Faculty associated with the Center for Plant Science Innovation include:

Saet-Byul Kim, Plant-microbe interactions, plant immunity, disease susceptibility, fungal pathogen
In Memory ~ James R. Alfano, Bacterial pathogens and plant immunity
Edgar B. Cahoon, Lipid metabolism, function, and biotechnology
Heriberto D. Cerutti, Functional genomics, epigenetics, biotechnology, biofuels
Yufeng Ge, Plant phenotyping and image analysis, Precision agriculture and spatial statistics
Katarzyna Glowacka, Crop abiotic stress resistance
David Holding, Cereal endosperm functional genomics
David Hyten Jr., Soybean genetics and genomics Jennifer Markham, Lipid biochemistry, metabolomics, plant physiology
Etsuko N. Moriyama,Bioinformatics, genomics, and molecular evolution,br> Jeffrey P. Mower, Plant evolutionary and comparative genomics
Toshihiro Obata, Plant primary metabolism
Clemencia Rojas, Bacterial pathogen, bacterial diseases, crops, plant defense responses
Rebecca Roston, Lipid metabolism and abiotic stress
Sabrina Russo, Microbiome, plant ecology, ecophysiology, and biodiversity
Daniel Schachtman, Root microbiomes and abiotic stress tolerance
James Schnable, Plant genomics and phenomics
James Van Etten, Giant viruses infecting algae
Harkamal Walia, Plant phenomics and genomics
Jinliang Yang, Population genetics and genomics, Microbiome, and Plant phenomics
Bin Yu, RNA silencing, Epigenetics and functional genomics
Lirong Zeng, Post-translational modifications and plant immunity
Chi Zhang, Bioinformatics and computational systems biology
T. Jack Morris, Emeritus

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2023

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Plant breeding advancements with “CRISPR-Cas” genome editing technologies will assist future food security, M. AHMAD

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Mycorrhizal feedbacks influence global forest structure and diversity, Camille S. Delavaux, Joseph A. LaManna, Jonathan A. Myers, Richard P. Phillips, Salomón Aguilar, David Allen, Alfonso Alonso, Kristina J. Anderson-Teixeira, Matthew E. Baker, Jennifer L. Baltzer, Pulchérie Bissiengou, Mariana Bonfim, Norman A. Bourg, Warren Y. Brockelman, David F.R.P. Burslem, Li Wan Chang, Yang Chen, Jyh Min Chiang, Chengjin Chu, Keith Clay, Susan Cordell, Mary Cortese, Jan den Ouden, Christopher Dick, Sisira Ediriweera, Erle C. Ellis, Anna Feistner, Amy L. Freestone, Thomas Giambelluca, Christian P. Giardina, Gregory S. Gilbert, Fangliang He, Jan Holík, Robert W. Howe, Walter Huaraca Huasca, Stephen P. Hubbell, Faith Inman, Patrick A. Jansen, Daniel J. Johnson, Kamil Kral, Sabrina E. Russo, and et al.

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Genome assembly of the Brassicaceae diploid Orychophragmus violaceus reveals complex whole-genome duplication and evolution of dihydroxy fatty acid metabolism, Fan Huang, Peng Chen, Xinyu Tang, Ting Zhong, Taihua Yang, Chinedu Charles Nwafor, Chao Yang, Xianhong Ge, Hong An, Zaiyun Li, Edgar B. Cahoon, and Chunyu Zhang

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Soybean GmSAUL1, a Bona Fide U-Box E3 Ligase, Negatively Regulates Immunity Likely through Repressing the Activation of GmMPK3, Jun-Mei Li, Mei-Yan Ye, Chaofeng Wang, Xiao-Han Ma, Ni-Ni Wu, Chen-Li Zhong, Yanjun Zhang, Ninghui Cheng, Paul A. Nakata, Lirong Zeng, and Jian-Zhong Liu

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Mechanism of sphingolipid homeostasis revealed by structural analysis of Arabidopsis SPT-ORM1 complex, Peng Liu, Tian Xie, Xinyue Wu, Gongshe Han, Sita D. Gupta, Zike Zhang, Jian Yue, Feitong Dong, Kenneth Gable, Somashekarappa Niranjanakumari, Wanyuan Li, Lin Wang, Wenchen Liu, Ruifeng Yao, Edgar B. Cahoon, Teresa M. Dunn, and Xin Gong

