Follow


2016

PDF

The Differentiation and Protective Function of Cytolytic CD4 T Cells in influenza infection, Deborah M. Brown, Anna T. Lampe, and Aspen M. Workman

PDF

Molecular Evolution and Functional Divergence of Trace Amine–Associated Receptors, Seong-il Eyun, Hideaki Moriyama, Federico G. Hoffmann, and Etsuko Moriyama

PDF

Tiger salamanders disappearing in region, Dennis M. Ferraro

PDF

Molecular mechanism of the priming by jasmonic acid of specific dehydration stress response genes in Arabidopsis, Ning Liu and Zoya Avramova

PDF

Nested species- rich networks of scavenging vertebrates support high levels of interspecific competition, ESTHER SEBASTIÁN-GONZÁLEZ, MARCOS MOLEÓN, JEAN P. GIBERT, FRANCISCO BOTELLA, PATRICIA MATEO-TOMÁS, PEDRO P. OLEA, PAULO R. GUIMARÃES JR., and JOSÉ A. SÁNCHEZ-ZAPATA

PDF

Measuring the robustness of network community structure using assortativity, Daizaburo Shizuka and Damien R. Farine

2015

PDF

Complete Genome Sequences of Evolved Arsenate-Resistant Metallosphaera sedula Strains, Chenbing Ai, Samuel McCarthy, Wendy Schackwitz, Joel Martin, Anna Lipzen, and Paul Blum

PDF

Generation of an Attenuated, Cross-Protective Pepino mosaic virus Variant Through Alignment-Guided Mutagenesis of the Viral Capsid Protein, Godwill M. Chewachong, Sally A. Miller, Joshua J. Blakeslee, David M. Francis, T. Jack Morris, and Feng Qu

PDF

Nutritional physiology of life-history trade-offs: How food protein–carbohydrate content influences life-history traits in the wing-polymorphic cricket Gryllus firmus, Rebecca M. Clark, Anthony J. Zera, and Spencer T. Behmer

PDF

How fast is fast? Eco-evolutionary dynamics and rates of change in populations and phenotypes, John DeLong, Valery E. Forbes, Nika Galic, Jean P. Gibert, Robert G. Laport, Joseph S. Phillips, and Janna M. Vavra

PDF

Gillespie eco-evolutionary models (GEMs) reveal the role of heritable trait variation in eco-evolutionary dynamics, John DeLong and Jean P. Gibert

PDF

Socio-Economic Instability and the Scaling of Energy Use with Population Size, John P. DeLong and Oskar Burger

PDF

Variation in the local population dynamics of the short-lived Opuntia macrorhiza (Cactaceae), C. V. Haridas, Kathleen H. Keeler, and Brigitte Tenhumberg

PDF

Structural insights into the mechanism defining substrate affinity in Arabidopsis thaliana dUTPase: the role of tryptophan 93 in ligand orientation, Noriko Inoguchi, Kittichai Chaiseeda, Mamoru Yamanishi, Moon Ki Kim, Yunho Jang, Mamta Bajaj, Catherine P. Chia, Donald F. Becker, and Hideaki Moriyama

PDF

Genetically based low oxygen affinities of felid hemoglobins: Lack of biochemical adaptation to high-altitude hypoxia in the snow leopard, Jan E. Janecka, Simone S. E. Nielsen, Sidsel D. Andersen, Federico G. Hoffmann, Roy E. Weber, Trevor Anderson, Jay F. Storz, and Angela Fago

PDF

What drives masting? The phenological synchrony hypothesis, Walter D. Koenig, Johannes M. N. Knops, William J. Carmen, and Ian S. Pearse

PDF

Interspecific egg rejection as ecological collateral damage from selection driven by conspecific brood parasitism, Bruce E. Lyon, Daizaburo Shizuka, and John M. Eadie

PDF

Revisiting operons: an analysis of the landscape of transcriptional units in E. coli, Xizeng Mao, Qin Ma, Bingqiang Liu, Xin Chen, Hanyuan Zhang, and Ying Xu

