parasitism Risk When Near Preferred Song, Cassandra M. Martin and William E. Wagner Jr.
Contributions of demography and dispersal parameters to the spatial spread of a stage-structured insect invasion, Tom E. X. Miller and Brigitte Tenhumberg
Phosphatidylinositol 5-Phosphate Links Dehydration Stress to the Activity of Arabidopsis Trithorax-Like Factor ATX1, Ivan Ndamukong, David R. Jones, Hanna Lapko, Nullin Divecha, and Zoya V. Avramova
Evolution of the Kdo2-lipid A Biosynthesis in Bacteria, Stephen O. Opiyo, Rosevelt L. Pardy, Hideaki Moriyama, and Etsuko Moriyama
Viral trans-Factor Independent Replication of Human Papillomavirus Genomes, Daraporn Pittayakhajonwut and Peter C. Angeletti
Variation in Leaf Stomatal Traits of 28 Tree Species in Relation to Gas Exchange along an Edaphic Gradient in a Bornean Rain Forest, Sabrina E. Russo, Whitney Logan Cannon, Christian Gary Elowsky, Sylvester Tan, and Stuart J. Davies
Interspecific Relationships among Growth, Mortality and Xylem Traits of Woody Species from New Zealand, Sabrina E. Russo, Kerry L. Jenkins, Susan K. Wiser, Maria Uriarte, Richard P. Duncan, and David A. Coomes
Isolation and Characterization of Bacteria Resistant to Metallic Copper Surfaces, Christophe Espírito Santo, Paula Vasconcelos Morais, and Gregor Grass
The Effects of Flower Color Transitions on Diversification Rates in Morning Glories (Ipomoea subg. Quamoclit, Convolvulaceae), Stacey DeWitt Smith, Richard E. Miller, Sarah P. Otto, Richard G. FitzJohn, and Mark D. Rausher
Ignoring Population Structure Can Lead to Erroneous Predictions of Future Population Size, Brigitte Tenhumberg
Dynamic Changes in Genome-Wide Histone H3 Changes Lysine 4 Methylation Patterns in Response to Dehydration Stress in Arabidopsis thaliana, Karen van Dijk, Yong Ding, Sridar Achary Malkaram, Jean-Jack M. Riethoven, Rong Liu, Jingyi Yang, Peter Laczko, Han Chen, Yuannan Xia, Istvan Ladunga, Zoya V. Avramova, and Michael E. Fromm
Differences in HIV Burden and Immune Activation within the Gut of HIV-Positive Patients Receiving Suppressive Antiretroviral Therapy, Steven A. Yukl, Sara Gianella, Elizabeth Sinclair, Lorrie Epling, Qingsheng Li, Lijie Duan, Alex L.M. Choi, Valerie Girling, Terence Ho, Peilin Li, Katsuya Fujimoto, Harry Lampiris, C. Bradley Hare, Mark Pandori, Ashley T. Haase, Huldrych F. Günthard, Marek Fischer, Amandeep K. Shergill, Kenneth McQuaid, Diane V. Havlir, and Joseph K. Wong
Microevolution of intermediary metabolism: evolutionary genetics meets metabolic biochemistry, Anthony J. Zera
Dual Functions of Interferon Regulatory Factors 7C in Epstein-Barr Virus–Mediated Transformation of Human B Lymphocytes, Yong Zhao, Dongsheng Xu, Yanjun Jiang, and Luwen Zhang
2009
Similar Patterns of Linkage Disequilibrium and Nucleotide Diversity in Native and Introduced Populations of the Pea Aphid, Acyrthosiphon pisum, Jennifer A. Brisson, Sergey V. Nuzhdin, and David L. Stern
Arginine-Induced Germ Tube Formation in Candida albicans Is Essential for Escape from Murine Macrophage Line RAW 264.7, Suman Ghosh, Dhammika H. M. L. P. Navarathna, David D. Roberts, Jake T. Cooper, Audrey L. Atkin, Thomas M. Petro, and Kenneth Nickerson
Plant Sex and the Evolution of Plant Defenses against Herbivores, Marc T.J. Johnson, Stacey DeWitt Smith, Marc D. Rausher, and Douglas J. Futuyma
Species-driven changes in nitrogen cycling can provide a mechanism for plant invasions, Johannes M. H. Knops and Ramesh Laungani
Natural History Note No Trade-Off between Seed Size and Number in the Valley Oak Quercus lobata, Walter D. Koenig, Johannes M. N. Knops, William J. Carmen, and Richard D. Sage