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Exploring the Potential of Heterosis to Improve Nitrogen Use Efficiency in Popcorn Plants, Talles de Oliveira Santos, Antônio Teixeira do Amaral Junior, Rosimeire Barboza Bispo, Wallace de Paula Bernado, Bruna Rohem Simão, Valter Jário de Lima, Marta Simone Mendonça Freitas, Freddy Mora-Poblete, Roberto dos Santos Trindade, Samuel Henrique Kamphorst, Weverton Pereira Rodrigues, Eliemar Campostrini, Flávia Nicácio Viana, and Cosme Damião Cruz

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Sphingolipid Long-Chain Base Signaling in Compatible and Non-Compatible Plant–Pathogen Interactions in Arabidopsis, Mariana Saucedo-García, Ariadna González-Solís, Priscila Rodríguez-Mejía, Guadalupe Lozano-Rosas, Teresa de Jesús Olivera-Flores, Laura Carmona-Salazar, A. Arturo Guevara-García, Edgar B. Cahoon, and Marina Gavilanes-Ruíz

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A role for heritable transcriptomic variation in maize adaptation to temperate environments, Guangchao Sun, Huihui Yu, Peng Wang, Martha Lopez‑Guerrero, Ravi V. Mural, Olivier N. Mizero, Marcin Grzybowski, Baoxing Song, Karin V. van Dijk, Daniel P. Schachtman, Chi Zhang, and James C. Schnable

2022

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Genomics and transcriptomics to protect rice (Oryza sativa L.) from abiotic stressors: -pathways to achieving zero hunger, Mushtaq Ahmad

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The pho1;2a'-m1.1 allele of Phosphate1 conditions misregulation of the phosphorus starvation response in maize (Zea mays ssp. mays L.), Ana Laura Alonso-Nieves, M. Nancy Salazar-Vidal, J. Vladimir Torres-Rodríguez, Leonardo M. Pérez-Vázquez, Julio A. Massange-Sánchez, C. Stewart Gillmor, and Ruairidh J. H. Sawers

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Expression of AtWRI1 and AtDGAT1 during soybean embryo development influences oil and carbohydrate metabolism, Cintia Lucía Arias, Truyen Quach, Tu Huynh, Hanh Nguyen, Ademar Moretti, Yu Shi, Ming Guo, Amira Rasoul, Kyujung Van, Leah McHale, Thomas E. Clemente, Ana Paula Alonso, and Chi Zhang

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Cell-specific pathways recruited for symbiotic nodulation in the Medicago truncatula legume, Sergio Alan Cervantes-Pérez, Sandra Thibivilliers, Carole Laffont, Andrew D. Farmer, Florian Frugier, and Marc Libault

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Divergent evolution of extreme production of variant plant monounsaturated fatty acids, Lu Gan, Kiyoul Park, Jin Chai, Evan M. Updike, Hyojin Kim, Adam Voshall, Sairam Behera, Xiao-Hong Yu, Yuanheng Cai, Chunyu Zhang, Mark A. Wilson, Jeffrey P. Mower, Etsuko Moriyama, Chi Zhang, Sireewan Kaewsuwan, Qun Liu, John Shanklin, and Edgar B. Cahoon

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Variation in morpho‑physiological and metabolic responses to low nitrogen stress across the sorghum association panel, Marcin Grzybowski, Mackenzie Zwiener, Mackenzie Zwiener, Hongyu Jin, Nuwan K. Wijewardane, Abbas Atefi, Michael J. Naldrett, Sophie Alvarez, Yufeng Ge, and James C. Schnable

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FDDM1 and FDDM2, Two SGS3-like Proteins, Function as a Complex to Affect DNA Methylation in Arabidopsis, Shengjun Li, Weilong Yang, Yunfeng Liu, Guangyong Li, Xiang Liu, Yaling Liu, James R. Alfano, Chi Zhang, and Bin Yu