PDF

Convergent Evolution of Hemoglobin Function in High-Altitude Andean Waterfowl Involves Limited Parallelism at the Molecular Sequence Level, Chandrasekhar Natarajan, Joana Projecto-Garcia, Hideaki Moriyama, Roy E. Weber, Violeta Muñoz-Fuentes, Andy J. Green, Cecilia Kopuchian, Pablo L. Tubaro, Luis Alza, Mariana Bulgarella, Matthew M. Smith, Robert E. Wilson, Angela Fago, Kevin G. McCracken, and Jay F. Storz

PDF

Pollen limitation and flower abortion in a wind-pollinated, masting tree, Ian S. Pearse, Walter D. Koenig, Kyle A. Funk, and Mario B. Pesendorfer

PDF

Genetic Diversity in Oxytocin Ligands and Receptors in New World Monkeys, Dongren Ren, Guoqing Lu, Hideaki Moriyama, Aaryn C. Mustoe, Emily B. Harrison, and Jeffery A. French

PDF

The network motif architecture of dominance hierarchies, Daizaburo Shizuka and David B. McDonald

PDF

Transgenic Virus Resistance in Crop-Wild Cucurbita pepo Does Not Prevent Vertical Transmission of Zucchini yellow mosaic virus, H. E. Simmons, H. R. Prendeville, J. P. Dunham, M. J. Ferrari, J. D. Earnest, D. Pilson, G. P. Munkvold, E. C. Holmes, and A. G. Stephenson

PDF

Oxygenation properties and isoform diversity of snake hemoglobins, Jay F. Storz, Chandrasekhar Natarajan, Hideaki Moriyama, Federico G. Hoffmann, Tobias Wang, Angela Fago, Hans Malte, Johannes Overgaard, and Roy E. Weber

PDF

Integral projection models show exotic thistle is more limited than native thistle by ambient competition and herbivory, Brigitte Tenhumberg, Tomomi Suwa, Andrew J. Tyre, F. Leland Russell, and Svata M. Louda

PDF

Females sample more males at high nesting densities, but ultimately obtain less attractive mates, Robin M. Tinghitella, Chelsea Stehle, and Janette W. Boughman

PDF

Distinct and Cooperative Activities of HESO1 and URT1 Nucleotidyl Transferases in MicroRNA Turnover in Arabidopsis, Bin Tu, Li Liu, Chi Xu, Jixinan Zhai, Shengben Li, Miguel A. Lopez, Yuanyuan Zhao, Yu Yu, Vanitharani Ramachandran, Guodong Ren, Bin Yu, Shigui Li, Blake C. Meyers, Beixin Mo, and Xuemei Chen

PDF

Synergistic and Independent Actions of Multiple Terminal Nucleotidyl Transferases in the 3’ Tailing of Small RNAs in Arabidopsis, Xiaoyan Wang, Shuxin Zhang, Yongchao Dou, Chi Zhang, Xuemei Chen, Bin Yu, and Guodong Ren

PDF

Terrestrial orchids in a tropical forest: best sites for abundance differ from those for reproduction, Melissa Whitman and James D. Ackerman

PDF

Site-Specific Differences in T Cell Frequencies and Phenotypes in the Blood and Gut of HIVUninfected and ART-Treated HIV+ Adults, Steven A. Yukl, Amandeep K. Shergill, Valerie Girling, Qingsheng Li, Maudi Killian, Lorrie Epling, Peilin Li, Philipp Kaiser, Ashley Haase, Diane V. Havlir, Kenneth McQuaid, Elizabeth Sinclair, and Joseph K. Wong

2014

PDF

Using an Ecosystem Approach to complement protection schemes based on organism-level endpoints, Clare Bradshaw, Lawrence Kapustka, Lawrence Barenthouse, Justin Brown, Philippe Ciffroy, Valery E. Forbes, Stanislav Geras'kin, Ulrik Kautsky, and Francois Brechignac

PDF

Genes and Junk in Plant Mitochondria—Repair Mechanisms and Selection, Alan C. Christensen

PDF

The body-size dependence of mutual interference, John P. DeLong

PDF

Dehydration stress memory genes of Zea mays; comparison with Arabidopsis thaliana, Yong Ding, Laetitia Virlouvet, Ning Liu, Jean-Jack Riethoven, Michael Fromm, and Zoya Avramova

