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2021

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The Potential Use of Radiomics with Pre-Radiation Therapy MR Imaging in Predicting Risk of Pseudoprogression in Glioblastoma Patients, Michael J. Baine, Justin Burr, Qian Du, Chi Zhang, Xiaoying Liang, Luke Krajewski, Laura Zima, Gerard Rux, Chi Zhang, and Dandan Zheng

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Sister species diverge in modality-specific courtship signal form and function, Eileen Hebets, Mitch Bern, Rowan H. McGinley, Andy Roberts, Arik Kershenbaum, James Starrett, and Jason E. Bond

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Seed Rain–Successional Feedbacks in Wet Tropical Forests, Nohemi Huanca Nuñez, Robin L. Chazdon, and Sabrina E. Russo

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Body mass-related changes in mammal community assembly patterns during the late Quaternary of North America, Silvia Pineda-Munoz, Advait M. Jukar, Anikó B. Toth, Danielle Fraser, Andrew Du, W. Andrew Barr, Kathryn L. Amatangelo, Meghan A. Balk, Anna K. Behrensmeyer, Jessica Blois, Matt Davis, Jussi T. Eronen, Nicholas J. Gotelli, Cindy Looy, Joshua H. Miller, Alexandria B. Shupinski, Laura C. Soul, Amelia Villaseñor, Scott Wing, and S. Kathleen Lyons

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The interspecific growth–mortality trade-off is not a general framework for tropical forest community structure, Sabrina E. Russo, Sean M. McMahon, Matteo Detto, Glenn Ledder, S. Joseph Wright, Richard S. Condit, Stuart J. Davies, Peter S. Ashton, Sarayudh Bunyavejchewin, Chia-Hao Chang-Yang, Sisira Ediriweera, Corneille E.N. Ewango, Christine Fletcher, Robin B. Foster, C.V. Savi Gunatilleke, I.A.U. Nimal Gunatilleke, Terese Hart, Chang-Fu Hseih, Stephen P. Hubbell, Akira Itoh, Abdul Rahman Kassim, Yao Tze Leong, Yi Ching Lin, Jean-Remy Makana, Mohizah Bt. Mohamad, Perry Ong, Anna Sugiyama, I-Fang Sun, Sylvester Tan, Jill Thompson, Takuo Yamakura, Sandra L. Yap, and Jess K. Zimmerman

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The influence of juvenile dinosaurs on community structure and diversity, Katlin Schroeder, S. Kathleen Lyons, and Felisa A. Smith

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Associations between Statin/Omega3 Usage and MRI-Based Radiomics Signatures in Prostate Cancer, Yu Shi, Ethan Wahle, Qian Du, Luke Krajewski, Xiaoying Liang, Sumin Zhou, Chi Zhang, Michael J. Baine, and D Zheng

2020

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Adaptations of Interferon Regulatory Factor 3 with Transition from Terrestrial to Aquatic Life, Monica Angeletti, Wan-Ling Nicole Hsu, Nashaat Majo, Hideaki Moriyama, Etsuko Moriyama, and Luwen Zhang

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Resources for Teaching and Assessing the Vision and Change Biology Core Concepts, Janet L. Branchaw, Pamela A. Pape-Lindstrom, Kimberly D. Tanner, Sarah A. Bissonnette, Tawnya L. Cary, Brian A. Couch, Alison J. Crowe, Jenny K. Knight, Katharine Semsar, Julia I. Smith, Michelle K. Smith, Mindi M. Summers, Caroline J. Wienhold, Christian D. Wright, and Sara E. Brownell

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Multiple-true-false questions reveal more thoroughly the complexity of student thinking than multiple-choice questions: a Bayesian item response model comparison, Chad Brassil and Brian Couch

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PRODUCTION OF ISOPRENE BY METHANE - PRODUCING ARCHAEA, Nicole Roswitha Buan Murphy, Karrie A. Weber, Jared T. Aldridge, and Robert Carr

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Mitochondrial localization of Dictyostelium discoideum dUTPase mediated by its N‑terminus, Catherine P. Chia, Noriko Inoguchi, Kyle C. Varon, Bradley M. Barholomai, and Hideaki Moriyama

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Predator-Dependent Functional Responses Alter the Coexistence and Indirect Effects among Prey that Share a Predator, Kyle E. Coblentz and John P. DeLong

