2008
Comparative Metabolite Profiling of Carboxylic Acids in Rat Urine by CE-ESI MS/MS through Positively Pre-charged and 2H-coded Derivatization, Wen-Chu Yang, Fred E. Regnier, and Jiri Adamec
Stable Isotope-Coded Quaternization for Comparative Quantification of Estrogen Metabolites by High-Performance Liquid Chromatography-Electrospray Ionization Mass Spectrometry, Wen-Chu Yang, Fred E. Regnier, Dan Silva, and Jiri Adamec
Molybdoproteomes and evolution of molybdenum utilization, Yan Zhang and Vadim N. Gladyshev
In silico Identification of Genes Involved in Selenium Metabolism: Evidence for a Third Selenium Utilization Trait, Yan Zhang, Anton Turanov, Dolph Hatfield, and Vadim N. Gladyshev
Structural Basis of the Transcriptional Regulation of the Proline Utilization Regulon by Multifunctional PutA, Yuzhen Zhou, John D. Larson, Christopher A. Bottoms, Emilia C. Arturo, Michael T. Henzl, Jermaine L. Jenkins, Jay C. Nix, Donald F. Becker, and John J. Tanner
2007
A Cadmium-transporting PIB-type ATPase in Yeast Saccharomyces cerevisiae, David J. Adle, Devis Sinani, Heejeong Kim, and Jaekwon Lee
Crystal Structure of Formate Dehydrogenase H: Catalysis Involving Mo, Molybdopterin, Selenocysteine, and an Fe4S4 Cluster, Jeffrey C. Boyington, Vadim Gladyshev, Sergei V. Khangulov, Thressa C. Stadtman, and Peter D. Sun
SELECTIVE RESTORATION OF THE SELENOPROTEIN POPULATION IN A MOUSE HEPATOCYTE SELENOPROTEINLESS BACKGROUND WITH DIFFERENT MUTANT SELENOCYSTEINE tRNAs LACKING, Bradley A. Carlson, Mohamed E. Moustafa, Aniruddha Sengupta, Ulrich Schweizer, Rajeev Shrimali, Mahadev Rao, Nianxin Zhong, Shulin Wang, Lionel Feigenbaum, Byeong Jae Lee, Vadim N. Gladyshev, and Dolph L. Hatfield
High-Throughput Identification of Catalytic Redox-Active Cysteine Residues, Dmitri E. Fomenko, Weibing Xing, Blakely M. Adair, David J. Thomas, and Vadim Gladyshev
Supporting Online Material for “High-Throughput Identification of Catalytic Redox-Active Cysteine Residues”, Dmitri E. Fomenko, Weibing Xing, Blakely M. Adair, David J. Thomas, and Vadim Gladyshev
Novel metabolism in Chlamydomonas through the lens of genomics, Arthur R. Grossman, Martin Croft, Vadim N. Gladyshev, Sebeeha S. Merchant, Matthew C. Posewitz, Simon Prochnik, and Martin H. Spalding
Expression, Processing, and Glycosaminoglycan Binding Activity of the Recombinant Human 315-kDa Hyaluronic Acid Receptor for Endocytosis (HARE), Ed Harris, Svetlana V. Kyosseva, Janet A. Weigel, and Paul H. Weigel
Lipidomic Analysis of Glioblastoma Multiforme Using Mass Spectrometry, Soo Jung Ha, Gordon Showalter, Shanbao Cai, Haiyan Wang, Wei Michael Liu, Aaron Cohen-Gadol, Jann N. Sarkaria, Jenna Rickus, John Springer, Jiri Adamec, Karen E. Pollok, and Kari L. Clase
Evidence for a Pro-oxidant Intermediate in the Assembly of Cytochrome Oxidase, Oleh Khalimonchuk, Amanda Bird, and Dennis R. Winge
Arabidopsis thaliana GH3.9 influences primary root growth, Sadaf Khan and Julie M. Stone
A systematic approach to the development of fluorescent contrast agents for optical imaging of mouse cancer models, Joy L. Kovar, Melanie A. Simpson, Amy Schutz-Geschwender, and D. Michael Olive
Purification method directly influences effectiveness of an epidermal growth factor-coupled targeting agent for noninvasive tumor detection in mice, Joy L. Kovar, William M. Volcheck, Jiyan Chen, and Melanie A. Simpson
