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2019

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Radiomic feature stability across 4D respiratory phases and its impact on lung tumor prognosis prediction, Qian Du, Michael Baine, Kyle Bavitz, Josiah McAllister, Xiaoying Liang, Hongfeng Yu, Jeffrey Ryckman, Lina Yu, Hengle Jiang, Sumin Zhou, Sumin Zhou, Chi Zhang, and Dandan Zheng

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Morphological changes in American kestrels (Falco sparverius) at continental migration sites, Teresa E. Ely, Christopher W. Briggs, Shawn E. Hawks, Gregory S. Kaltenecker, David L. Evans, Frank J. Nicoletti, Jean-François Therrien, Olin Allen, and John DeLong

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A self-marker-like protein governs hemocyte allorecognition in Halocynthia roretzi, Masaki Ema, Taizo Okada, Miki Takahashi, Masato Uchiyama, Hideo Kubo, Hideaki Moriyama, Hitoshi Miyakawa, and Midori Matsumoto

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Opportunities for behavioral rescue under rapid environmental change, Samuel B. Fey, David A. Vasseur, Karla Alujević, Kristy J. Kroeker, Michael L. Logan, Mary I. O'Connor, Volker H.W. Rudolf, John DeLong, Scott Peacor, Rebecca L. Selden, A Sih, and Susana Clusella‐Trullas

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Microbial Community of Saline, Alkaline Lakes in the Nebraska Sandhills Based on 16S rRNA Gene Amplicon Sequence Data, Nicole A. Fiore, David D. Dunigan, Julie J. Shaffer, Ryan Roberts, Sanjay Antony-Babu, Bradley A. Plantz, Kenneth W. Nickerson, Andrew K. Benson, and Karrie A. Weber

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Modeling Genomes to Phenomes to Populations in a Changing Climate: The Need for Collaborative Networks, Nika Galic, Allyson G. Hindle, John P. DeLong, Karen Watanabe, Valery Forbes, and C. Loren Buck

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Student Understanding of DNA Structure–Function Relationships Improves from Using 3D Learning Modules with Dynamic 3D Printed Models, Michelle E. Howell, Christine S. Booth, Sharmin M. Sikich, Tomáš Helikar, Rebecca Roston, Brain A. Couch, and Karin van Dijk

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Investigating how faculty social networks and peer influence relate to knowledge and use of evidence-based teaching practices, A.K. Lane, John Skvoretz, J.P. Ziker, B. A. Couch, B. Earl, J.E. Lewis, J.D. McAlpin, L.B. Prevost, S.E. Shadle, and M. Stains

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Investigating how faculty social networks and peer influence relate to knowledge and use of evidence-based teaching practices, A. K. Lane, J. Skvoretz, J. P. Ziker, B. A. Couch, B. Earl, J. E. Lewis, J. D. McAlpin, L. B. Prevost, S. E. Shadle, and M. Stains

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Phenotypically Plastic Responses to Predation Risk Are Temperature Dependent, Thomas M. Luhring, Janna M. Vavra, Clayton E. Cressler, and John DeLong

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Metabolism Underlies Physiological Homeostasis in Drosophila, Omera B. Matoo, Cole R. Julick, and Kristi Montooth

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“What Will I Experience in My College STEM Courses?” An Investigation of Student Predictions about Instructional Practices in Introductory Courses, Clara L. Meaders, Emma S. Toth, A. K. Lane, J. Kenny Shuman, Brian Couch, Marilyne Stains, MacKenzie R. Stetzer, Erin Vinson, and Michelle K. Smith

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Physiological and genomic evidence that selection on the transcription factor Epas1 has altered cardiovascular function in highaltitude deer mice, Rena M. Schweizer, Jonathan P. Velotta, Catherine M. Ivy, Matthew R. Jones, Sarah M. Muir, Gideon S. Bradburd, Jay F. Storz, Graham R. Scott, and Zachary A. Cheviron

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The accelerating influence of humans on mammalian macroecological patterns over the late Quaternary, Felisa A. Smith, Rosemary E. Elliott Smith, S. Kathleen Lyons, Jonathan L. Payne, and Amelia Villaseñor