Parameterizing the growth-decline boundary for uncertain population projection models, Joan Lubben, Derek Boeckner, Richard Rebarber, Stuart Townley, and Brigitte Tenhumberg
Impacts of insect herbivory on cactus population dynamics: experimental demography across an environmental gradient, Tom E. X. Miller, Svata M. Louda, Karen A. Rose, and James O. Eckberg
Natural Genetic Variation in Transcriptome Reflects Network Structure Inferred with Major Effect Mutations: Insulin/TOR and Associated Phenotypes in Drosophila melanogaster, Sergey Nuzhdin, Jennifer A. Brisson, Andrew Pickering, Marta Wayne, Lawrence G. Harshman, and Lauren McIntyre
Natural Genetic Variation in Transcriptome Reflects Network Structure Inferred with Major Effect Mutations: Insulin/TOR and Associated Phenotypes in Drosophila melanogaster, Sergey V. Nuzhdin, Jennifer A. Brisson, Andrew Pickering, Marta L. Wayne, Lawrence G. Harshman, and Lauren M. McIntyre
Transcriptional Profiling of the Sperm Storage Organs of Drosophila melanogaster, Adrianne M. Prokupek, Stephen D. Kachman, Istvan Ladunga, and Lawrence G. Harshman
Macroevolutionary Tests of Pollination Syndromes: A Reply to Fenster et al., Stacey DeWitt Smith, Cécile Ané, and David A. Baum
Computational Prediction of Novel Non-Coding RNAs in Arabidopsis thaliana, Dandan Song, Yang Yang, Bin Yu, Binglian Zheng, Zhidong Deng, Bao-Liang Lu, Xuemei Chen, and Tao Jiang
Gene Duplication and the Resolution of Adaptive Conflict, Jay F. Storz
Evolutionary and functional insights into the mechanism underlying high-altitude adaptation of deer mouse hemoglobin, Jay F. Storz, Amy M. Runck, Stephen J. Sabatino, John K. Kelly, Nuno Ferrand, Hideaki Moriyama, Roy E. Weber, and Angela Fago
Behavioral response of dissimilatory perchlorate-reducing bacteria to different electron acceptors, Yvonne Sun, Ruth L. Gustavson, Nadia Ali, Karrie A. Weber, Lacey L. Westphal, and John D. Coates
Occurrence of Trichosirocalus horridus (Coleoptera: Curculionidae) on Native Cirsium altissimum Versus Exotic C. vulgare in North American Tallgrass Prairie, Masaru Takahashi, Svata M. Louda, Tom E. X. Miller, and Charles W. O'Brien
Model complexity affects transient population dynamics following a dispersal event: A case study with pea aphids, Brigitte Tenhumberg, Andrew J. Tyre, and Richard Rebarber
Physiological and taxonomic description of the novel autotrophic, metal oxidizing bacterium, Pseudogulbenkiania sp. strain 2002, Karrie A. Weber, David B. Hedrick, Aaron D. Peacock, J. Cameron Thrash, David C. White, Laurie A. Achenbach, and John D. Coates
2008
Tissue and stage-specific juvenile hormone esterase (JHE) and epoxide hydrolase (JHEH) enzyme activities and Jhe transcript abundance in lines of the cricket Gryllus assimilis artificially selected for plasma JHE activity: Implications for JHE microevolution, Anurag Anand, Erica Crone, and Anthony J. Zera
Vulnerability of Rehabilitated Agricultural Production Systems to Invasion by Nontarget Plant Species, Sara G. Baer, David M. Engle, Johannes M. N. Knops, Kenneth A. Langeland, Bruce D. Maxwell, Fabian D. Menalled, and Amy J. Symstad
Review of Archaea: Molecular and Cellular Biology, Paul Blum
Pea Aphid, Jennifer A. Brisson and Gregory K. Davis
Rarity of Males in Pea Aphids Results in Mutational Decay, Jennifer A. Brisson and Sergey V. Nuzhdin
Evidence for contrasting modes of selection at interacting globin genes in the European rabbit (Oryctolagus cuniculus), R. Campos, Jay F. Storz, and N. Ferrand