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Identification and Characterization of Circular RNAs in Brassica rapa in Response to Plasmodiophora brassicae, Huishan Liu, Chinedu Charles Nwafor, Yinglan Piao, Xiaonan Li, Zongxiang Zhan, and Zhongyun Piao

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Association mapping across a multitude of traits collected in diverse environments in maize, Ravi V. Mural, Guangchao Sun, Marcin Grzybowski, Michael C. Tross, Hongyu Jin, Christine Smith, Linsey Newton, Carson M. Andorf, Margaret R. Woodhouse, Addie M. Thompson, Brandi Sigmon, and James C. Schnable

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Genetic and Biochemical Investigation of Seed Fatty Acid Accumulation in Arabidopsis, Chinedu Charles Nwafor, Delin Li, Ping Qin, Long Li, Wei Zhang, Yuanwei Zhou, Jingjing Xu, Yongtai Yin, Jianbo Cao, Limin He, Fu Xiang, Chao Liu, Liang Guo, Yongming Zhou, Edgar B. Cahoon, and Chunyu Zhang

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Insect pest management with sex pheromone precursors from engineered oilseed plants, Hong-Lei Wang, Bao-Jian Ding, Jian-Qing Dai, Tara J. Nazarenus, Rafael Borges, Agenor Mafra-Neto, Edgar B. Cahoon, Per Hofvander, Sten Stymne, and Christer Löfstedt

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qTeller: a tool for comparative multi-genomic gene expression analysis, Margaret R. Woodhouse, Shatabdi Sen, David Schott, John L. Portwood II, Michael Freeling, Justin W. Walley, Carson M. Andorf, and James Schnable

2021

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Dissecting the regulatory roles of ORM proteins in the sphingolipid pathway of plants, Adil Alsiyabi, Ariadna Gonzalez Solis, Edgar B. Cahoon, and Rajib Saha

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Plasma Membrane Fluidity: An Environment Thermal Detector in Plants, Dora L. Cano-Ramirez, Laura Carmona-Salazar, Francisco Morales-Cedillo, Jorge Ramírez-Salcedo, Edgar B. Cahoon, and Marina Gavilanes-Ruíz

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Lichens and biofilms: Common collective growth imparts similar developmental strategies, Erin C. Carr, Steven D. Harris, Joshua R. Herr, and Wayne Riekhof

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Somatic variants for seed and fruit set in grapevine, Laura Costantini, Paula Moreno-Sanz, Chinedu Charles Nwafor, Silvia Lorenzi, Annarita Marrano, Fabiana Cristofolini, Elena Gottardini, Stefano Raimondi, Paola Ruffa, Ivana Gribaudo, Anna Schneider, and Maria Stella Grando

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Hyperspectral reflectance-based phenotyping for quantitative genetics in crops: Progress and challenges, Marcin Grzybowski, Kuwan K. Wijewardane, Abbas Atefi, Yufeng Ge, and James C. Schnable

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Molecular-assisted breeding for soybean with high oleic/low linolenic acid and elevated vitamin E in the seed oil, Katherine Hagely, Anji Reddy Konda, Jeong-Hwa Kim, Edgar B. Cahoon, and Kristin Bilyeu

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72-h diurnal RNA-seq analysis of fully expanded third leaves from maize, sorghum, and foxtail millet at 3-h resolution, Xianjun Lai, Claire Bendix, Yan Zhang, James Schnable, and Frank G. Harmon

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Predicting transcriptional responses to cold stress across plant species, Xiaoxi Meng, Zhikai Liang, Xiuru Dai, Yang Zhang, Samira Mahboub, Daniel W. Ngu, Rebecca L. Roston, and James C. Schnable

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Predicting transcriptional responses to cold stress across plant species, Xiaoxi Meng, Zhikai Liang, Xiuru Dai, Yang Zhang, Samira Mahboub, Daniel W. Ngu, Rebecca Roston, and James Schnable

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Complete Mitogenomes of Two Aragoa Species and Phylogeny of Plantagineae (Plantaginaceae, Lamiales) Using Mitochondrial Genes and the Nuclear Ribosomal RNA Repeat, Jeffrey P. Mower, Lilly Hanley, Kirsten Wolff, Natalia Pabón-Mora, and Favio González