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Tools for Change: Measuring Student Conceptual Understanding Across Undergraduate Biology Programs Using Bio-MAPS Assessments, Michelle K. Smith, Sara E. Brownell, Alison J. Crowe, N. G. Holmes, Jennifer K. Knight, Katharine Semsar, Mindi M. Summers, Cole Walsh, Christian D. Wright, and Brian A. Couch

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Life Ascending: Mechanism and Process in Physiological Adaptation to High-Altitude Hypoxia, Jay F. Storz and Graham R. Scott

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Changes in the diet and body size of a small herbivorous mammal (hispid cotton rat, Sigmodon hispidus) following the late Pleistocene megafauna extinction, Catalina P. Tomé, Emma A. Elliott Smith, S. Kathleen Lyons, Seth D. Newsome, and Felisa A. Smith

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Reorganization of surviving mammal communities after the end-Pleistocene megafaunal extinction, Anikó B. Tóth, S. Kathleen Lyons, W. Andrew Barr, Anna K. Behrensmeyer, Jessica L. Blois, René Bobe, Matt Davis, Andrew Du, Jussi T. Eronen, J. Tyler Faith, Danielle Fraser, Nicholas J. Gotelli, Gary R. Graves, Advait M. Jukar, Joshua H. Miller, Silvia Pineda-Munoz, Laura C. Soul, Amelia Villaseñor, and John Alroy

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Arena Size Modulates Functional Responses via Behavioral Mechanisms, Stella F. Uiterwaal, Anthony I. Dell, and John P. DeLong

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Body Condition Helps to Explain Metabolic Rate Variation in Wolf Spiders, Stella F. Uiterwaal and John P. DeLong

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Can VEGFC Form Turing Patterns in the Zebrafish Embyro?, Kenneth Y. Wertheim and Tina Roose

2018

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CD32 is expressed on cells with transcriptionally active HIV but does not enrich for HIV DNA in resting T cells, Mohamed Abdel-Mohsen, Leticia Kuri-Cervantes, Judith Grau-Exposito, Adam M. Spivak, Racheal A. Nell, Costin Tomescu, Surya Kumari Vadrevu, Leila B. Giron, Carla Serra-Peinado, Meritxell Genesca, Josep Castellvi, Guoxin Wu, Perla M. Del Rio Estrada, Mauricio Gonzalez-Navarro, Kenneth Lynn, Collin T. King, Sai Vemula, Kara Cox, Yanmin Wan, Qingsheng Li, Karam Mounzer, Jay Kostman, Ian Frank, Mirko Paiardini, Daria Hazuda, Gustavo Reyes-Teran, Douglas Richman, Bonnie Howell, Pablo Tebas, Javier Martinez-Picado, Vicente Planelles, Maria J. Buzon, Michael R. Betts, and Luis J. Montaner

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What Types of instructional shifts Do students experience? investigating active learning in science, Technology, engineering, and Math classes across Key Transition Points from Middle school to the University level, Kenneth Akiha, Emilie Brigham, Brain A. Couch, Justin Lewin, Marilyne Stains, MacKenzie R. Stetzer, Erin L. Vinson, and Michelle K. Smith

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Males and females evolve riskier traits in populations with eavesdropping parasitoids, Oliver M. Beckers and William E. Wagner

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RNAi Doxxes Segregation Distorters on the X, Justin P. Blumenstiel and Colin D. Meiklejohn

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Mitochondrial Dysfunction and Infection Generate Immunity–Fecundity Tradeoffs in Drosophila, Justin L. Buchanan, Colin D. Meiklejohn, and Kristi L. Montooth

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Fueling Defense: Effects of Resources on the Ecology and Evolution of Tolerance to Parasite Infection, Sarah A. Budischak and Clayton E. Cressler

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Feeding immunity: Physiological and Behavioral responses to infection and resource limitation, Sarah A. Budischak, Christina B. Hansen, Quentin Caudron, Romain Garnier, Tyler R. Kartzinel, István Pelczer, Clayton E. Cressler, Anieke van Leeuwen, and Andrea L. Graham