PDF

Molecular Evolution of Glycoside Hydrolase Genes in the Western Corn Rootworm (Diabrotica virgifera virgifera), Seong-il Eyun, Haichuan Wang, Yannick Pauchet, Richard H. ffrench-Constant, Andrew K. Benson, Arnubio Valencia-Jimenez, Etsuko Moriyama, and Blair Siegfried

PDF

Temperature alters food web body-size structure, Jean P. Gibert and John P. DeLong

PDF

Spatiotemporal variation in flow-dependent recruitment of long-lived riverine fish: Model development and evaluation, Daisuke Goto, Martin J. Hamel, Jeremy J. Hammen, Mathew L. Rugg, Mark A. Pegg, and Valery E. Forbes

PDF

Variation in the local population dynamics of the short-lived Opuntia macrorhiza (Cactaceae), Chirakkal V. Haridas, Kathleen Keeler, and Brigitte Tenhumberg

PDF

Eutrophication weakens stabilizing effects of diversity in natural grasslands, Yann Hautier, Eric W. Seabloom, Elizabeth T. Borer, Peter B. Adler, W. Stanley Harpole, Helmut Hillebrand, Eric M. Lind, Andrew S. MacDougall, Carly J. Stevens, Jonathan D. Bakker, Yvonne M. Buckley, Chengjin Chu, Scott L. Collins, Pedro Daleo, Ellen I. Damschen, Kendi F. Davies, Philip A. Fay, Jennifer Firn, Daniel S. Gruner, Virginia L. Jin, Julia A. Klein, Johannes M. N. Knops, Kimberly J. La Pierre, Wei Li, Rebecca L. McCulley, Brett A. Melbourne, Joslin L. Moore, Lydia R. O’Halloran, Suzanne M. Prober, Anita C. Risch, Mahesh Sankaran, Martin Schuetz, and Andy Hector

PDF

Leaky termination at premature stop codons antagonizes nonsense-mediated mRNA decay in S. cerevisiae, Kim M. Keeling, Jessica Lanier, Ming Du, Joe Salas-Marco, Lin Gao, Anisa Kaenjak-Angeletti, and David M. Bedwell

PDF

Effect of the Internet Commerce on Dispersal Modes of Invasive Alien Species, Magdalena Lenda, Piotr Skorka, Johannes M.H. Knops, Dawid Moron, William J. Sutherland, Karolina Kuszewska, and Michal Woyciechowski

PDF

Effects of Nitrogen and Phosphorus Fertilization on Soil Carbon Fractions in Alpine Meadows on the Qinghai-Tibetan Plateau, Jin Hua Li, Yu Jie Yang, Bo Wen Li, Wen Jin Li, Gang Wang, and Johannes M. H. Knops

PDF

Glycosyl rotation and distortion by key residues in Endocellulase Cel6A from Theromobifida fusca, Tao Lu, Zuoming Zhang, and Chi Zhang

PDF

De novo assembly of the common marmoset transcriptome from NextGen mRNA sequences, Mnirnal D. Maudhoo, Dongren Ren, Julien S. Gradnigo, Robert M. Gibbs, Austin C. Lubker, Etsuko N. Moriyama, Jeffrey A. French, and Robert B. Norgen Jr.

PDF

The temperature independence of interaction strength in a sit-and-wait predator, Rachel A. Novich, Emma K. Erickson, Ryan M. Kalinoski, and John DeLong

PDF

Loss of Sirt1 Function Improves Intestinal Anti-Bacterial Defense and Protects from Colitis-Induced Colorectal Cancer, Giuseppe Lo Sasso, Dongryeol Ryu, Laurent Mouchiroud, Samodha C. Fernando, Christopher L. Anderson, Elena Katsyuba, Alessandra Piersigilli, Michael O. Hottiger, Kristina Schoonjans, and Johan Auwerx

PDF

Early song discrimination by nestling sparrows in the wild, Daizaburo Shizuka

PDF

Across-year social stability shapes network structure in wintering migrant sparrows, Daizaburo Shizuka, Alexis S. Chaine, Jennifer Anderson, Oscar Johnson, Inger Marie Laursen, and Bruce E. Lyon