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An Ancient, Light-Dependent Hydrocarbon-Forming Enzyme, Ananya Mukherjee

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Compounds derived from bacteria enhance marine diatom growth, Ananya Mukherjee

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Toward sustainable production of value-added bioenergy and industrial oils in oilseed and biomass feedstocks, Kiyoul Park, Sanju A. Sanjaya, Truyen Quach, and Edgar B. Cahoon

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Production of tocotrienols in seeds of cotton (Gossypium hirsutum L.) enhances oxidative stability and offers nutraceutical potential, Shanmukh S. Salimath, Trevor B. Romsdahl, Anji Reddy Konda, Wei Zhang, Edgar B. Cahoon, Michael K. Dowd, Thomas C. Wedegaertner, Kater D. Hake, and Kent D. Chapman

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InMut-finder: a software tool for insertion identification in mutagenesis using Nanopore long reads, Rui Song, Ziyao Wang, Hui Wang, Han Zhang, Xuemeng Wang, Hanh Nguyen, David Holding, Bin Yu, Tom Clemente, Shangang Jia, and Chi Zhang

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Disruption of long-chain base hydroxylation alters growth and impacts sphingolipid synthesis in Physcomitrella patens, Abraham R. Steinberger, William Oscar Merino, Rebecca E. Cahoon, Edgar B. Cahoon, and Daniel V. Lynch

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3D reconstruction identifies loci linked to variation in angle of individual sorghum leaves, Michael C. Tross, Mathieu Gaillard, Mackenzie Zwiener, Chenyong Miao, Ryleigh J. Grove, Bosheng Li, Bedrich Benes, and James C. Schnable

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The Sorghum bicolor Root Exudate Sorgoleone Shapes Bacterial Communities and Delays Network Formation, Peng Wang, Yen Ning Chai, Rebecca Roston, Franck E. Dayan, and Daniel P. Schachtman

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Quantitative trait loci controlling agronomic and biochemical traits in Cannabis sativa, Patrick Woods, Brian J. Campbell, Timothy J. Nicodemus, Edgar B. Cahoon, Jack L. Mullen, and John K. McKay

2020

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Plant segmentation by supervised machine learning methods, Jason Adams, Yumou Qiu, Yuhang Xu, and James C. Schnable

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Oxidosqualene cyclases involved in the biosynthesis of triterpenoids in Quercus suber cork, Lucas Busta, Olga Serra, Ok Tae Kim, Marisa Molinas, Irene Peré-Fossoul, Mercè Figueras, and Reinhard Jetter

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IsoSeq transcriptome assembly of C3 panicoid grasses provides tools to study evolutionary change in the Panicoideae, Daniel S. Carvalho, Aime V. Nishimwe, and James C. Schnable

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Dynamic Transcriptomic and Phosphoproteomic Analysis During Cell Wall Stress in Aspergillus nidulans, Cynthia Chelius, Walker Huso, Samantha Reese, Alexander Doan, Stephen Lincoln, Kelsi Lawson, Boa Tran, Raj Purohit, Trevor Glaros, Ranjan Srivastava, Steven D. Harris, and Mark R. Marten

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Non-homology-based prediction of gene functions in maize (Zea mays ssp. mays), Xiuru Dai, Zheng Xu, Zhikai Liang, Xiaoyu Tu, Silin Zhong, James C. Schnable, and Pinghua Li

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Non-homology-based prediction of gene functions in maize (Zea mays ssp. mays), Xiuru Dai, Zheng Xu, Zhikai Liang, Xiaoyu Tu, Silin Zhong, James Schnable, and Pinghua Li

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Compounds for Increasing Lipid Synthesis and Storage, Concetta DiRusso and Nishikant Wase

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Voxel carving-based 3D reconstruction of sorghum identifies genetic determinants of light interception efficiency, Mathieu Gaillard, Chenyong Miao, James C. Schnable, and Bedrich Benes

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Advances in plant phenomics: From data and algorithms to biological insights, Sunil K. Kenchanmane Raju, Addie M. Thompson, and James Schnable