The Sep15 Protein Family: Roles in Disulfide Bond Formation and Quality Control in the Endoplasmic Reticulum, Vyacheslav M. Labunskyy, Dolph L. Hatfield, and Vadim N. Gladyshev
High-throughput screening for fatty acid uptake inhibitors in humanized yeast identifies atypical antipsychotic drugs that cause dyslipidemias, Hong Li, Paul N. Black, Aalap Chokshi, Angel Sandoval-Alvarez, Ravi Vatsyayan, Whitney Sealls, and Concetta DiRusso
Mechanistic Studies of the Long Chain Acyl-CoA Synthetase Faa1p from Saccharomyces cerevisiae, Hong Li, Elaina M. Melton, Steven Quackenbush, Concetta C. DiRusso, and Paul N. Black
Evolutionary Dynamics of Eukaryotic Selenoproteomes: Large Selenoproteomes May Associate With Aquatic Life and Small with Terrestrial Life, Alexei Lobanov, Dmitri E. Fomenko, Yan Zhang, and Aniruddha Sengupta
Evolutionary dynamics of eukaryotic selenoproteomes: large selenoproteomes may associate with aquatic life and small with terrestrial life, Alexey V. Lobanov, Dmitri E. Fomenko, Yan Zhang, Aniruddha Sengupta, Dolph L. Hatfield, and Vadim N. Gladyshev
Selenoprotein H Is a Nucleolar Thioredoxin-like Protein with a Unique Expression Pattern, Sergey V. Novoselov, Gregory V. Kryukov, Xue-Ming Xu, Bradley A. Carlson, Dolph L. Hatfield, and Vadim N. Gladyshev
A highly efficient form of the selenocysteine insertion sequence element in protozoan parasites and its use in mammalian cells, Sergey V. Novoselov, Alexey V. Lobanov, Deame Hua, Marina V. Kasaikina, Dolph L. Hatfield, and Vadim Gladyshev
Supporting Information for: A highly efficient form of the selenocysteine insertion sequence element in protozoan parasites and its use in mammalian cells, Sergey V. Novoselov, Alexey V. Lobanov, Deame Hua, Marina V. Kasaikina, Dolph L. Hatfield, and Vadim Gladyshev
Coa1 links the Mss51 post-translational function to Cox1 cofactor insertion in cytochrome c oxidase assembly, Fabien Pierrel, Megan L. Bestwick, Paul A. Cobine, Oleh Khalimonchuk, Julia A. Cricco, and Dennis R. Winge
NMR assignments of 1H, 13C and 15N spectra of methionine sulfoxide reductase B1 from Mus musculus, Lena S. Sal, Finn L. Aachmann, Hwa-Young Kim, Vadim N. Gladyshev, and Alexander Dikiy
Identification and characterization of a selenoprotein family containing a diselenide bond in a redox motif, Valentina A. Shchedrina, Sergey V. Novoselov, Mikalai I. Malinouski, and Vadim N. Gladyshev
Distinct Mechanisms for Ctr1-mediated Copper and Cisplatin Transport, Devis Sinani, David J. Adle, Heejeong Kim, and Jaekwon Lee
Identification of Functional Subclasses in the DJ-1 Superfamily Proteins, Ying Wei, Dagmar Ringe, Mark A. Wilson, and Mary Jo Ondrechen
Selenophosphate synthetase 2 is essential for selenoprotein biosynthesis, Xue-Ming Xu, Bradley A. Carlson, Robert Irons, Heiko Mix, Nianxin Zhong, Vadim Gladyshev, and Dolph L. Hatfield
Biosynthesis of Selenocysteine on Its tRNA in Eukaryotes, Xue-Ming Xu, Bradley A. Carlson, Heiko Mix, Yan Zhang, Kazima Saira, Richard S. Glass, Marla J. Berry, Vadim Gladyshev, and Dolph L. Hatfield