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Multiple–True–False Questions Reveal the Limits of the Multiple–Choice Format for Detecting Students with Incomplete Understandings, Brian Couch, Joanna K. Hubbard, and Chad Brassil

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Student, instructor, and observer agreement regarding frequencies of scientific teaching practices using the Measurement Instrument for Scientific Teaching-Observable (MISTO), Mary F. Durham, Jennifer Knight, Emily K. Bremers, Jameson D. DeFreece, Alex R. Paine, and Brian A. Couch

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Energetic tradeoffs control the size distribution of aquatic mammals, William Gearty, Craig R. McClain, and Jonathan Payne

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A Probable Case of Incipient Speciation in Schizocosa Wolf Spiders Driven by Allochrony, Habitat Use, and Female Mate Choice, R. Tucker Gilman, Kasey Fowler-Finn, and Eileen A. Hebets

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Evolutionary origins of vocal mimicry in songbirds, Maria Goller and Daizaburo Shizuka

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Cross-ecosystem effects of terrestrial predators link treefrogs, zooplankton, and aquatic primary production, Jessica L. Hite, Myra C. Hughey, Karen M. Warkentin, and James R. Vonesh

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Energy demand and the context-dependent effects of genetic interactions underlying metabolism, Luke A. Hoekstra, Cole R. Julick, Katelyn M. Mika, and Kristi L. Montooth

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Gene Turnover and Diversification of the α- and β- Globin Gene Families in Sauropsid Vertebrates, Federico G. Hoffmann, Michael W. Vandewege, Jay F. Storz, and Juan C. Opazo

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Presence of fruits decreases probability of retaining flowers in a sequentially flowering plant, Shivani Jadeja and Brigitte Tenhumberg

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Song recognition and heterospecific associations between 2 fairy-wren species (Maluridae), Allison E. Johnson, Christina Masco, and Stephen Pruett-Jones

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Reproductive promiscuity in the variegated fairy-wren: An alternative reproductive strategy in the absence of helpers?, Allison E. Johnson and Stephen Pruett-Jones

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Influenza D virus M2 protein exhibits ion channel activity in Xenopus laevis oocytes, Evan Kesinger, Jianing Liu, Aaron Jensen, Catherine P. Chia, Andrew Demers, and Hideaki Moriyama

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Molecular machinery of auxin synthesis,secretion, and perception in the unicellular chlorophyte alga Chlorella sorokiniana UTEX 1230, Maya Khasin, Rebecca E. Cahoon, Kenneth Nickerson, and Wayne R. Riekhof

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Change in dominance determines herbivore effects on plant biodiversity, Sally E. Koerner, Johannes Knops, Dustin J. Strong, and 80 more co-authors

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Synbiotics for Improved Human Health: Recent Developments, Challenges, and Opportunities, Janina A. Krumbeck, Jens Walter, and Robert W. Hutkins

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Predators modify the temperature dependence of life-history trade-offs, Thomas M. Luhring, Janna M. Vavra, Clayton E. Cressler, and John DeLong

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Gene flow mediates the role of sex chromosome meiotic drive during complex speciation, Colin D. Meiklejohn, Emily L. Landeen, Kathleen E. Gordon, Thomas Rzatkiewicz, Sarah B. Kingan, Anthony J. Geneva, Jeffrey P. Vedanayagam, Christina A. Muirhead, Daniel Garrigan, Daven C. Presgraves, and David L. Stern

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The development and application of bioinformatics core competencies to improve bioinformatics training and education, Nicola Mulder, Russell Schwartz, Michelle D. Brazas, Cath Brooksbank, Bruno Gaeta, Sarah L. Morgan, Mark A. Pauley, Anne Rosenwald, Gabriella Rustici, Michael Sierk, Tandy Warnow, and Lonnie Welch

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Molecular basis of hemoglobin adaptation in the high-flying bar-headed goose, Chandrasekhar Natarajan, Agnieszka Jendroszek, Amit Kumar, Roy E. Weber, Jeremy R. H. Tame, Angela Fago, and Jay F. Storz