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Leaf Angle eXtractor: A high-throughput image processing framework for leaf angle measurements in maize and sorghum, Sunil Kumar Kenchanmane Raju, Miles Adkins, Alex Enersen, Daniel Santana de Carvalho, Anthony J. Studer, Baskar Ganapathysubramanian, Patrick Schnable, and James C. Schnable

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Leaf Angle eXtractor: A high-throughput image processing framework for leaf angle measurements in maize and sorghum, Sunil Kumar Kenchanmane Raju, Miles Adkins, Alex Enersen, Daniel Santana de Carvalho, Anthony J. Studer, Baskar Ganapathysubramanian, Patrick S. Schnable, and James C. Schnable

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Advances in plant phenomics: From data and algorithms to biological insights, Sunil Kumar Kenchanmane Raju, Addie M. Thompson, and James Schnable

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Interspecific analysis of diurnal gene regulation in panicoid grasses identifies known and novel regulatory motifs, Xianjun Lai, Claire Bendix, Lang Yan, Yang Zhang, James C. Schnable, and Frank G. Harmon

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METHODS AND COMPOSITIONS FOR OBTAINING USEFUL PLANT TRAITS, Sally Mackenzie, Michael Fromm, Kamaldeep Viridi, and Yashitola Wamboldt

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Semantic Segmentation of Sorghum Using Hyperspectral Data Identifies Genetic Associations, Chenyong Miao, Alejandro Pages, Zheng Xu, Eric Rodene, Jinliang Yang, and James C. Schnable

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Increased Power and Accuracy of Causal Locus Identification in Time Series Genome-wide Association in Sorghum1[OPEN], Chenyong Miao, Yuhang Xu, Sanzhen Liu, Patrick S. Schnable, and James C. Schnable

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Metabolic profiles of six African cultivars of cassava (Manihot esculenta Crantz) highlight bottlenecks of root yield, Toshihiro Obata, Patrick A.W. Klemens, Laise Rosado-Souza, Armin Schlereth, Andreas Gisel, Livia Stavolone, Wolfgang Zierer, Nicolas Morales, Lukas A. Mueller, Samuel C. Zeeman, Frank Ludewig, Mark State, Uwe Sonnewald, H. Ekkehard Neuhaus, and Alisdair R. Femie

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A High-Throughput Phenotyping Pipeline for Image Processing and Functional Growth Curve Analysis, Ronghao Wang, Yumuo Qiu, Yuzhen Zhou, Zhikai Liang, and James Schnable

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DCT4—A New Member of the Dicarboxylate Transporter Family in C4 Grasse, Sarit Weissmann, Pu Huang, Madeline A. Wiechert, Koki Furuyama, Thomas P. Brutnell, Mitsutaka Taniguchi, James C. Schnable, and Todd C. Mockler

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Evolutionary and functional genomics of DNA methylation in maize domestication and improvement, Gen Xu, Jing Lyu, Qing Li, Han Liu, Dafang Wang, Mei Zhang, Nathan M. Springer, Jeffrey Ross-Ibarra, and Jinliang Yang

2019

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Manipulation of β-carotene levels in tomato fruits results in increased ABA content and extended shelf-life, Gianfranco Diretto, Sarah Frusciante, Claudia Fabbri, Nicolas Schauer, Lucas Busta, Zhonghua Wang, Antonio J. Matas, Alessia Fiore, Jocelyn K. C. Rose, Alisdair R. Fernie, Reinhard Jetter, Benedetta Mattei, Jim Giovannoni, and Giovanni Giuliano

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Network‐based feature selection reveals substructures of gene modules responding to salt stress in rice, Qian Du, Malachy Campbell, Huihui Yu, Kan Liu, Harkamal Walia, Qi Zhang, and Chi Zhang

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FAD2 Gene Radiation and Positive Selection Contributed to Polyacetylene Metabolism Evolution in Campanulids, Tao Feng, Ya Yang, Lucas Busta, Edgar B. Cahoon, Hengchang Wang, and Shiyou Lü