New Developments in Selenium Biochemistry: Selenocysteine Biosynthesis in Eukaryotes and Archaea, Xue-Ming Xu, Bradley A. Carlson, Yan Zhang, Heiko Mix, Gregory V. Kryukov, Richard S. Glass, Marla J. Berry, Vadim N. Gladyshev, and Dolph L. Hatfield
A new strategy for assessing selenoprotein function: siRNA knockdown/knock-in targeting the 3'-UTR, MIN-HYUK YOO, XUE-MING XU, ANTON A. TURANOV, BRADLEY A. CARLSON, VADIM N. GLADYSHEV, and DOLPH L. HATFIELD
High content of proteins containing 21st and 22nd amino acids, selenocysteine and pyrrolysine, in a symbiotic deltaproteobacterium of gutless worm Olavius algarvensis, Yan Zhang and Vadim N. Gladyshev
2006
Purification and Initial Biochemical Characterization of ATP:Cob(I)alamin Adenosyltransferase (EutT) Enzyme of Salmonella enterica, Nicole R. Baun and Jorge C. Escalante-Semerena
Peroxidase-dependent apoplastic oxidative burst in Arabidopsis required for pathogen resistance, Laurence V. Bindschedler, Julia Dewdney, Kris A. Blee, Julie M. Stone, Tsuneaki Asai, Julia Plotnikov, Carine Denoux, Tezni Hayes, Chris Gerrish, Dewi R. Davies, Frederick M. Ausubel, and G. Paul Bolwell
Studies of the CobA-Type ATP:Co(I)rrinoid Adenosyltransferase Enzyme of Methanosarcina mazei Strain Gõ1, Nicole R. Buan, Kimberly Rehfeld, and Jorge C. Escalante-Semerena
Mammalian and other eukaryotic selenocysteine tRNAs, Bradley A. Carlson, Xue-Ming Xu, Rajeev Shrimali, Aniruddha Sengupta, Min-Hyuk Yoo, Robert Irons, Nianxin Zhong, Dolph L. Hatfield, Byeong Jae Lee, Alexei V. Lobanov, and Vadim N. Gladyshev
Mouse models for assessing the role of selenoproteins in health and development, Bradley A. Carlson, Xue-Ming Xu, Rajeev Shrimali, Aniruddha Sengupta, Min-Hyuk Yoo, Nianxin Zhong, Dolph L. Hatfield, Robert Irons, Cindy D. Davis, Byeong Jae Lee, Sergey V. Novoselov, and Vadim N. Gladyshev
Lysine residues in N-terminal and C-terminal regions of human histone H2A are targets for biotinylation by biotinidase, Yap Ching Chew, Gabriela Camporeale, Nagarama Kothapalli, Gautam Sarath, and Janos Zempleni
NMR Structures of the Selenoproteins Sep15 and SelM Reveal Redox Activity of a New Thioredoxin-like Family, Andrew D. Ferguson, Vyacheslav Labunskyy, Dmitri E. Fomenko, Demet Arac, Yogarany Chelliah, Carlos A. Amexcua, Josep Rizo, Vadim N. Gladyshev, and Johann Deisenhofer
Selenoproteins and selenoproteomes, Vadim N. Gladyshev
"Preface" to Selenium: Its Molecular Biology and Role in Human Health, Second Edition, Dolph L. Hatfield, Marla J. Berry, and Vadim N. Gladyshev
A Characterization of Subterranean Termites in Nebraska Using Micro-Morphological and Molecular Techniques, Timothy J. Husen, Shripat T. Kamble, and Julie M. Stone
Microsatellite Genotyping to Distinguish Colonies and IntraSpecies Genetic Variation in the Eastern Subterranean Termite, Reticulitermes flavipes (Isoptera: Rhinotermitidae), Timothy J. Husen, Shripat T. Kamble, and Julie M. Stone
Sequential Processing of a Mitochondrial Tandem Protein: Insights into Protein Import in Schizosaccharomyces pombe, Oleh Khalimonchuk, Martin Ott, Soledad Funes, Kai Ostermann, Gerhard Rödel, and Johannes M. Herrmann
Alternative first exon splicing regulates subcellular distribution of methionine sulfoxide reductases, Hwa-Young Kim and Vadim Gladyshev
Selenium and methionine sulfoxide reduction, Hwa-Young Kim and Vadim N. Gladyshev
