Identification and Phylogeny of the First T Cell Epitope Identified from a Human Gut Bacteroides Species

Authors

• Maria Elisa Perez-Muñoz, University of Nebraska–LincolnFollow
• Payal Joglekar, Johns Hopkins University School of Medicine
• Yi-Ji Shen, National Taiwan Ocean University
• Kuan Y. Chang, National Taiwan Ocean University
• Daniel A. Peterson, Johns Hopkins University School of MedicineFollow

Document Type

Article

Date of this Version

12-2015

Citation

Perez-Muñoz ME, Joglekar P, Shen Y-J, Chang KY, Peterson DA (2015) Identification and Phylogeny of the First T Cell Epitope Identified from a Human Gut Bacteroides Species. PLoS ONE 10(12): e0144382. doi:10.1371/journal.pone.0144382

Comments

© 2015 Perez-Muñoz et al. This is an open access article distributed under the terms of the Creative Commons Attribution License

Abstract

Host T cell reactivity toward gut bacterial epitopes has been recognized as part of disease pathogenesis. However, the specificity of T cells that recognize this vast number of epitopes has not yet been well described. After colonizing a C57BL/6J germ-free mouse with the human gut symbiotic bacteria Bacteroides thetaiotaomicron, we isolated a T cell that recognized these bacteria in vitro. Using this T cell, we mapped the first known non-carbohydrate T cell epitope within the phylum Bacteroidetes. The T cell also reacted to two other additional Bacteroides species. We identified the peptide that stimulated the T cell by using a genetic approach. Genomic data from the epitope-positive and epitope-negative bacteria explain the cross-reactivity of the T cell to multiple species. This epitope degeneracy should shape our understanding of the T cell repertoire stimulated by the complex microbiome residing in the gastrointestinal tract in both healthy and disease states.