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FAD2 Gene Radiation and Positive Selection Contributed to Polyacetylene Metabolism Evolution in Campanulids1[OPEN], Tao Feng, Ya Yang, Lucas Busta, Edgar B. Cahoon, Hengchang Wang, and Shiyou Lü

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Drought-responsive genes, late embryogenesis abundant group3 (LEA3) and vicinal oxygen chelate, function in lipid accumulation in Brassica napus and Arabidopsis mainly via enhancing photosynthetic efficiency and reducing ROS, Yu Liang, Kai Kang, Lu Gan, Shaobo Ning, Jinye Xiong, Shuyao Song, Lingzhi Xi, Senying Lai, Yongtai Yin, Jianwei Gu, Jun Xiang, Shisheng Li, Baoshan Wang, and Maoteng Li

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Assessing Anthocyanin Biosynthesis in Solanaceae as a Model Pathway for Secondary Metabolism, Zou Li, Trisha Vickrey, Moira G. McNally, Shirley J. Sato, Thomas E. Clemente, and Jeffrey P. Mower

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The Database of Identified Root-Specific Genes and their Promoters in Maize, Sorghum, and Soybean, Gleb Moisseyev, Divith Rajagopal, Alix Cui, Kiyoul Park, Edgar B. Cahoon, and Chi Zhang

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Identification of Climate and Genetic Factors That Control Fat Content and Fatty Acid Composition of Theobroma cacao L. Beans, Guiliana M. Mustiga, Joe Morrissey, Joseph Conrad Stack, Ashley Duval, Stefan Royaert, Johannes Jansen, Carolina Bizzotto, Cristiano Villela-Dias, Linkai Mei, Edgar B. Cahoon, Ed Seguine, Jean Philippe Marelli, and Juan Carlos Motamayor

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Comprehensive Analysis of Aspergillus nidulans PKA Phosphorylome Identifies a Novel Mode of CreA Regulation, Liliane F. C. Ribeiro, Cynthia Chelius, Karthik R. Boppidi, Nisha S. Naik, Simin Hossain, Jessica J. J. Ramsey, Jyothi Kumar, Lucas F. Ribeiro, Marc Ostermeier, Bao Tran, Young Ah Goo, Leandro J. de Assis, Mevlut Ulas, Ozgur Bayram, Gustavo H. Goldman, Stephen Lincoln, Ranjan Srivastava, Steven D. Harris, and Mark R. Marten

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Nature-Guided Synthesis of Advanced Bio-Lubricants, Trevor Romsdahl, Asghar Shirani, Robert E. Minto, Chunyu Zhang, Edgar B. Cahoon, Kent D. Chapman, and Diana Berman

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Two distinct nucleic acid binding surfaces of Cdc5 regulate development, Chao Wang, Mu Li, Guorui Li, Wensheng Zhao, Bin Yu, Junfeng Liu, Jun Yang, and You-Liang Peng

2018

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Single-molecule sequencing and optical mapping yields an improved genome of woodland strawberry (Fragaria vesca) with chromosome-scale contiguity, Patrick P. Edger, Robert VanBuren, Marivi Colle, Thomas J. Poorten, Ching Man Wai, Chad E. Niederhuth, Elizabeth I. Alger, Shujun Ou, Charlotte B. Acharya, Jie Wang, Pete Callow, Michael R. McKain, Jinghua Shi, Chad Collier, Zhiyong Xiong, Jeffrey P. Mower, Janet P. Slovin, Timo Hytonen, Ning Jiang, Kevin L. Childs, and Steven J. Knapp

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GIPC GlcNAc glycosyltransferase, Toshiki Ishikawa, Lin Fang, Emilie A. Rennie, Julien Sechet, Jingwei Yan, Beibei Jing, William Moore, Edgar B. Cahoon, Henrik V. Scheller, Maki Kawai-Yamada, and Jenny C. Mortimer

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Conventional and hyperspectral time-series imaging of maize lines widely used in field trials, Zhikai Liang, Piyush Pandey, Vincent Stoerger, Yuhang Xu, Yumou Qiu, Yufeng Ge, and James C. Schnable