Hyaluronidase Expression Induces Prostate Tumor Metastasis in an Orthotopic Mouse Model, Joy L. Kovar, Mark A. Johnson, William M. Volcheck, Jiyan Chen, and Melanie A. Simpson
The 15-kDa selenoprotein (Sep15): functional analysis and role in cancer, Vyacheslav M. Labunskyy, Vadim N. Gladyshev, and Dolph L. Hatfield
The Plasmodium selenoproteome, Alexey V. Lobanov, Cesar Delgado, Stefan Rahlfs, Sergey V. Novoselov, Gregory V. Kryukov, Stephan Gromer, Dolph L. Hatfield, Katja Becker, and Vadim Gladyshev
Selenium metabolism in Trypanosoma: characterization of selenoproteomes and identification of a Kinetoplastida-specific selenoprotein, Alexey V. Lobanov, Stephan Gromer, Gustavo Salinas, and Vadim Gladyshev
Is there a twenty third amino acid in the genetic code?, Alexey V. Lobanov, Gregory V. Kryukov, Dolph L. Hatfield, and Vadim Gladyshev
SECIS elements in the coding regions of selenoprotein transcripts are functional in higher eukaryotes, Heiko Mix, Alexey V. Lobanov, and Vadim Gladyshev
Supplementary Material for: SECIS elements in the coding regions of selenoprotein transcripts are functional in higher eukaryotes, Heiko Mix, Alexey V. Lobanov, and Vadim Gladyshev
Identification and characterization of Fep15, a new selenocysteine-containing member of the Sep15 protein family, Sergey V. Novoselov, Deame Hua, A. V. Lobanov, and Vadim N. Gladyshev
S-adenosylmethionine stabilizes cystathionine β-synthase and modulates redox capacity, Anna Prudova, Zachary Bauman, Aaron Braun, Victor Vitvitsky, Shelly C. Lu, and Ruma Banerjee
Selenoproteins in parasites, Gustavo Salinas, Alexei V. Lobanov, and Vadim N. Gladyshev
Evolution of selenocysteine decoding and the key role of selenophosphate synthetase in the pathway of selenium utilization, Gustavo Salinas, Héctor Romero, Xue-Ming Xu, Bradley A. Carlson, Dolph L. Hatfield, and Vadim N. Gladyshev
Concurrent Expression of Hyaluronan Biosynthetic and Processing Enzymes Promotes Growth and Vascularization of Prostate Tumors in Mice, Melanie A. Simpson
Characterization of Alternative Cytosolic Forms and Cellular Targets of Mouse Mitochondrial Thioredoxin Reductase, Anton A. Turanov, Dan Su, and Vadim N. Gladyshev
Methods and Materials for Making and Using Transgenic Dicamba-Degrading Organisms, Donald P. Weeks, Xiao-Zhuo Wang, and Patricia L. Herman
Thioredoxin Reductase 1 Deficiency Reverses Tumor Phenotype and Tumorigenicity of Lung Carcinoma Cells, Min-Hyuk Yoo, Xue-Ming Xu, Bradley A. Carlson, Vadim N. Gladyshev, and Dolph L. Hatfield
An ascorbate-reducible cytochrome b561 is localized in macrophage lysosomes, De-liang Zhang, Dan Su, Alajos Berczi , Amy Vargas , and Han H. Asard
Dynamic evolution of selenocysteine utilization in bacteria: a balance between selenoprotein loss and evolution of selenocysteine from redox active cysteine residues, Yan Zhang, Hector Romero, Gustavo Salinas, and Vadim Gladyshev
2005
Computer-assisted Docking of Flavodoxin with the ATP:Co(I)rrinoid Adenosyltransferase (CobA) Enzyme Reveals Residues Critical for Protein-Protein Interactions but Not for Catalysis, Nicole R. Baun and Jorge C. Escalante-Semerena
Crystal structures of oxidized and reduced mitochondrial thioredoxin reductase provide molecular details of the reaction mechanism, Ekaterina I. Biterova, Anton A. Turanov, Vadim N. Gladyshev, and Joseph J. Barycki