PDF

Estimating the Frequency of Cry1F Resistance in Field Populations of the European Corn Borer (Lepidoptera: Crambidae), Blair D. Siegfried, Murugesan Rangasamy, Haichuan Wang, Terence A. Spencer, Chirakkal V. Haridas, Brigitte Tenhumberg, Douglas V. Sumerford, and Nicholas P. Storer

PDF

Urban ecology: advancing science and society, Colby J. Tanner, Frederick R. Adler, Nancy B. Grimm, Peter M. Groffman, Simon A. Levin, Jason Munshi-South, Diane E. Pataki, Mitchell Pavao-Zuckerman, and William G. Wilson

PDF

De Novo Transcriptome Assembly from Fat Body and Flight Muscles Transcripts to Identify Morph-Specific Gene Expression Profiles in Gryllus firmus, Neetha Nanoth Vellichirammal, Anthony J. Zera, Rudolf J. Schilder, Cody Wehrkamp, Jean-Jack M. Riethoven, and Jennifer A. Brisson

2013

PDF

Parasitoid Infestation Changes Female Mating Preferences, Oliver M. Beckers and William E. Wagner

PDF

Experimental confirmation that avian plumage traits function as multiple status signals in winter contests, Alexis S. Chaine, Allison M. Roth, Daizaburo Shizuka, and Bruce E. Lyon

PDF

DNA SEQUENCING REVEALS PATTERNS OF PREY SELECTION IN MIGRATING SHARP-SHINNED HAWKS Las Secuencias de ADN Revelan Patrones de Selección de Presas por Individuos Migratorios de Accipiter striatus, John DeLong, Nancy Cox, Steve Cox, Zachary Hurst, and Jeff Smith

PDF

Four distinct types of dehydration stress memory genes in Arabidopsis thaliana, Yong Ding, Ning Liu, Laetitia Virlouvet, Jean-Jack Riethoven, Michael Fromm, and Zoya Avramova

PDF

Disturbance Frequency and Vertical Distribution of Seeds Affect Long-Term Population Dynamics: A Mechanistic Seed Bank Model, Eric A. Eager, Chirakkal V. Haridas, Diana Pilson, Richard Rebarber, and Brigitte Tenhumberg

PDF

Global Attracting Equilibria for Coupled Systems with Ceiling Density Dependence, Eric A. Eager, Mary Hebert, Elise Hellwig, Francisco Hernandez, Richard Rebarber, Brigitte Tenhumberg, and Bryan Wigianto

PDF

Larval performance and kill rate of convergent ladybird beetles, Hippodamia convergens, on black bean aphids, Aphis fabae, and pea aphids, Acyrthosiphon pisum, Travis M. Hinkelman and Brigitte Tenhumberg

PDF

A virus-induced gene silencing method to study soybean cyst nematode parasitism in Glycine max, Pramod K. Kandoth, Robert Heinz, Greg Yeckel, Nathan W. Gross, Parijat S. Juvale, John Hill, Steven A. Whitham, Thomas J. Baum, and Melissa G. Mitchum

PDF

Large-scale spatial synchrony and cross-synchrony in acorn production by two California oaks, Walter D. Koenig and Johannes M.H. Knops

PDF

Candida albicans Czf1 and Efg1 Coordinate the Response to Farnesol during Quorum Sensing, White-Opaque Thermal Dimorphism, and Cell Death, Melanie L. Langford, Jessica C. Hargarten, Krista D. Patefield, Elizabeth Marta, Jill R. Blankenship, Saranna Fanning, Kenneth W. Nickerson, and Audrey L. Atkin

PDF

Population-level scaling of avian migration speed with body size and migration distance for powered fliers, Frank A. La Sorte, Daniel Fink, Wesley M. Hochachka, John DeLong, and Steve Kelling

PDF

Creating an Interdisciplinary Research Course in Mathematical Ecology, Glenn Ledder and Brigitte Tenhumberg

PDF

An Interdisciplinary Research Course in Theoretical Ecology for Young Undergraduates, Glenn Ledder, Brigitte Tenhumberg, and G. Travis Adams