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Temperature alters the shape of predator–prey cycles through effects on underlying mechanisms, John P. DeLong and Shelby Lyon

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Benefits of a College STEM Faculty Development Initiative: Instructors Report Increased and Sustained Implementation of Research-Based Instructional Strategies, Mary F. Durham, Oriana R. Aragón, Meghan E. Bathgate, Aiyanan Bobrownicki, Andrew J. Cavanagh, Xinnian Chen, William M. Trochim, Jonathan K. Waterhouse, Maek J. Graham, and Brian Couch

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Mammal community structure through the Paleocene-Eocene Thermal Maximum, Danielle Fraser and S. Kathleen Lyons

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Book Review: Nature’s Giants: The Biology and Evolution of the World’s Largest Lifeforms., William Gearty

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Divergent density feedback control of migratory predator recovery following sex-biased perturbations, Daisuke Goto, Martin J. Hamel, Mark A. Pegg, Jeremy J. Hammen, Matthew L. Rugg, and Valery E. Forbes

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A high-throughput method to quantify feeding rates in aquatic organisms: A case study with Daphnia, Jessica L. Hite, Alaina C. Pfenning-Butterworth, Rachel E. Vetter, and Clayton E. Cressler

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The Role of Nestling Acoustic Experience in Song Discrimination in a Sparrow, Emily J. Hudson, Nicole Creanza, and Daizaburo Shizuka

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Presence of fruits decreases probability of retaining flowers in a sequentially flowering plant, Shivani Jadeja and Brigitte Tenhumberg

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Innovative teaching knowledge stays with users, A. Kelly Lane, Jacob D. McAlpin, Brittnee Earl, Stephanie Feola, Jennifer E. Lewis, Karl Mertens, Susan E. Shadle, John Svoretz, John P. Ziker, Brian A. Couch, Luanna B. Prevost, and Marilyne Stains

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Towards understanding factors influencing the benefit of diversity in predator communities for prey suppression, Amanda N. Laubmeir, Richard Rebarber, and Brigitte Tenhumberg

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Local control of resource allocation is sufficient to model optimal dynamics in syntrophic systems, Glenn Ledder, Sabrina E. Russo, Erik B. Muller, Angela Peace, and Roger M. Nisbet

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Trophic cascades alter eco-evolutionary dynamics and body size evolution, Thomas M. Luhring and John DeLong

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Extreme offspring ornamentation in American coots is favored by selection within families, not benefits to conspecific brood parasites, Bruce E. Lyon and Daizaburo Shizuka

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An ortholog of the Vasa intronic gene is required for small RNA-mediated translation repression in Chlamydomonas reinhardtii, Xinrong Ma, Fadia Ibrahim, Eun-Jeong Kim, Scott Shaver, James Becker, Fareha Razvi, Ronald L. Cerny, and Heriberto D. Cerutti

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The Natural Selection Game: Incorporating Active Learning in Evolution Curricula for General Biology, Shabnam Mohammadi, Nicholas M. Kiriazis, and Lorin A. Neuman-Lee

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Effects of Lethal Bronzing Disease, Palm Height, and Temperature on Abundance and Monitoring of Haplaxius crudus, De-Fen Mou, Chih-Chung Lee, Philip G. Hahn, Noemi Soto, Alessandra R. Humphries, Ericka E. Helmick, and Brian W. Bahder

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Sex and suicide: The curious case of Toll-like receptors, Paulo A. Navarro-Costa, Antoine Molaro, Chandra S. Misra, Colin D. Meiklejohn, and Peter J. Ellis

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Outcome markers of ART-treated HIV+ patients with early stage Kaposi’s sarcoma, Owen Ngalamika, For Yue Tso, Salum Lidenge, Sody Munsaka, Danielle Shea, Charles Wood, and John West

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Radiomics-Based Outcome Prediction for Pancreatic Cancer Following Stereotactic Body Radiotherapy, Elsa Parr, Qian Du, Chi Zhang, Chi Lin, Ahsan Kamal, Josiah McAlister, Xiaoying Liang, Kyle Bavitz, Gerard Rux, Michael Hollingsworth, Michael Baine, and Dandan Zheng

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Longer Ubiquinone Side Chains Contribute to Enhanced Farnesol Resistance in Yeasts, Ruvini U. Pathirana, Cory Boone, and Kenneth Nickerson