Computer-assisted Docking of Flavodoxin with the ATP:Co(I)rrinoid Adenosyltransferase (CobA) Enzyme Reveals Residues Critical for Protein-Protein Interactions but Not for Catalysis*, Nicole R. Buan and Jorge C. Escalante-Semerena
Selective Rescue of Selenoprotein Expression in Mice Lacking a Highly Specialized Methyl Group in Selenocysteine tRNA, Bradley A. Carlson, Xue-Ming Xu, Vadim N. Gladyshev, and Dolph L. Hatfield
Um34 in selenocysteine tRNA is required for the expression of stress-related selenoproteins in mammals, Bradley A. Carlson, Xue-Ming Xu, Vadim N. Gladyshev, and Dolph L. Hatfield
Diversity and functional plasticity of eukaryotic selenoproteins: Identification and characterization of the SelJ family, Sergi Castellano, Alexey V. Lobanov, Charles Chapple, Sergey V. Novoselov, Mario Albrecht, Deame Hua, Alain Lescure, Thomas Lengauer, Alain Krol, Vadim N. Gladyshev, and Roderic Guigó
Glycoprotein gp130 of Dictyostelium discoideum Influences Macropinocytosis and Adhesion, Catherine P. Chia, Sujatha Gomathinayagam, Robert J. Schmaltz, and Laura K. Smoyer
Regulation of Enteric Endophytic Bacterial Colonization by Plant Defenses, A. Leonardo Iniguez, Yuemei Dong, Heather D. Carter, Brian M. M. Ahmer, Julie M. Stone, and Eric W. Triplett
Different Catalytic Mechanisms in Mammalian Selenocysteine- and Cysteine-Containing Methionine-R-Sulfoxide Reductases, Hwa-Young Kim and Vadim Gladyshev
pH-Dependent Substrate Preference of Pig Heart Lipoamide Dehydrogenase Varies with Oligomeric State: Response to Mitochondrial Matrix Acidification, Natalia L. Klyachko, Valentina A. Shchedrina, Alexander V. Efimov, Sergey V. Kazakov, Irina G. Gazaryan, Bruce S. Kristal, and Abraham M. Brown
A Novel Cysteine-rich Domain of Sep15 Mediates the Interaction with UDP-glucose:Glycoprotein Glucosyltransferase, Vyacheslav M. Labunskyy, Andrew D. Ferguson, Dmitri E. Fomenko, Yogarany Chelliah, Dolph L. Hatfield, and Vadim N. Gladyshev
Evolution of selenium utilization traits, Hector Romero, Yan Zhang, Vadim Gladyshev, and Gustavo Salinas
Phylogenetic engineering at an interface between large and small subunits imparts land-plant kinetic properties to algal Rubisco, Robert J. Spreitzer, Srinivasa R. Peddi, and Sriram Satagopan
Arabidopsis AtSPL14, a plant-specific SBP-domain transcription factor, participates in plant development and sensitivity to fumonisin B1, Julie M. Stone, Xinwen Liang, Emily R. Nekl, and Justin J. Stiers
Selenocysteine insertion directed by the 3’-UTR SECIS element in Escherichia coli, Dan Su, Yehua Li, and Vadim Gladyshev
Mammalian Selenoprotein Thioredoxin-glutathione Reductase, Dan Su, Sergey V. Novoselov, Qi-An Sun, Mohamed E. Moustafa, You Zhou, Richard Oko, Dolph L. Hatfield, and Vadim N. Gladyshev
Nematode selenoproteome: the use of the selenocysteine insertion system to decode one codon in an animal genome?, Kalin Taskov, Charles Chapple, Gregory V. Kryukov, Sergi Castenello, Alexei V. Lobanov, Konstantin V. Korotkov, Roderic Guigo, and Vadim Gladyshev
Evidence for Direct Roles of Two Additional Factors, SECp43 and Soluble Liver Antigen, in the Selenoprotein Synthesis Machinery, Xue-Ming Xu, Heiko Mix, Bradley A. Carlson, Paula J. Grabowski, Vadim N. Gladyshev, Marla J. Berry, and Dolph L. Hatfield