PDF

Regional Contingencies in the Relationship between Aboveground Biomass and Litter in the World’s Grasslands, Lydia R. O’Halloran, Elizabeth T. Borer, Eric W. Seabloom, Andrew S. MacDougall, Elsa E. Cleland, Rebecca L. McCulley, Sarah Hobbie, W. Stanley Harpole, Nicole M. DeCrappeo, Chengjin Chu, Jonathan D. Bakker, Kendi F. Davies, Guozhen Du, Jennifer Firn, Nicole Hagenah, Kirsten S. Hofmockel, Johannes Knops, Wei Li, Brett A. Melbourne, John W. Morgan, John L. Orrock, Suzanne M. Prober, and Carly J. Stevens

PDF

Repeated elevational transitions in hemoglobin function during the evolution of Andean hummingbirds, Joana Projecto-Garcia, Chandrasekhar Natarajan, Hideaki Moriyama, Roy E. Weber, Angela Fago, Zachary A. Cheviron, Robert Dudley, Jimmy A. McGuire, Christopher C. Witt, and Jay F. Storz

PDF

Repeated elevational transitions in hemoglobin function during the evolution of Andean hummingbirds, Joana Projecto-Garcia, Chandrasekhar Natarajan, Hideaki Moriyama, Roy E. Weber, Angela Fago, Zachary A. Cheviron, Robert Dudley, Jimmy A. McGuire, Christopher C. Witt, and Jay F. Storz

PDF

Heritability and Inter-Population Differences in Lipid Profiles of Drosophila melanogaster, Cornelia J. F. Scheitz, Yu Guo, Angela M. Early, Lawrence G. Harshman, and Andrew G. Clark

PDF

Reductive evolution and the loss of PDC/PAS domains from the genus Staphylococcus, Neethu Shah, Rosmarie Gaupp, Hideaki Moriyama, Kent M. Eskridge, Etsuko N. Moriyama, and Greg A. Somerville

PDF

Inge Revsbech wins The Journal of Experimental Biology’s Outstanding Paper Prize 2013, Nicola Stead, Inge G. Revsbech, Hideaki Moriyama, Jay F. Storz, and Angela Fago

PDF

CD20 Antibody Primes B Lymphocytes for Type I Interferon Production, Dongsheng Xu, Andrew Staedman, and Luwen Zhang

PDF

Conformational B-Cell Epitope Prediction on Antigen Protein Structures: A Review of Current Algorithms and Comparison with Common Binding Site Prediction Methods, Bo Yao, Dandan Zheng, Shide Liang, and Chi Zhang

PDF

A Whole-Cell Biosensor for the Detection of Gold, Carla M. Zammit, Davide Quaranta, Shane Gibson, Anita J. Zaitouna, Christine Ta, Joel Brugger, Rebecca Y. Lai, Gregor Grass, and Frank Reith

PDF

Prevalence and correlates of Kaposi’s sarcoma-associated herpesvirus infection in a sample of men who have sex with men in eastern China, T. Zhang, H. Lin, V. Minhas, W. Zhu, C. Wood, and N. He

2012

PDF

Evolution of the PWWP-Domain Encoding Genes in the Plant and Animal Lineages, Raul Alvarez-Venegas and Zoya Avramova

PDF

Eavesdropping Parasitoids Do Not Cause the Evolution of Less Conspicuous Signaling Behavior in a Field Cricket, Oliver M. Beckers and William E. Wagner

PDF

Draft Genome Sequence of the Anaerobic, Nitrate-Dependent, Fe(II)-Oxidizing Bacterium Pseudogulbenkiania ferrooxidans Strain 2002, Kathryne G. Byrne-Bailey, Karrie A. Weber, and John D. Coates

PDF

ATX1-Generated H3K4me3 Is Required for Efficient Elongation of Transcription, Not Initiation, at ATX1- Regulated Genes, Yong Ding, Ivan Ndamukong, Zaoshi Xu, Hanna Lapko, Michael Fromm, and Zoya Avramova

PDF

L1pred: A Sequence-Based Prediction Tool for Catalytic Residues in Enzymes with the L1-logreg Classifier, Yongchao Dou, Jun Wang, Jialiang Yang, and Chi Zhang

PDF

Insect herbivory and propagule pressure influence Cirsium vulgare invasiveness across the landscape, James O. Eckberg, Brigitte Tenhumberg, and Svata M. Louda

