2021
The Potential Use of Radiomics with Pre-Radiation Therapy MR Imaging in Predicting Risk of Pseudoprogression in Glioblastoma Patients, Michael J. Baine, Justin Burr, Qian Du, Chi Zhang, Xiaoying Liang, Luke Krajewski, Laura Zima, Gerard Rux, Chi Zhang, and Dandan Zheng
Sister species diverge in modality-specific courtship signal form and function, Eileen Hebets, Mitch Bern, Rowan H. McGinley, Andy Roberts, Arik Kershenbaum, James Starrett, and Jason E. Bond
Seed Rain–Successional Feedbacks in Wet Tropical Forests, Nohemi Huanca Nuñez, Robin L. Chazdon, and Sabrina E. Russo
Body mass-related changes in mammal community assembly patterns during the late Quaternary of North America, Silvia Pineda-Munoz, Advait M. Jukar, Anikó B. Toth, Danielle Fraser, Andrew Du, W. Andrew Barr, Kathryn L. Amatangelo, Meghan A. Balk, Anna K. Behrensmeyer, Jessica Blois, Matt Davis, Jussi T. Eronen, Nicholas J. Gotelli, Cindy Looy, Joshua H. Miller, Alexandria B. Shupinski, Laura C. Soul, Amelia Villaseñor, Scott Wing, and S. Kathleen Lyons
The interspecific growth–mortality trade-off is not a general framework for tropical forest community structure, Sabrina E. Russo, Sean M. McMahon, Matteo Detto, Glenn Ledder, S. Joseph Wright, Richard S. Condit, Stuart J. Davies, Peter S. Ashton, Sarayudh Bunyavejchewin, Chia-Hao Chang-Yang, Sisira Ediriweera, Corneille E.N. Ewango, Christine Fletcher, Robin B. Foster, C.V. Savi Gunatilleke, I.A.U. Nimal Gunatilleke, Terese Hart, Chang-Fu Hseih, Stephen P. Hubbell, Akira Itoh, Abdul Rahman Kassim, Yao Tze Leong, Yi Ching Lin, Jean-Remy Makana, Mohizah Bt. Mohamad, Perry Ong, Anna Sugiyama, I-Fang Sun, Sylvester Tan, Jill Thompson, Takuo Yamakura, Sandra L. Yap, and Jess K. Zimmerman
The influence of juvenile dinosaurs on community structure and diversity, Katlin Schroeder, S. Kathleen Lyons, and Felisa A. Smith
Associations between Statin/Omega3 Usage and MRI-Based Radiomics Signatures in Prostate Cancer, Yu Shi, Ethan Wahle, Qian Du, Luke Krajewski, Xiaoying Liang, Sumin Zhou, Chi Zhang, Michael J. Baine, and D Zheng
2020
Adaptations of Interferon Regulatory Factor 3 with Transition from Terrestrial to Aquatic Life, Monica Angeletti, Wan-Ling Nicole Hsu, Nashaat Majo, Hideaki Moriyama, Etsuko Moriyama, and Luwen Zhang
Resources for Teaching and Assessing the Vision and Change Biology Core Concepts, Janet L. Branchaw, Pamela A. Pape-Lindstrom, Kimberly D. Tanner, Sarah A. Bissonnette, Tawnya L. Cary, Brian A. Couch, Alison J. Crowe, Jenny K. Knight, Katharine Semsar, Julia I. Smith, Michelle K. Smith, Mindi M. Summers, Caroline J. Wienhold, Christian D. Wright, and Sara E. Brownell
Multiple-true-false questions reveal more thoroughly the complexity of student thinking than multiple-choice questions: a Bayesian item response model comparison, Chad Brassil and Brian Couch
PRODUCTION OF ISOPRENE BY METHANE - PRODUCING ARCHAEA, Nicole Roswitha Buan Murphy, Karrie A. Weber, Jared T. Aldridge, and Robert Carr
Mitochondrial localization of Dictyostelium discoideum dUTPase mediated by its N‑terminus, Catherine P. Chia, Noriko Inoguchi, Kyle C. Varon, Bradley M. Barholomai, and Hideaki Moriyama
Predator-Dependent Functional Responses Alter the Coexistence and Indirect Effects among Prey that Share a Predator, Kyle E. Coblentz and John P. DeLong
Temperature alters the shape of predator–prey cycles through effects on underlying mechanisms, John P. DeLong and Shelby Lyon