Pyrrolysine and Selenocysteine Use Dissimilar Decoding Strategies, Yan Zhang, Pavel V. Baranov, John F. Atkins, and Vadim N. Gladyshev
The microbial selenoproteome of the Sargasso Sea, Yan Zhang, Dmitri E. Fomenko, and Vadim Gladyshev
An algorithm for identification of bacterial selenocysteine insertion sequence elements and selenoprotein genes, Yan Zhang and Vadim Gladyshev
2004
The Identity of Proteins Associated with a Small Heat Shock Protein during Heat Stress in Vivo Indicates That These Chaperones Protect a Wide Range of Cellular Functions, Eman Basha, Garrett J. Lee, Linda A. Breci, Andrew C. Hausrath, Nicole R. Baun, Kim C. Giese, and Elizabeth Vierling
The Identity of Proteins Associated with a Small Heat Shock Protein during Heat Stress in Vivo Indicates That These Chaperones Protect a Wide Range of Cellular Functions, Eman Basha, Garrett J. Lee, Linda A. Breci, Andrew C. Hausrath, Nicole R. Buan, Kim C. Giese, and Elizabeth Vierling
The eutT Gene of Salmonella enterica Encodes an Oxygen-Labile, Metal-Containing ATP:Corrinoid Adenosyltransferase Enzyme, Nicole R. Buan, Sang-Jin Suh, and Jorge C. Escalante-Semerena
Specific Excision of the Selenocysteine tRNA [Ser]Sec (Trsp) Gene in Mouse Liver Demonstrates an Essential Role of Selenoproteins in Liver Function, Bradley A. Carlson, Sergey V. Novoselov, Easwari Kumaraswamy, Byeong Jae Lee, Miriam R. Anver, Vadim N. Gladyshev, and Dolph L. Hatfield
Identification and characterization of phosphoseryl-tRNA [Ser]Sec kinase, Bradley A. Carlson, Xue-Ming Xu, Gregory V. Kryukov, Mahadev Rao, Marla J. Berry, Vadim N. Gladyshev, and Dolph L. Hatfield
Reconsidering the evolution of eukaryotic selenoproteins: a novel nonmammalian family with scattered phylogenetic distribution, Sergi Castellano, Sergey V. Novoselov, Gregory V. Kryukov, Alain Lescure, Enrique Blanco, Alain Krol, Vadim N. Gladyshev, and Roderic Guigo
Reconsidering the evolution of eukaryotic selenoproteins: a novel nonmammalian family with scattered phylogenetic distribution, Sergi Castellano, Sergey V. Novoselov, Gregory V. Kryukov, Alain Lescure, Enrique Blanco, Alain Krol, Vadim N. Gladyshev, and Roderic Guigo
Interactions between Small Heat Shock Protein Subunits and Substrate in Small Heat Shock Protein-Substrate Complexes, Kenneth L. Friedrich, Kim C. Giese, Nicole R. Baun, and Elizabeth Vierling
Interactions between Small Heat Shock Protein Subunits and Substrate in Small Heat Shock Protein-Substrate Complexes, Kenneth L. Friedrich,; Kim C. Giese; Nicole R. Buan; and Elizabeth Vierling
5-Hydroxydecanoate is metabolised in mitochondria and creates a rate-limiting bottleneck for β-oxidation of fatty acids, Peter J. Hanley, Stefan Dröse, Ulrich Brandt, Rachel A. Lareau, Abir L. Banerjee, D. K. Srivastava, Leonard J. Banaszak, Joseph J. Barycki, Paul P. Van Veldhoven, and Jürgen Daut
Endocytic Function, Glycosaminoglycan Specificity, and Antibody Sensitivity of the Recombinant Human 190-kDa Hyaluronan Receptor for Endocytosis (HARE), Ed Harris, Janet A. Weigel, and Paul H. Weigel
Methionine Sulfoxide Reduction in Mammals: Characterization of Methionine-R-Sulfoxide Reductases, Hwa-Young Kim and Vadim Gladyshev