PDF

Viscoelastic Properties of Cell Walls of Single Living Plant Cells Determined by Dynamic Nanoindentation, Céline M. Hayot, Elham Forouzesh, Ashwani Goel, Zoya Avramova, and Joseph A. Turner

PDF

Larval Performance and Kill Rate of Convergent Ladybird Beetles, Hippodamia convergens, on Black Bean Aphids, Aphis fabae, and Pea Aphids, Acyrthosiphon pisum, Travis M. Hinkelman and Brigitte Tenhumberg

PDF

Sex Allocation in California Oaks: Trade-Offs or Resource Tracking?, Johannes Knops and Walter D. Koenig

PDF

Template-Based Structure Prediction and Classification of Transcription Factors in Arabidopsis thaliana, Tao Lu, Yuedong Yang, Bo Yao, Song Liu, Yaoqi Zhou, and Chi Zhang

PDF

DFVF: database of fungal virulence factors, Tao Lu, Bo Yao, and Chi Zhang

PDF

Comparative Transitive and Temporal Orderliness in Dominance Networks, David McDonald and Daizaburo Shizuka

PDF

Urea Amidolyase (DUR1,2) Contributes to Virulence and Kidney Pathogenesis of Candida albicans, Dhammika H. M. L. P Navarathna, Michail S. Lionakis, Martin J. Lizak, Jeeva Munasinghe, Kenneth W. Nickerson, and David D. Roberts

PDF

Reducing odorous VOC emissions from swine manure using soybean peroxidase and peroxides, David B. Parker, Lingshuang Cai, Ki-Hyun Kim, Kristin E. Hales, Mindy J. Spiehs, Bryan L. Woodbury, Audrey L. Atkin, Kenneth Nickerson, and Krista D. Patefield

PDF

Influence of aphid honeydew on the foraging behavior of Hippodamia convergens larvae, Swapna R. Purandare and Brigitte Tenhumberg

PDF

Bacterial community structure of contrasting soils underlying Bornean rain forests: Inferences from microarray and next-generation sequencing methods, Sabrina E. Russo, Ryan Legge, Karrie A. Weber, Eoin L. Brodie, Katherine C. Goldfarb, Andrew K. Benson, and Sylvester Tan

PDF

Covariation between understorey light environments and soil resources in Bornean mixed dipterocarp rain forest, Sabrina E. Russo, Lin Zhang, and Sylvester Tan

PDF

Family Dynamics Through Time: Brood Reduction Followed by Parental Compensation with Aggression and Favoritism, Daizaburo Shizuka and Bruce E. Lyon

PDF

A Social Network Perspective on Measurements of Dominance Hierarchies, Daizaburo Shizuka and David B. McDonald

PDF

Tradeoffs limit the evolution of male traits that are attractive to females, William E. Wagner, Oliver M. Beckers, Amanda E. Tolle, and Alexandra Basolo

PDF

Concatenation and Concordance in the Reconstruction of Mouse Lemur Phylogeny: An Empirical Demonstration of the Effect of Allele Sampling in Phylogenetics, David W. Weisrock, Stacey DeWitt Smith, Lauren M. Chan, Karla Biebouw, Peter M. Kappeler, and Anne D. Yoder

PDF

SVMTriP: A Method to Predict Antigenic Epitopes Using Support Vector Machine to Integrate Tri-Peptide Similarity and Propensity, Bo Yao, Lin Zhang, Shide Liang, and Chi Zhang

2011

PDF

SuiteMSA: visual tools for multiple sequence alignment comparison and molecular sequence simulation, Catherine L. Anderson, Cory L. Strope, and Etsuko N. Moriyama

PDF

Use of Nape Tags for Marking Offspring of Precocial Waterbirds, Todd W. Arnold, Daizaburo Shizuka, Bruce E. Lyon, Jeffrey T. Pelayo, Katherine R. Mehl, Joshua J. Traylor, Wendy L. Reed, and Courtney L. Amundson

PDF

Survival Rates of Planidial Larvae of the Parasitoid Fly Ormia ochracea (Diptera: Tachinidae), Oliver M. Beckers, Cassandra M. Martin, and William E. Wagner Jr.

PDF

Male Field Crickets Infested by Parasitoid Flies Express Phenotypes that May Benefit the Parasitoids, Oliver M. Beckers and William E. Wagner