Benefits of a College STEM Faculty Development Initiative: Instructors Report Increased and Sustained Implementation of Research-Based Instructional Strategies, Mary F. Durham, Oriana R. Aragón, Meghan E. Bathgate, Aiyanan Bobrownicki, Andrew J. Cavanagh, Xinnian Chen, William M. Trochim, Jonathan K. Waterhouse, Maek J. Graham, and Brian Couch
Mammal community structure through the Paleocene-Eocene Thermal Maximum, Danielle Fraser and S. Kathleen Lyons
Book Review: Nature’s Giants: The Biology and Evolution of the World’s Largest Lifeforms., William Gearty
Divergent density feedback control of migratory predator recovery following sex-biased perturbations, Daisuke Goto, Martin J. Hamel, Mark A. Pegg, Jeremy J. Hammen, Matthew L. Rugg, and Valery E. Forbes
A high-throughput method to quantify feeding rates in aquatic organisms: A case study with Daphnia, Jessica L. Hite, Alaina C. Pfenning-Butterworth, Rachel E. Vetter, and Clayton E. Cressler
The Role of Nestling Acoustic Experience in Song Discrimination in a Sparrow, Emily J. Hudson, Nicole Creanza, and Daizaburo Shizuka
Presence of fruits decreases probability of retaining flowers in a sequentially flowering plant, Shivani Jadeja and Brigitte Tenhumberg
Innovative teaching knowledge stays with users, A. Kelly Lane, Jacob D. McAlpin, Brittnee Earl, Stephanie Feola, Jennifer E. Lewis, Karl Mertens, Susan E. Shadle, John Svoretz, John P. Ziker, Brian A. Couch, Luanna B. Prevost, and Marilyne Stains
Towards understanding factors influencing the benefit of diversity in predator communities for prey suppression, Amanda N. Laubmeir, Richard Rebarber, and Brigitte Tenhumberg
Local control of resource allocation is sufficient to model optimal dynamics in syntrophic systems, Glenn Ledder, Sabrina E. Russo, Erik B. Muller, Angela Peace, and Roger M. Nisbet
Trophic cascades alter eco-evolutionary dynamics and body size evolution, Thomas M. Luhring and John DeLong
Extreme offspring ornamentation in American coots is favored by selection within families, not benefits to conspecific brood parasites, Bruce E. Lyon and Daizaburo Shizuka
Invited Commentaries on Shizuka & Johnson 2020, & Response from the Authors, Adriana A. Maldonado-Chaparro, Damien R. Farine, Amiyaal Ilany, Orr Spiegel, Noa Pinter-Wollman, Ipek G. Kulahci, Eric Vander Wal, Quinn M.R. Webber, Daniel I. Rudenstein, Daizaburo Shizuka, and Allison E. Johnson
An ortholog of the Vasa intronic gene is required for small RNA-mediated translation repression in Chlamydomonas reinhardtii, Xinrong Ma, Fadia Ibrahim, Eun-Jeong Kim, Scott Shaver, James Becker, Fareha Razvi, Ronald L. Cerny, and Heriberto D. Cerutti
The Natural Selection Game: Incorporating Active Learning in Evolution Curricula for General Biology, Shabnam Mohammadi, Nicholas M. Kiriazis, and Lorin A. Neuman-Lee
Effects of Lethal Bronzing Disease, Palm Height, and Temperature on Abundance and Monitoring of Haplaxius crudus, De-Fen Mou, Chih-Chung Lee, Philip G. Hahn, Noemi Soto, Alessandra R. Humphries, Ericka E. Helmick, and Brian W. Bahder
Sex and suicide: The curious case of Toll-like receptors, Paulo A. Navarro-Costa, Antoine Molaro, Chandra S. Misra, Colin D. Meiklejohn, and Peter J. Ellis
Outcome markers of ART-treated HIV+ patients with early stage Kaposi’s sarcoma, Owen Ngalamika, For Yue Tso, Salum Lidenge, Sody Munsaka, Danielle Shea, Charles Wood, and John West