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ENGINEERED CLOSTRIDIUM BOTULINUM TOXIN ADAPTED TO DELIVER MOLECULES INTO SELECTED CELLS, Benjamin J. Pavlik, Paul H. Blum, and Kevin Van Cott

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The Globin Gene Family in Arthropods: Evolution and Functional Diversity, Andreas Prothmann, Federico G. Hoffmann, Juan C. Opazo, Peter Herbener, Jay F. Storz, Thorsten Burmester, and Thomas Hankeln

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Identification and characterization of differentially expressed genes in Caenorhabditis elegans in response to pathogenic and nonpathogenic Stenotrophomonas maltophilia, Leah J. Radeke and Michael A. Herman

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Post‐dispersal factors influence recruitment patterns but do not override the importance of seed limitation in populations of a native thistle, Tatyana A. Rand, Natalie M. West, F. Leland Russell, and Svata M. Louda

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Phenotypic divergence in two sibling species of shorebird: Common Snipe and Wilson’s Snipe (Charadriiformes: Scolopacidae), Tiago M. Rodrigues, Edward H. Miller, Sergei V. Drovetski, Robert M. Zink, Jon Fjeldså, and David Gonçalves

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Ectomycorrhizal fungi drive positive phylogenetic plant–soil feedbacks in a regionally dominant tropical plant family, R. Max Segnitz, Sabrina E. Russo, Stuart J. Davies, and Kabir G. Peay

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Tolerance of Novel Toxins through Generalized Mechanisms: Simulating Gradual Host Shifts of ButterfliesKristin, Kristin L. Sikkink, Reilly Hostager, Megan E. Kobiela, Nathan Fremling, Katherine Johnston, Amod Zambre, and Emilie C. Snell-Rood

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Juvenile rank acquisition is associated with fitness independent of adult rank, Eli D. Strauss, Daizaburo Shizuka, and Kay E. Holekamp

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Functional responses are maximized at intermediate temperatures, Stella F. Uiterwaal and John DeLong

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Trade-offs between morphology and thermal niches mediate adaptation in response to competing selective pressures, Stella F. Uiterwaal, Ian T. Lagerstrom, Thomas M. Luhring, Miranda E. Salsbery, and John P. DeLong

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Trade-Offs Between Morphology and Thermal Niches Mediate Adaptation in Response to Competing Selective Pressures, Stella F. Uiterwaal, Ian T. Lagerstrom, Thomas M. Luhring, Miranda E. Salsbery, and John P. DeLong

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A role for triglyceride lipase brummer in the regulation of sex differences in Drosophila fat storage and breakdown, Lianna W. Wat, Chien Chao, Rachael Bartlett, Justin L. Buchanan, Jason W. Millington, Hui Ju Chih, Zahid S. Chowdhury, Puja Biswas, Vivian Huang, Leah J. Shin, Lin Chuan Wang, Marie-Pierre L. Gauthier, Maria C. Barone, Kristi L. Montooth, Michael A. Welte, and Elizabeth J. Rideout

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Lithological constraints on resource economies shape the mycorrhizal composition of a Bornean rain forest, Monique Weemstra, Kabir G. Peay, Stuart J. Davies, Mohizah Mohamad, Akira Itoh, Sylvester Tan, and Sabrina E. Russo

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Mitochondrial DNA Repair in an Arabidopsis thaliana Uracil N-Glycosylase Mutant, Emily L. Wynn, Emma Purfeerst, and Alan Christensen

2019

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Enzyme kinetics of dUTPase from the planarian Dugesia ryukyuensis, Shahanoor Alam and Hideaki Moriyama

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Testing the competition-colonization trade-off and its correlations with functional trait variations among subtropical tree species, Yue Bin, Guojun Lin, Sabrina E. Russo, Zhongliang Huang, Yong Shen, Honglin Cao, Juyu Lian, and Wanhui Ye

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Gravid Tetragnathid Spiders Show an Increased Functional Response, Mary E. Boswell and John P. DeLong

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Influenza H1 Mosaic Hemagglutinin Vaccine Induces Broad Immunity and Protection in Mice, Brigette N. Corder, Brianna L. Bullard, Jennifer L. DeBeauchamp, Natalia A. Ilyushina, Richard J. Webby, and Eric A. Weaver