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Development of iFOX-hunting as a functional genomic tool and demonstration of its use to identify early senescence-related genes in the polyploid Brassica napus, Juan Ling, Renjie Li, Chinedu Charles Nwafor, Junluo Cheng, Maoteng Li, Qing Xi, Jian Wu, Lu Gan, Qingyong Yang, Chao Liu, Ming Chen, Yongming Zhou, Edgar B. Cahoon, and Chunyu Zhang

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MAC3A and MAC3B, Two Core Subunits of the MOS4-Associated Complex, Positively Influence miRNA biogenesis, Shengjun Li, Kan Liu, Bangjun Zhou, Mu Li, Shuxin Zhang, Lirong Zeng, Chi Zhang, and Bin Yu

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MAC3A and MAC3B, Two Core Subunits of the MOS4-Associated Complex, Positively Influence miRNA biogenesis, Shengjun Li, Kan Liu, Bangjun Zhou, Mu Li, Shuxin Zhang, Lirong Zeng, Chi Zhang, and Bin Yu

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SMA1, a homolog of the splicing factor Prp28, has a multifaceted role in miRNA biogenesis in Arabidopsis, Shengjun Li, Ran Xu, Aixia Li, Kan Liu, Liqing Gu, Mu Li, Hairui Zhang, Yueying Zhang, Shangshang Zhuang, Quanhui Wang, Gang Gao, Na Li, Chi Zhang, Yunhai Li, and Bin Yu

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Xanthomonas oryzae pv. oryzae TALE proteins recruit OsTFIIAγ1 to compensate for the absence of OsTFIIAγ5 in bacterial blight in rice, Wenxiu Ma, Lifang Zou, Zhiyuan Ji, Xiameng Xu, Zhengyin Xu, YangYang Yang, and James R. Alfano

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Molecular tools enabling pennycress (Thlaspi arvense) as a model plant and oilseed cash cover crop, Michaela McGinn, Winthrop B. Phippen, Ratan Chopra, Sunil Bansal, Brice A. Jarvis, Mary E. Phippen, Kevin M. Dorn, Maliheh Esfahanian, Tara J. Nazarenus, Edgar B. Cahoon, Timothy P. Durrett, M. David Marks, and John C. Sedbrook

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The role of type III effectors from Xanthomonas axonopodis pv. manihotis in virulence and suppression of plant immunity, Cesar Augusto Medina, Paola Andrea Reyes, Cesar Augusto Trujillo, Juan Luis Gonzalez, David Alejandro Bejarano, Nathaly Andrea Montenegro, Jonathan M. Jacobs, Anna Joe, Silvia Restrepo, James R. Alfano, and Adriana Bernal

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Lycophyte plastid genomics: extreme variation in GC, gene and intron content and multiple inversions between a direct and inverted orientation of the rRNA repeat, Jeffrey P. Mower, Peng-Fei Ma, Felix Grewe, Alex Taylor, Todd P. Michael, Robert VanBuren, and Yin-Long Qiu

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Generation and Evaluation of Modified Opaque-2 Popcorn Suggests a Route to Quality Protein Popcorn, Ying Ren, Abou Yobi, Leandra Marshall, Ruthie Angelovici, Oscar Rodriguez, and David R. Holding

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Integrating Phylogenetic and Network Approaches to Study Gene Family Evolution: The Case of the AGAMOUS Family of Floral Genes, Daniel Santana de Carvalho, James C. Schnable, and Ana Maria R. Almeida

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Functional Modeling of Plant Growth Dynamics, Y. Xu, Y. Qiu, and James C. Schnable

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Identification of bottlenecks in the accumulation of cyclic fatty acids in camelina seed oil, Xiao-Hong Yu, Rebecca E. Cahoon, Patrick J. Horn, Hai Shi, Richa R. Prakash, Yuanheng Cai, Maegan Hearney, Kent D. Chapman, Edgar B. Cahoon, Jorg Schwender, and John Shanklin