Radiomics-Based Outcome Prediction for Pancreatic Cancer Following Stereotactic Body Radiotherapy, Elsa Parr, Qian Du, Chi Zhang, Chi Lin, Ahsan Kamal, Josiah McAlister, Xiaoying Liang, Kyle Bavitz, Gerard Rux, Michael Hollingsworth, Michael Baine, and Dandan Zheng
Longer Ubiquinone Side Chains Contribute to Enhanced Farnesol Resistance in Yeasts, Ruvini U. Pathirana, Cory Boone, and Kenneth Nickerson
ENGINEERED CLOSTRIDIUM BOTULINUM TOXIN ADAPTED TO DELIVER MOLECULES INTO SELECTED CELLS, Benjamin J. Pavlik, Paul H. Blum, and Kevin Van Cott
The Globin Gene Family in Arthropods: Evolution and Functional Diversity, Andreas Prothmann, Federico G. Hoffmann, Juan C. Opazo, Peter Herbener, Jay F. Storz, Thorsten Burmester, and Thomas Hankeln
Identification and characterization of differentially expressed genes in Caenorhabditis elegans in response to pathogenic and nonpathogenic Stenotrophomonas maltophilia, Leah J. Radeke and Michael A. Herman
Post‐dispersal factors influence recruitment patterns but do not override the importance of seed limitation in populations of a native thistle, Tatyana A. Rand, Natalie M. West, F. Leland Russell, and Svata M. Louda
Phenotypic divergence in two sibling species of shorebird: Common Snipe and Wilson’s Snipe (Charadriiformes: Scolopacidae), Tiago M. Rodrigues, Edward H. Miller, Sergei V. Drovetski, Robert M. Zink, Jon Fjeldså, and David Gonçalves
Ectomycorrhizal fungi drive positive phylogenetic plant–soil feedbacks in a regionally dominant tropical plant family, R. Max Segnitz, Sabrina E. Russo, Stuart J. Davies, and Kabir G. Peay
How demographic processes shape animal social networks, Daizaburo Shizuka and Allison E. Johnson
Tolerance of Novel Toxins through Generalized Mechanisms: Simulating Gradual Host Shifts of ButterfliesKristin, Kristin L. Sikkink, Reilly Hostager, Megan E. Kobiela, Nathan Fremling, Katherine Johnston, Amod Zambre, and Emilie C. Snell-Rood
Juvenile rank acquisition is associated with fitness independent of adult rank, Eli D. Strauss, Daizaburo Shizuka, and Kay E. Holekamp
Functional responses are maximized at intermediate temperatures, Stella F. Uiterwaal and John DeLong
Trade-offs between morphology and thermal niches mediate adaptation in response to competing selective pressures, Stella F. Uiterwaal, Ian T. Lagerstrom, Thomas M. Luhring, Miranda E. Salsbery, and John P. DeLong
Trade-Offs Between Morphology and Thermal Niches Mediate Adaptation in Response to Competing Selective Pressures, Stella F. Uiterwaal, Ian T. Lagerstrom, Thomas M. Luhring, Miranda E. Salsbery, and John P. DeLong
Evolutionary Origin and Genetic Diversity of Ring‐necked Pheasants in the Upper Midwest United States, Hernán Vázquez-Miranda, Magdalena Jean Olson, and Robert M. Zink
A role for triglyceride lipase brummer in the regulation of sex differences in Drosophila fat storage and breakdown, Lianna W. Wat, Chien Chao, Rachael Bartlett, Justin L. Buchanan, Jason W. Millington, Hui Ju Chih, Zahid S. Chowdhury, Puja Biswas, Vivian Huang, Leah J. Shin, Lin Chuan Wang, Marie-Pierre L. Gauthier, Maria C. Barone, Kristi L. Montooth, Michael A. Welte, and Elizabeth J. Rideout
Lithological constraints on resource economies shape the mycorrhizal composition of a Bornean rain forest, Monique Weemstra, Kabir G. Peay, Stuart J. Davies, Mohizah Mohamad, Akira Itoh, Sylvester Tan, and Sabrina E. Russo
Mitochondrial DNA Repair in an Arabidopsis thaliana Uracil N-Glycosylase Mutant, Emily L. Wynn, Emma Purfeerst, and Alan Christensen