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Ecological pleiotropy and indirect effects alter the potential for evolutionary rescue, John P. DeLong and Jonathan Belmaker

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Life history traits and functional processes generate multiple pathways to ecological stability, John P. DeLong, Torrance C. Hanley, Jean P. Gibert, Linda M. Puth, and David M. Post

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Radiomic feature stability across 4D respiratory phases and its impact on lung tumor prognosis prediction, Qian Du, Michael Baine, Kyle Bavitz, Josiah McAllister, Xiaoying Liang, Hongfeng Yu, Jeffrey Ryckman, Lina Yu, Hengle Jiang, Sumin Zhou, Sumin Zhou, Chi Zhang, and Dandan Zheng

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Morphological changes in American kestrels (Falco sparverius) at continental migration sites, Teresa E. Ely, Christopher W. Briggs, Shawn E. Hawks, Gregory S. Kaltenecker, David L. Evans, Frank J. Nicoletti, Jean-François Therrien, Olin Allen, and John DeLong

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A self-marker-like protein governs hemocyte allorecognition in Halocynthia roretzi, Masaki Ema, Taizo Okada, Miki Takahashi, Masato Uchiyama, Hideo Kubo, Hideaki Moriyama, Hitoshi Miyakawa, and Midori Matsumoto

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Opportunities for behavioral rescue under rapid environmental change, Samuel B. Fey, David A. Vasseur, Karla Alujević, Kristy J. Kroeker, Michael L. Logan, Mary I. O'Connor, Volker H.W. Rudolf, John DeLong, Scott Peacor, Rebecca L. Selden, A Sih, and Susana Clusella‐Trullas

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Microbial Community of Saline, Alkaline Lakes in the Nebraska Sandhills Based on 16S rRNA Gene Amplicon Sequence Data, Nicole A. Fiore, David D. Dunigan, Julie J. Shaffer, Ryan Roberts, Sanjay Antony-Babu, Bradley A. Plantz, Kenneth W. Nickerson, Andrew K. Benson, and Karrie A. Weber

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Modeling Genomes to Phenomes to Populations in a Changing Climate: The Need for Collaborative Networks, Nika Galic, Allyson G. Hindle, John P. DeLong, Karen Watanabe, Valery Forbes, and C. Loren Buck

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Student Understanding of DNA Structure–Function Relationships Improves from Using 3D Learning Modules with Dynamic 3D Printed Models, Michelle E. Howell, Christine S. Booth, Sharmin M. Sikich, Tomáš Helikar, Rebecca Roston, Brain A. Couch, and Karin van Dijk

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Investigating how faculty social networks and peer influence relate to knowledge and use of evidence-based teaching practices, A.K. Lane, John Skvoretz, J.P. Ziker, B.A. Couch, B. Earl, J.E. Lewis, J.D. McAlpin, L.B. Prevost, S.E. Shadle, and M. Stains

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Investigating how faculty social networks and peer influence relate to knowledge and use of evidence-based teaching practices, A. K. Lane, J. Skvoretz, J. P. Ziker, B. A. Couch, B. Earl, J. E. Lewis, J. D. McAlpin, L. B. Prevost, S. E. Shadle, and M. Stains

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Phenotypically Plastic Responses to Predation Risk Are Temperature Dependent, Thomas M. Luhring, Janna M. Vavra, Clayton E. Cressler, and John DeLong

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Metabolism Underlies Physiological Homeostasis in Drosophila, Omera B. Matoo, Cole R. Julick, and Kristi Montooth

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“What Will I Experience in My College STEM Courses?” An Investigation of Student Predictions about Instructional Practices in Introductory Courses, Clara L. Meaders, Emma S. Toth, A. K. Lane, J. Kenny Shuman, Brian Couch, Marilyne Stains, MacKenzie R. Stetzer, Erin Vinson, and Michelle K. Smith

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Physiological and genomic evidence that selection on the transcription factor Epas1 has altered cardiovascular function in highaltitude deer mice, Rena M. Schweizer, Jonathan P. Velotta, Catherine M. Ivy, Matthew R. Jones, Sarah M. Muir, Gideon S. Bradburd, Jay F. Storz, Graham R. Scott, and Zachary A. Cheviron