2017

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Provitamin A biofortification of cassava enhances shelf life but reduces dry matter content of storage roots due to altered carbon partitioning into starch, Getu Beyene, Felix R. Solomon, Raj D. Chauhan, Eliana Gaitán-Solis, Narayanan Narayanan, Jackson Gehan, Dimuth Siritunga, Robin L. Stevens, John Jifon, Joyce Van Eck, Edward Linsler, Malia Gehan, Muhammad Ilyas, Martin Fregene, Richard T. Sayre, Paul Anderson, Nigel Taylor, and Edgar B. Cahoon

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Complete mitochondrial genomes from the ferns Ophioglossum californicum and Psilotum nudum are highly repetitive with the largest organellar introns, Wenhu Guo, Andan Zhu, Weishu Fan, and Jeffrey P. Mower

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Enhancing soybean photosynthetic CO2 assimilation using a cyanobacterial membrane protein, ictB, William T. Hay, Saadia Bihmidine, Nedim Mutlu, Khang Le Hoang, Tala Awada, Donald P. Weeks, Thomas Clemente, and Stephen P. Long

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A Specialized Diacylglycerol Acyltransferase Contributes to the Extreme Medium-Chain Fatty Acid Content of Cuphea Seed Oil, Umidjon Iskandarov, Jillian E. Silva, Hae Jin Kim, Mariette Andersson, Rebecca E. Cahoon, Keithanne Mockaitis, and Edgar B. Cahoon

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Expression of cyanobacterial FBP/SBPase in soybean prevents yield depression under future climate conditions, Iris H. Köhler, Ursula M. Ruiz-Vera, Andy VanLoocke, Michell L. Thomey, Thomas Clemente, Stephen P. Long, Donald R. Ort, and Carl J. Bernacchi

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PLANTS WITH USEFUL TRAITS AND RELATED METHODS, Sally Ann Mackenzie and Roberto De la Rosa Santamaria

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A multidomain enzyme, with glycerol-3-phosphate dehydrogenase and phosphatase activities, is involved in a chloroplastic pathway for glycerol synthesis in Chlamydomonas reinhardtii, Daniela Morales-Sánchez, Yeongho Kim, Ee Leng Terng, Laura Peterson, and Heriberto D. Cerutti

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Towards the development of a sustainable soya bean-based feedstock for aquaculture, Hyunwoo Park, Steven Weier, Fareha Razvi, Pamela A. Peña, Neil A. Sims, Jennica Lowell, Cory Hungate, Karma Kissinger, Gavin Key, Paul Fraser, Jonathan Napier, Edgar B. Cahoon, and Thomas Clemente

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Overexpression of SbMyb60 in Sorghum bicolor impacts both primary and secondary metabolism, Erin D. Scully, Tammy Gries, Nathan A. Palmer, Gautam Sarath, Deanna L. Funnell-Harris, Lisa Baird, Paul Twigg, Javier Seravalli, Thomas E. Clemente, and Scott E. Sattler

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Differentially Regulated Orthologs in Sorghum and the Subgenomes of Maize, Yang Zhang, Daniel W. Ngu, Daniel Santana de Carvalho, Zhikai Liang, Yumou Qiu, Rebecca Roston, and James C. Schnable

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Conventional and unconventional ubiquitination in plant immunity, Bangjun Zhou and Lirong Zeng

2016

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Transcriptome response of cassava leaves under natural shade, Zehong Ding, Yang Zhang, Yi Xiao, Fangfang Liu, Minghui Wang, Xinguang Zhu, Peng Liu, Qi Sun, Wenquan Wang, Ming Peng, Tom Brutnell, and Pinghua Li

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Limited mitogenomic degradation in response to a parasitic lifestyle in Orobanchaceae, Weishu Fan, Andan Zhu, Melisa Kozaczek, Neethu Shah, Natalia Pabón-Mora, Favio González, and Jeffrey P. Mower

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A Bacterial Effector Co-opts Calmodulin to Target the Plant Microtubule Network, Ming Guo, Panya Kim, Guangyong Li, Christian Elowsky, and James R. Alfano

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Ginkgo and Welwitschia mitogenomes reveal extreme contrasts in gymnosperm mitochondrial evolution, Wenhu Guo, Felix Grewe, Weishu Fan, Gregory J. Young, Volker Knoop, Jeffrey D. Palmer, and Jeffrey P. Mower