2019
Enzyme kinetics of dUTPase from the planarian Dugesia ryukyuensis, Shahanoor Alam and Hideaki Moriyama
Testing the competition-colonization trade-off and its correlations with functional trait variations among subtropical tree species, Yue Bin, Guojun Lin, Sabrina E. Russo, Zhongliang Huang, Yong Shen, Honglin Cao, Juyu Lian, and Wanhui Ye
Gravid Tetragnathid Spiders Show an Increased Functional Response, Mary E. Boswell and John P. DeLong
Large expert-curated database for benchmarking document similarity detection in biomedical literature search, Peter Brown, RELISH Consortium, Yaoqi Zhou, Chi Zhang, and Tian Gao
Influenza H1 Mosaic Hemagglutinin Vaccine Induces Broad Immunity and Protection in Mice, Brigette N. Corder, Brianna L. Bullard, Jennifer L. DeBeauchamp, Natalia A. Ilyushina, Richard J. Webby, and Eric A. Weaver
Ecological pleiotropy and indirect effects alter the potential for evolutionary rescue, John P. DeLong and Jonathan Belmaker
Life history traits and functional processes generate multiple pathways to ecological stability, John P. DeLong, Torrance C. Hanley, Jean P. Gibert, Linda M. Puth, and David M. Post
Radiomic feature stability across 4D respiratory phases and its impact on lung tumor prognosis prediction, Qian Du, Michael Baine, Kyle Bavitz, Josiah McAllister, Xiaoying Liang, Hongfeng Yu, Jeffrey Ryckman, Lina Yu, Hengle Jiang, Sumin Zhou, Sumin Zhou, Chi Zhang, and Dandan Zheng
Morphological changes in American kestrels (Falco sparverius) at continental migration sites, Teresa E. Ely, Christopher W. Briggs, Shawn E. Hawks, Gregory S. Kaltenecker, David L. Evans, Frank J. Nicoletti, Jean-François Therrien, Olin Allen, and John DeLong
A self-marker-like protein governs hemocyte allorecognition in Halocynthia roretzi, Masaki Ema, Taizo Okada, Miki Takahashi, Masato Uchiyama, Hideo Kubo, Hideaki Moriyama, Hitoshi Miyakawa, and Midori Matsumoto
Opportunities for behavioral rescue under rapid environmental change, Samuel B. Fey, David A. Vasseur, Karla Alujević, Kristy J. Kroeker, Michael L. Logan, Mary I. O'Connor, Volker H.W. Rudolf, John DeLong, Scott Peacor, Rebecca L. Selden, A Sih, and Susana Clusella‐Trullas
Microbial Community of Saline, Alkaline Lakes in the Nebraska Sandhills Based on 16S rRNA Gene Amplicon Sequence Data, Nicole A. Fiore, David D. Dunigan, Julie J. Shaffer, Ryan Roberts, Sanjay Antony-Babu, Bradley A. Plantz, Kenneth W. Nickerson, Andrew K. Benson, and Karrie A. Weber
Modeling Genomes to Phenomes to Populations in a Changing Climate: The Need for Collaborative Networks, Nika Galic, Allyson G. Hindle, John P. DeLong, Karen Watanabe, Valery Forbes, and C. Loren Buck
Student Understanding of DNA Structure–Function Relationships Improves from Using 3D Learning Modules with Dynamic 3D Printed Models, Michelle E. Howell, Christine S. Booth, Sharmin M. Sikich, Tomáš Helikar, Rebecca Roston, Brain A. Couch, and Karin van Dijk
Investigating how faculty social networks and peer influence relate to knowledge and use of evidence-based teaching practices, A.K. Lane, John Skvoretz, J.P. Ziker, B. A. Couch, B. Earl, J.E. Lewis, J.D. McAlpin, L.B. Prevost, S.E. Shadle, and M. Stains
Investigating how faculty social networks and peer influence relate to knowledge and use of evidence-based teaching practices, A. K. Lane, J. Skvoretz, J. P. Ziker, B. A. Couch, B. Earl, J. E. Lewis, J. D. McAlpin, L. B. Prevost, S. E. Shadle, and M. Stains