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The accelerating influence of humans on mammalian macroecological patterns over the late Quaternary, Felisa A. Smith, Rosemary E. Elliott Smith, S. Kathleen Lyons, Jonathan L. Payne, and Amelia Villaseñor

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Tools for Change: Measuring Student Conceptual Understanding Across Undergraduate Biology Programs Using Bio-MAPS Assessments, Michelle K. Smith, Sara E. Brownell, Alison J. Crowe, N. G. Holmes, Jennifer K. Knight, Katharine Semsar, Mindi M. Summers, Cole Walsh, Christian D. Wright, and Brian A. Couch

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Life Ascending: Mechanism and Process in Physiological Adaptation to High-Altitude Hypoxia, Jay F. Storz and Graham R. Scott

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Changes in the diet and body size of a small herbivorous mammal (hispid cotton rat, Sigmodon hispidus) following the late Pleistocene megafauna extinction, Catalina P. Tomé, Emma A. Elliott Smith, S. Kathleen Lyons, Seth D. Newsome, and Felisa A. Smith

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Reorganization of surviving mammal communities after the end-Pleistocene megafaunal extinction, Anikó B. Tóth, S. Kathleen Lyons, W. Andrew Barr, Anna K. Behrensmeyer, Jessica L. Blois, René Bobe, Matt Davis, Andrew Du, Jussi T. Eronen, J. Tyler Faith, Danielle Fraser, Nicholas J. Gotelli, Gary R. Graves, Advait M. Jukar, Joshua H. Miller, Silvia Pineda-Munoz, Laura C. Soul, Amelia Villaseñor, and John Alroy

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Arena Size Modulates Functional Responses via Behavioral Mechanisms, Stella F. Uiterwaal, Anthony I. Dell, and John P. DeLong

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Body Condition Helps to Explain Metabolic Rate Variation in Wolf Spiders, Stella F. Uiterwaal and John P. DeLong

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Can VEGFC Form Turing Patterns in the Zebrafish Embyro?, Kenneth Y. Wertheim and Tina Roose

2018

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CD32 is expressed on cells with transcriptionally active HIV but does not enrich for HIV DNA in resting T cells, Mohamed Abdel-Mohsen, Leticia Kuri-Cervantes, Judith Grau-Exposito, Adam M. Spivak, Racheal A. Nell, Costin Tomescu, Surya Kumari Vadrevu, Leila B. Giron, Carla Serra-Peinado, Meritxell Genesca, Josep Castellvi, Guoxin Wu, Perla M. Del Rio Estrada, Mauricio Gonzalez-Navarro, Kenneth Lynn, Collin T. King, Sai Vemula, Kara Cox, Yanmin Wan, Qingsheng Li, Karam Mounzer, Jay Kostman, Ian Frank, Mirko Paiardini, Daria Hazuda, Gustavo Reyes-Teran, Douglas Richman, Bonnie Howell, Pablo Tebas, Javier Martinez-Picado, Vicente Planelles, Maria J. Buzon, Michael R. Betts, and Luis J. Montaner

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What Types of instructional shifts Do students experience? investigating active learning in science, Technology, engineering, and Math classes across Key Transition Points from Middle school to the University level, Kenneth Akiha, Emilie Brigham, Brain A. Couch, Justin Lewin, Marilyne Stains, MacKenzie R. Stetzer, Erin L. Vinson, and Michelle K. Smith

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Males and females evolve riskier traits in populations with eavesdropping parasitoids, Oliver M. Beckers and William E. Wagner

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RNAi Doxxes Segregation Distorters on the X, Justin P. Blumenstiel and Colin D. Meiklejohn

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Mitochondrial Dysfunction and Infection Generate Immunity–Fecundity Tradeoffs in Drosophila, Justin L. Buchanan, Colin D. Meiklejohn, and Kristi L. Montooth

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Fueling Defense: Effects of Resources on the Ecology and Evolution of Tolerance to Parasite Infection, Sarah A. Budischak and Clayton E. Cressler

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Feeding immunity: Physiological and Behavioral responses to infection and resource limitation, Sarah A. Budischak, Christina B. Hansen, Quentin Caudron, Romain Garnier, Tyler R. Kartzinel, István Pelczer, Clayton E. Cressler, Anieke van Leeuwen, and Andrea L. Graham