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Temperature Drives Epidemics in a Zooplankton-Fungus Disease System: A Trait-Driven Approach Points to Transmission via Host Foraging, Marta S. Shocket, Alexander T. Strauss, Jessica L. Hite, Maja Šljivar, David J. Civitello, Meghan A. Duffy, Carla E. Cáceres, and Spencer R. Hall

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Parasite rearing and infection temperatures jointly influence disease transmission and shape seasonality of epidemics, Marta S. Shocket, Daniela Vergara, Andrew J. Sickbert, Jason M. Walsman, Alexander T. Strauss, Jessica L. Hite, Meghan A. Duffy, Carla E. Caceres, and Spencer R. Hall

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Binary-state speciation and extinction method is conditionally robust to realistic violations of its assumptions, Andrew G. Simpson, Peter J. Wagner, Scott L. Wing, and Charles B. Fenster

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Body size downgrading of mammals over the late Quaternary, Felisa A. Smith, Rosemary E. Elliott Smith, S. Kathleen Lyons, and Jonathan L. Payne

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A rapid and efficient method for enriching mitochondrial DNA from plants, Mackenzie M. Strehle, Emma Purfeerst, and Alan C. Christensen

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EcoEvo-MAPS: An Ecology and Evolution Assessment for Introductory through Advanced Undergraduates, Mindi M. Summers, Brian A. Couch, Jennifer K. Knight, Sara E. Brownell, Alison J. Crowe, Katharine Semsar, Christian D. Wright, and Michelle K. Smith

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Time-lagged effects of weather on plant demography: drought and Astragalus scaphoides, Brigitte Tenhumberg, Elizabeth E. Crone, Satu Ramula, and Andrew J. Tyre

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RNA-Seq of Kaposi's sarcoma reveals alterations in glucose and lipid metabolism, For Yue Tso, Andrew V. Kossenkov, Salum J. Lidenge, Owen Ngalamika, John R. Ngowi, Julius Mwaiselage, Jayamanna Wickramasinghe, Eun Hee Kwon, John T. West, Paul M. Lieberman, and Charles Wood

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Dehydration Stress Memory: Gene Networks Linked to Physiological Responses During Repeated Stresses of Zea mays, Laetitia Virlouvet, Thomas J. Avenson, Qian Du, Chi Zhang, Ning Liu, Michael Fromm, Zoya Avramova, and Sabrina E. Russo

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Evidence for Trait-Based Dominance in Occupancy among Fossil Taxa and the Decoupling of Macroecological and Macroevolutionary Success, Peter Wagner, Roy E. Plotnick, and S. Kathleen Lyons

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Temporal Variation in Predation Risk May Explain Daily Rhythms of Foraging Behavior in an Orb-Weaving Spider, J. Colton Watts, Thomas C. Jones, Ashley Herrig, Madeleine Miller, and Brigitte Tenhumberg

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Transcriptomic, Functional, and Network Analyses Reveal Novel Genes Involved in the Interaction between Caenorhabditis elegans and Stenotrophomonas maltophilia, Corin V. White and Michael A. Herman

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Repeats of Unusual Size in Plant Mitochondrial Genomes: Identification, Incidence and Evolution, Emily L. Wynn and Alan C. Christensen

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Effects of elevated CO2, increased nitrogen deposition, and plant diversity on aboveground litter and root decomposition, Xiaoan Zuo and Johannes Knops

2017

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Multiple Streptomyces species with distinct secondary metabolomes have identical 16S rRNA gene sequences, Sanjay Antony-Babu, Didier Stien, Véronique Eparvier, Delphine Parrot, Sophie Tomasi, and Marcelino Suzuki

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Sigma Virus (DMelSV) Incidence in Lines of Drosophila melanogaster Selected for Survival following Infection with Bacillus cereus, Meghan L. Bentz, Eve A. Humphrey, and Lawrence G. Harshman