NUCLEIC ACID SEQUENCES FOUND IN DROSOPHILA MELANOGASTER THAT ENCODE PROTEINS ESSENTIAL FOR VIABILITY AND METHOD OF USE: U.S. Patent No. US 7,384,745 B2, Alan C. Christensen and Douglas R. Dorer
Parasite-Mediated Disruptive Selection in a Natural Daphnia Population, Meghan Duffey, Chad Brassil, Spencer Hall, Alan Tessier, Carla Cáceres, and Jeffrey Conner
Molecular evolution of cytochrome b in high- and low-altitude deer mice (genus Peromyscus), E.J. Gering, J. C. Opazo, and Jay F. Storz
Regulation of Aromatic Alcohol Production in Candida albicans, Suman Ghosh, Bessie W. Kebaara, Audrey L. Atkin, and Kenneth W. Nickerson
Substrate-dependent signaling success in the wolf spider, Schizocosa retrorsa, Eileen Hebets, Damian O. Elias, Andrew C. Mason, Gary L. Miller, and Gail E. Stratton
Diet influences mate choice selectivity in adult female wolf spiders, Eileen Hebets, Jennifer Wesson, and Paul S. Shamble
Genetic Variation in Mother-Child Acute Seroconverter Pairs from Zambia, Federico G. Hoffmann, Xiang He, John T. West, Philippe Lemey, Chipepo Kankasa, and Charles Wood
Rapid Rates of Lineage-Specific Gene Duplication and Deletion in the α-Globin Gene Family, Federico G. Hoffmann, Juan C. Opazo, and Jay F. Storz
New Genes Originated via Multiple Recombinational Pathways in the β-Globin Gene Family of Rodents, Frederico Hoffmann, Juan Opazo, and Jay F. Storz
Environmental Effects on the Expression of Life Span and Aging: An Extreme Contrast between Wild and Captive Cohorts of Telostylinus angusticollis (Diptera: Neriidae), Noriyoshi Kawasaki, Chad Brassil, Robert Brooks, and Russell Bonduriansky
Optimal Data Partitioning and a Test Case for Ray-Finned Fishes (Actinopterygii) Based on Ten Nuclear Loci, Chenhong Li, Guoqing Lu, and Guillermo Ortí
Management Recommendations Based on Matrix Projection Models: The Importance of Considering Biological Limits, Joan Lubben, Brigitte Tenhumberg, Andrew J. Tyre, and Richard Rebarber
Herbivore-Mediated Ecological Costs of Reproduction Shape the Life History of an Iteroparous Plant, Tom E. X. Miller, Brigitte Tenhumberg, and Svata M. Louda
Genomic evidence for independent origins of β-like globin genes in monotremes and therian mammals, Juan C. Opazo, Federico G. Hoffmann, and Jay F. Storz
Differential loss of embryonic globin genes during the radiation of placental mammals, Juan C. Opazo, Federico Hoffmann, and Jay F. Storz
A 15-Myr-Old Genetic Bottleneck, Timothy Paape, Boris Igic, Stacey DeWitt Smith, Richard Olmstead, Lynn Bohs, and Joshua R. Kohn
An Evolutionary Expressed Sequence Tag Analysis of Drosophila Spermatheca Genes, Adrianne Prokupek, Federico G. Hoffmann, Seong-il Eyun, Etsuko Moriyama, Min Zhou, and Lawrence G. Harshman
Arabidopsis DRB4, AGO1, AGO7, and RDR6 participate in a DCL4-initiated antiviral RNA silencing pathway negatively regulated by DCL1, Feng Qu, Xiaohong Ye, and T. Jack Morris
Interspecific Demographic Trade-Offs and Soil-Related Habitat Associations of Tree Species along Resource Gradients, Sabrina E. Russo, Patrick Brown, Sylvester Tan, and Stuart J. Davies
Corrigendum (Russo et al. 2007): A Re-Analysis of Growth–Size Scaling Relationships of Woody Plant Species, Sabrina E. Russo, Susan K. Wiser, and David A. Coomes
Agonistic signals received by an arthropod filiform hair allude to the prevalence of near-field sound communication, Roger D. Santer and Eileen Hebets
Supplementary Material: Agonistic signals received by an arthropod filiform hair allude to the prevalence of near-field sound communication, Roger D. Santer and Eileen Hebets
The Role of Pollinator Shifts in the Floral Diversification of Iochroma (Solanaceae), Stacey DeWitt Smith, Cécile Ané, and David A. Baum