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Multiple–True–False Questions Reveal the Limits of the Multiple–Choice Format for Detecting Students with Incomplete Understandings, Brian Couch, Joanna K. Hubbard, and Chad Brassil

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Student, instructor, and observer agreement regarding frequencies of scientific teaching practices using the Measurement Instrument for Scientific Teaching-Observable (MISTO), Mary F. Durham, Jennifer Knight, Emily K. Bremers, Jameson D. DeFreece, Alex R. Paine, and Brian A. Couch

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Energetic tradeoffs control the size distribution of aquatic mammals, William Gearty, Craig R. McClain, and Jonathan Payne

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A Probable Case of Incipient Speciation in Schizocosa Wolf Spiders Driven by Allochrony, Habitat Use, and Female Mate Choice, R. Tucker Gilman, Kasey Fowler-Finn, and Eileen A. Hebets

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Evolutionary origins of vocal mimicry in songbirds, Maria Goller and Daizaburo Shizuka

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Cross-ecosystem effects of terrestrial predators link treefrogs, zooplankton, and aquatic primary production, Jessica L. Hite, Myra C. Hughey, Karen M. Warkentin, and James R. Vonesh

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Energy demand and the context-dependent effects of genetic interactions underlying metabolism, Luke A. Hoekstra, Cole R. Julick, Katelyn M. Mika, and Kristi L. Montooth

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Gene Turnover and Diversification of the α- and β- Globin Gene Families in Sauropsid Vertebrates, Federico G. Hoffmann, Michael W. Vandewege, Jay F. Storz, and Juan C. Opazo

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Presence of fruits decreases probability of retaining flowers in a sequentially flowering plant, Shivani Jadeja and Brigitte Tenhumberg

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Influenza D virus M2 protein exhibits ion channel activity in Xenopus laevis oocytes, Evan Kesinger, Jianing Liu, Aaron Jensen, Catherine P. Chia, Andrew Demers, and Hideaki Moriyama

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Molecular machinery of auxin synthesis,secretion, and perception in the unicellular chlorophyte alga Chlorella sorokiniana UTEX 1230, Maya Khasin, Rebecca E. Cahoon, Kenneth Nickerson, and Wayne R. Riekhof

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Change in dominance determines herbivore effects on plant biodiversity, Sally E. Koerner, Johannes Knops, Dustin J. Strong, and 80 more co-authors

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Synbiotics for Improved Human Health: Recent Developments, Challenges, and Opportunities, Janina A. Krumbeck, Jens Walter, and Robert W. Hutkins

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Predators modify the temperature dependence of life-history trade-offs, Thomas M. Luhring, Janna M. Vavra, Clayton E. Cressler, and John DeLong

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Gene flow mediates the role of sex chromosome meiotic drive during complex speciation, Colin D. Meiklejohn, Emily L. Landeen, Kathleen E. Gordon, Thomas Rzatkiewicz, Sarah B. Kingan, Anthony J. Geneva, Jeffrey P. Vedanayagam, Christina A. Muirhead, Daniel Garrigan, Daven C. Presgraves, and David L. Stern

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The development and application of bioinformatics core competencies to improve bioinformatics training and education, Nicola Mulder, Russell Schwartz, Michelle D. Brazas, Cath Brooksbank, Bruno Gaeta, Sarah L. Morgan, Mark A. Pauley, Anne Rosenwald, Gabriella Rustici, Michael Sierk, Tandy Warnow, and Lonnie Welch

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Molecular basis of hemoglobin adaptation in the high-flying bar-headed goose, Chandrasekhar Natarajan, Agnieszka Jendroszek, Amit Kumar, Roy E. Weber, Jeremy R. H. Tame, Angela Fago, and Jay F. Storz

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Temperature Drives Epidemics in a Zooplankton-Fungus Disease System: A Trait-Driven Approach Points to Transmission via Host Foraging, Marta S. Shocket, Alexander T. Strauss, Jessica L. Hite, Maja Šljivar, David J. Civitello, Meghan A. Duffy, Carla E. Cáceres, and Spencer R. Hall

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Parasite rearing and infection temperatures jointly influence disease transmission and shape seasonality of epidemics, Marta S. Shocket, Daniela Vergara, Andrew J. Sickbert, Jason M. Walsman, Alexander T. Strauss, Jessica L. Hite, Meghan A. Duffy, Carla E. Caceres, and Spencer R. Hall