Phenotypically Plastic Responses to Predation Risk Are Temperature Dependent, Thomas M. Luhring, Janna M. Vavra, Clayton E. Cressler, and John DeLong
Metabolism Underlies Physiological Homeostasis in Drosophila, Omera B. Matoo, Cole R. Julick, and Kristi Montooth
“What Will I Experience in My College STEM Courses?” An Investigation of Student Predictions about Instructional Practices in Introductory Courses, Clara L. Meaders, Emma S. Toth, A. K. Lane, J. Kenny Shuman, Brian Couch, Marilyne Stains, MacKenzie R. Stetzer, Erin Vinson, and Michelle K. Smith
Physiological and genomic evidence that selection on the transcription factor Epas1 has altered cardiovascular function in highaltitude deer mice, Rena M. Schweizer, Jonathan P. Velotta, Catherine M. Ivy, Matthew R. Jones, Sarah M. Muir, Gideon S. Bradburd, Jay F. Storz, Graham R. Scott, and Zachary A. Cheviron
The accelerating influence of humans on mammalian macroecological patterns over the late Quaternary, Felisa A. Smith, Rosemary E. Elliott Smith, S. Kathleen Lyons, Jonathan L. Payne, and Amelia Villaseñor
Tools for Change: Measuring Student Conceptual Understanding Across Undergraduate Biology Programs Using Bio-MAPS Assessments, Michelle K. Smith, Sara E. Brownell, Alison J. Crowe, N. G. Holmes, Jennifer K. Knight, Katharine Semsar, Mindi M. Summers, Cole Walsh, Christian D. Wright, and Brian A. Couch
Life Ascending: Mechanism and Process in Physiological Adaptation to High-Altitude Hypoxia, Jay F. Storz and Graham R. Scott
Changes in the diet and body size of a small herbivorous mammal (hispid cotton rat, Sigmodon hispidus) following the late Pleistocene megafauna extinction, Catalina P. Tomé, Emma A. Elliott Smith, S. Kathleen Lyons, Seth D. Newsome, and Felisa A. Smith
Reorganization of surviving mammal communities after the end-Pleistocene megafaunal extinction, Anikó B. Tóth, S. Kathleen Lyons, W. Andrew Barr, Anna K. Behrensmeyer, Jessica L. Blois, René Bobe, Matt Davis, Andrew Du, Jussi T. Eronen, J. Tyler Faith, Danielle Fraser, Nicholas J. Gotelli, Gary R. Graves, Advait M. Jukar, Joshua H. Miller, Silvia Pineda-Munoz, Laura C. Soul, Amelia Villaseñor, and John Alroy
Arena Size Modulates Functional Responses via Behavioral Mechanisms, Stella F. Uiterwaal, Anthony I. Dell, and John P. DeLong
Body Condition Helps to Explain Metabolic Rate Variation in Wolf Spiders, Stella F. Uiterwaal and John P. DeLong
Can VEGFC Form Turing Patterns in the Zebrafish Embyro?, Kenneth Y. Wertheim and Tina Roose
2018
CD32 is expressed on cells with transcriptionally active HIV but does not enrich for HIV DNA in resting T cells, Mohamed Abdel-Mohsen, Leticia Kuri-Cervantes, Judith Grau-Exposito, Adam M. Spivak, Racheal A. Nell, Costin Tomescu, Surya Kumari Vadrevu, Leila B. Giron, Carla Serra-Peinado, Meritxell Genesca, Josep Castellvi, Guoxin Wu, Perla M. Del Rio Estrada, Mauricio Gonzalez-Navarro, Kenneth Lynn, Collin T. King, Sai Vemula, Kara Cox, Yanmin Wan, Qingsheng Li, Karam Mounzer, Jay Kostman, Ian Frank, Mirko Paiardini, Daria Hazuda, Gustavo Reyes-Teran, Douglas Richman, Bonnie Howell, Pablo Tebas, Javier Martinez-Picado, Vicente Planelles, Maria J. Buzon, Michael R. Betts, and Luis J. Montaner
What Types of instructional shifts Do students experience? investigating active learning in science, Technology, engineering, and Math classes across Key Transition Points from Middle school to the University level, Kenneth Akiha, Emilie Brigham, Brain A. Couch, Justin Lewin, Marilyne Stains, MacKenzie R. Stetzer, Erin L. Vinson, and Michelle K. Smith
