Early Prediction of Soybean Traits through Color and Texture Features of Canopy RGB Imagery

Authors

Wenan Yuan, University of Nebraska - LincolnFollow
Nuwan Kumara Wijewardane, University of Nebraska - LincolnFollow
Shawn Jenkins, University of Nebraska - LincolnFollow
Geng Bai, University of Nebraska-LincolnFollow
Yufeng Ge, University of Nebraska-LincolnFollow
George L. Graef, University of Nebraska - LincolnFollow

ORCID IDs

Wenan Yuan

Date of this Version

2019

Citation

Scientific Reports | (2019) 9:14089

Comments

© The Author(s) 2019

Open access

https://doi.org/10.1038/s41598-019-50480-x

Abstract

Global crop production is facing the challenge of a high projected demand, while the yields of major crops are not increasing at sufficient speeds. Crop breeding is an important way to boost crop productivity, however its improvement rate is partially hindered by the long crop generation cycles. If end-season crop traits such as yield can be predicted through early-season phenotypic measurements, crop selection can potentially be made before a full crop generation cycle finishes. This study explored the possibility of predicting soybean end-season traits through the color and texture features of early-season canopy images. Six thousand three hundred and eighty-three images were captured at V4/V5 growth stage over 6039 soybean plots growing at four locations. One hundred and forty color features and 315 gray-level co-occurrence matrix-based texture features were derived from each image. Another two variables were also introduced to account for location and timing differences between the images. Five regression and five classification techniques were explored. Best results were obtained using all 457 predictor variables, with Cubist as the regression technique and Random Forests as the classification technique. Yield (RMSE = 9.82, R² = 0.68), Maturity (RMSE = 3.70, R² = 0.76) and Seed Size (RMSE = 1.63, R² = 0.53) were identified as potential soybean traits that might be early predictable.