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Nutrient addition shifts plant community composition towards earlier flowering species in some prairie ecoregions in the U.S. Central Plains, Lori A. Biederman, Brent Mortensen, Philip Fay, Nicole Hagenah, Johannes M. H. Knops, Kimberly J. La Pierre, Ramesh Laungani, Eric Lind, Rebecca McCulley, Sally Power, Eric W. Seabloom, and Pedro Tognetti

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Student Buy-In Toward Formative Assessments: The Influence of Student Factors and Importance for Course Success, Kathleen R. Brazeal and Brian A. Couch

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Multiple hypotheses explain variation in extra-pair paternity at different levels in a single bird family, Lyanne Brouwer, Martijn van de Pol, Nataly Hidalgo Aranzamendi, Glen Bain, Daniel T. Baldassarre, Lesley C. Brooker, Michael G. Brooker, Diane Diane Colombelli-Négrel, Erik Enbody, Kurt Gielow, Michelle L. Hall, Allison E. Johnson, Jordan Karubian, Sjouke A. Kingma, Sonia Kleindorfer, Marina Louter, Raoul A. Mulder, Anne Peters, Stephen Pruett-Jones, Keith A. Tarvin, Derrick J. Thrasher, Claire W. Varian-Ramos, Michael S. Webster, and Andrew Cockburn

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First-Year and Non-First-Year Student Expectations Regarding In-Class and Out-of-Class Learning Activities in Introductory Biology, Tanya L. Brown and Brian A. Couch

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Unexpected Nongenetic Individual Heterogeneity and Trait Covariance in Daphnia and Its Consequences for Ecological and Evolutionary Dynamics, Clayton E. Cressler, Stefan Bengtson, and William A. Nelson

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Ecological Pleiotropy Suppresses the Dynamic Feedback Generated by a Rapidly Changing Trait, John DeLong

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The combined effects of reactant kinetics and enzyme stability explain the temperature dependence of metabolic rates, John DeLong, J. P. Gibert, Thomas M. Luhring, Gwendolyn C. Bachman, B. Reed, A. Neyer, and Kristi Montooth

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Measurement Instrument for Scientific Teaching (MIST): A Tool to Measure the Frequencies of Research-Based Teaching Practices in Undergraduate Science Courses, Mary F. Durham, Jennifer K. Knight, and Brian A. Couch

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Assessing the Influence of Temporal Autocorrelations on the Population Dynamics of a Disturbance Specialist Plant Population in a Random Environment, Eric A. Eager, Diana Pilson, Helen M. Alexander, and Brigitte Tenhumberg

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Biotic interchange has structured Western Hemisphere mammal communities, Danielle Fraser and S. Kathleen Lyons

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Geographical Variation in Community Divergence: Insights from Tropical Forest Monodominance by Ectomycorrhizal Trees*, Tadashi Fukami, Mifuyu Nakajima, Claire Fortunel, Paul V. Fine, Christopher Baraloto, Sabrina E. Russo, and Kabir G. Peay

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How Question Types Reveal Student Thinking: An Experimental Comparison of Multiple-True-False and Free-Response Formats, Joanna K. Hubbard, Macy A. Potts, and Brian Couch

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Knowing your own: A classroom case study using the scientific method to investigate how birds learn to recognize their offspring, Joanna K. Hubbard, Daizaburo Shizuka, and Brian A. Couch

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The economic value of grassland species for carbon storage, Bruce A. Hungate, Edward B. Barbier, Amy W. Ando, Samuel P. Marks, Peter B. Reich, Natasja van Gestel, David Tilman, Johannes M. H. Knops, David U. Hooper, Bradley J. Butterfield, and Bradley J. Cardinale

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Phytophagous insect oviposition shifts in response to probability of flower abortion owing to the presence of basal fruits, Shivani Jadeja and Brigitte Tenhumberg

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Testing the Terminal Investment Hypothesis in California Oaks, Walter D. Koenig, Johannes M.H. Knops, William J. Carmen, and Mario B. Pesendorfer

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Distinct transcriptome profiles of Gag-specific CD8+ T cells temporally correlated with the protection elicited by SIVΔnef live attenuated vaccine, Wuxun Lu, Yanmin Wan, Fangrui Ma, R. Paul Johnson, and Qingsheng Li