Males and females evolve riskier traits in populations with eavesdropping parasitoids, Oliver M. Beckers and William E. Wagner
RNAi Doxxes Segregation Distorters on the X, Justin P. Blumenstiel and Colin D. Meiklejohn
Mitochondrial Dysfunction and Infection Generate Immunity–Fecundity Tradeoffs in Drosophila, Justin L. Buchanan, Colin D. Meiklejohn, and Kristi L. Montooth
Fueling Defense: Effects of Resources on the Ecology and Evolution of Tolerance to Parasite Infection, Sarah A. Budischak and Clayton E. Cressler
Feeding immunity: Physiological and Behavioral responses to infection and resource limitation, Sarah A. Budischak, Christina B. Hansen, Quentin Caudron, Romain Garnier, Tyler R. Kartzinel, István Pelczer, Clayton E. Cressler, Anieke van Leeuwen, and Andrea L. Graham
Multiple–True–False Questions Reveal the Limits of the Multiple–Choice Format for Detecting Students with Incomplete Understandings, Brian Couch, Joanna K. Hubbard, and Chad Brassil
Student, instructor, and observer agreement regarding frequencies of scientific teaching practices using the Measurement Instrument for Scientific Teaching-Observable (MISTO), Mary F. Durham, Jennifer Knight, Emily K. Bremers, Jameson D. DeFreece, Alex R. Paine, and Brian A. Couch
Energetic tradeoffs control the size distribution of aquatic mammals, William Gearty, Craig R. McClain, and Jonathan Payne
A Probable Case of Incipient Speciation in Schizocosa Wolf Spiders Driven by Allochrony, Habitat Use, and Female Mate Choice, R. Tucker Gilman, Kasey Fowler-Finn, and Eileen A. Hebets
Evolutionary origins of vocal mimicry in songbirds, Maria Goller and Daizaburo Shizuka
Cross-ecosystem effects of terrestrial predators link treefrogs, zooplankton, and aquatic primary production, Jessica L. Hite, Myra C. Hughey, Karen M. Warkentin, and James R. Vonesh
Energy demand and the context-dependent effects of genetic interactions underlying metabolism, Luke A. Hoekstra, Cole R. Julick, Katelyn M. Mika, and Kristi L. Montooth
Gene Turnover and Diversification of the α- and β- Globin Gene Families in Sauropsid Vertebrates, Federico G. Hoffmann, Michael W. Vandewege, Jay F. Storz, and Juan C. Opazo
Presence of fruits decreases probability of retaining flowers in a sequentially flowering plant, Shivani Jadeja and Brigitte Tenhumberg
Song recognition and heterospecific associations between 2 fairy-wren species (Maluridae), Allison E. Johnson, Christina Masco, and Stephen Pruett-Jones
Reproductive promiscuity in the variegated fairy-wren: An alternative reproductive strategy in the absence of helpers?, Allison E. Johnson and Stephen Pruett-Jones
Influenza D virus M2 protein exhibits ion channel activity in Xenopus laevis oocytes, Evan Kesinger, Jianing Liu, Aaron Jensen, Catherine P. Chia, Andrew Demers, and Hideaki Moriyama
Molecular machinery of auxin synthesis,secretion, and perception in the unicellular chlorophyte alga Chlorella sorokiniana UTEX 1230, Maya Khasin, Rebecca E. Cahoon, Kenneth Nickerson, and Wayne R. Riekhof
Change in dominance determines herbivore effects on plant biodiversity, Sally E. Koerner, Johannes Knops, Dustin J. Strong, and 80 more co-authors
Synbiotics for Improved Human Health: Recent Developments, Challenges, and Opportunities, Janina A. Krumbeck, Jens Walter, and Robert W. Hutkins