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The emerging contribution of social wasps to grape rot disease ecology, Anne A. Madden, Sean D. Boyden, Jonathan-Andrew N. Soriano, Tyler B. Corey, Jonathan W. Leff, Noah Fierer, and Philip T. Starks

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MICROBIAL STRAINS AND METHODS OF MAKING AND USING, Nicole Roswitha Buan Murphy and Jennifer Catlett

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Phosphate starvation induces replacement of phospholipids with the betaine lipid diacylglycerol-N,N,N-trimethylhomoserine in the human fungal pathogen Candida albicans, Surabhi Naik, Rebecca E. Cahoon, Bridget Tripp, Christian Elowsky, Sophie Alvarez, Kan Liu, Chi Zhang, and Wayne R. Riekhof

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Abundance and Distribution of Microbial Cells and Viruses in an Alluvial Aquifer, Donald Pan, Jason Nolan, Kenneth H. Williams, and Karrie A. Weber

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Spatially biased dispersal of acorns by a scatter-hoarding corvid may accelerate passive restoration of oak habitat on California’s largest island, Mario B. Pesendorfer, T. Scott Sillett, and Scott A. Morrison

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Identification of the ATPase Subunit of the Primary Maltose Transporter in the Hyperthermophilic Anaerobe Thermotoga maritima, Raghuveer Singh, Derrick White, and Paul H. Blum

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Sensory system plasticity in a visually specialized, nocturnal spider, Jay A. Stafstrom, Peter Michalik, and Eileen Hebets

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Nitrogen addition and ecosystem functioning: Both species abundances and traits alter community structure and function, Anna R. Tatarko and Johannes M.H. Knops

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Large but uneven reduction in fish size across species in relation to changing sea temperatures, Itai van Rijn, Yehezkel Buba, John DeLong, Moshe Kiflawi, and Jonathan Belmaker

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Vertebrate body size jumps the Wright way, Peter J. Wagner

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Host allometry influences the evolution of parasite host-generalism: theory and meta-analysis, Josephine G. Walker, Amy Hurford, Jo Cable, Amy R. Ellison, Stephen J. Price, and Clayton E. Cressler

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Host allometry influences the evolution of parasite host-generalism: theory and meta-analysis, Josephine G. Walker, Amy Hurford, Jo Cable, Amy R. Ellison, Stephen J. Price, and Clayton E. Cressler

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Increased productivity in wet years drives a decline in ecosystem stability with nitrogen additions in arid grasslands, Junfeng Wang, Johannes M.H. Knops, Chad E. Brassil, and Chunsheng Mu

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Cumulative herbivory outpaces compensation for early floral damage on a monocarpic perennial thistle, Natalie M. West and Svata M. Louda

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Contribution of Pentose Catabolism to Molecular Hydrogen Formation by Targeted Disruption of Arabinose Isomerase (araA) in the Hyperthermophilic Bacterium Thermotoga maritima, Derrick White, Raghuveer Singh, Deepak Rudrappa, Jackie Mateo, Levi Kramer, Laura Freese, and Paul H. Blum

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Cooperative processing of primary miRNAs by DUS16 and DCL3 in the unicellular green alga Chlamydomonas reinhardtii, Tomohito Yamasaki and Heriberto D. Cerutti

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Glaciation as a migratory switch, Robert M. Zink and Aubrey S. Gardner

2016

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A Guide for Graduate Students Interested in Postdoctoral Positions in Biology Education Research, Melissa L. Aikens, Lisa A. Corwin, Tessa C. Andrews, Brian A. Couch, Sarah L. Eddy, Lisa McDonnell, and Gloriana Trujillo

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How Many Kinds of Birds Are There and Why Does It Matter?, George F. Barrowclough, Joel Cracraft, John Klicka, and Robert M. Zink

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Experimental Microbial Evolution of Extremophiles, Paul H. Blum, Deepak Rudrappa, Raghuveer Singh, Samuel McCarthy, and Benjamin J. Pavlik