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2012

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Managing Nitrogen and Phosphorus Nutrients for Switchgrass Produced for Bioenergy Feedstock in Phosphorus-Deficient Soil, Mohua Haque, Jon T. Biermacher, Maru Kering, and John A. Guretzky

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Advances in Genome Sequencing and Genotyping Technology for Soybean Diversity Analysis, David L. Hyten

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Biomass Yield and Nutrient Responses of Switchgrass to Phosphorus Application, M. K. Kering, J. T. Biermacher, T. J. Butler, J. Mosali, and John A. Guretzky

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Biomass Yield and Nutrient Removal Rates of Perennial Grasses under Nitrogen Fertilization, M. K. Kering, T. J. Butler, J. T. Biermacher, and John A. Guretzky

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Molecular mapping of soybean rust resistance in soybean accession PI 561356 and SNP haplotype analysis of the Rpp1 region in diverse germplasm, Ki-Seung Kim, Jair R. Unfried, D. L. Hyten, Reid D. Frederick, Glen L. Hartman, Randall L. Nelson, Qijian Song, and Brian W. Diers

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Identification of positive yield QTL alleles from exotic soybean germplasm in two backcross populations, K.-S. Kim, B. W. Diers, D. L. Hyten, M. A. Rouf Mian, J. G. Shannon, and R. L. Nelson

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Modulation of kernel storage proteins in grain sorghum (Sorghum bicolor (L.) Moench), Tejinder Kumar, Ismail M. Dweikat, Shirley Sato, Zhengxiang Ge, Natalya Nersesian, Han Chen, Thomas Elthon, Scott Bean, Brian P. Ioerger, Mike Tilley, and Thomas Clemente

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Modulation of kernel storage proteins in grain sorghum (Sorghum bicolor (L.) Moench), Tejinder Kumar, Ismail M. Dweikat, Shirley Sato, Zhengxiang Ge, Natalya Nersesian, Han Chen, Thomas Elthon, Scott Bean, Brian P. Ioerger, Mike Tilley, and Thomas E. Clemente

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Estimating Construction Costs for a Low-Cost Quonset-style Greenhouse, David P. Lambe, Stacy A. Adams, and Ellen T. Paparozzi

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Structural Variants in the Soybean Genome Localize to Clusters of Biotic Stress-Response Genes, Leah K. McHale, William J. Haun, Wayne W. Xu, Pudota B. Bhaskar, Justin E. Anderson, D. L. Hyten, Daniel J. Gerhardt, Jeffrey A. Jeddeloh, and Robert M. Stupar

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An Investigation of Reflective Mulches for use over Capillary Mat Systems for Winter-time Greenhouse Strawberry Production, George E. Meyer, Ellen T. Paparozzi, Elizabeth Walter-Shea, Erin E. Blankenship, and Stacy A. Adams

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Switchgrass Harvest and Storage, Robert B. Mitchell and Marty R. Schmer

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Inheritance of grain polyphenol oxidase (PPO) activity in multiple wheat (Triticum aestivum L.) genetic backgrounds, Somrudee Nilthong, Robert A. Graybosch, and P. Stephen Baenziger

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Inheritance of grain polyphenol oxidase (PPO) activity in multiple wheat (Triticum aestivum L.) genetic backgrounds, Somrudee Nilthong, Robert A. Graybosch, and P. Stephen Baenziger

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The Return Of Capillary Mats, Ellen T. Paparozzi and George E. Meyer

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Greenhouse Production of Strawberries During the Winter, Ellen T. Paparozzi, George E. Meyer, Stacy A. Adams, M. Elizabeth Conley, Benjamin A. Loseke, and Paul E. Read

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Crop Management of Switchgrass, Matt A. Sanderson, Marty R. Schmer, Vance Owens, Pat Keyser, and Wolter Elbersen

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Identification and Characterization of Four Missense Mutations in Brown midrib 12 (Bmr12), the Caffeic O-Methyltranferase (COMT) of Sorghum, Scott E. Sattler, Nathan A. Palmer, Ana Saballos, Ann M. Greene, Zhanguo Xin, Gautam Sarath, Wilfred Vermerris, and Jeffrey F. Pedersen

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Genome-Wide Analysis of Syntenic Gene Deletion in the Grasses, James C. Schnable, Michael Freeling, and Eric Lyons

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Escape from Preferential Retention following Repeated Whole Genome Duplications in Plants, James C. Schnable, Xiaowu Wang, J. Chris Pires, and Michael Freeling

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2011 Vadose Zone Nitrate Study at Hastings, NE (Revised), Roy F. Spalding and Martin Toavs

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Quantitative trait locus analysis of saturated fatty acids in a population of recombinant inbred lines of soybean, Xianzhi Wang, Guo-Liang Jiang, Marci Green, Roy A. Scott, D. L. Hyten, and P. B. Cregan

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Rosette Iron Deficiency Transcript and MicroRNA Profiling Reveals Links between Copper and Iron Homeostasis in Arabidopsis thaliana, Brian M. Waters, Samuel A. McInturf, and Ricardo J. Stein

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Natural variation in iron use efficiency and mineral remobilization in cucumber (Cucumis sativus), Brian Waters and Grace Troupe

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Local Conditions, Not Regional Gradients, Drive Demographic Variation of Giant Ragweed (Ambrosia trifida) and Common Sunflower (Helianthus annuus) Across Northern U.S. Maize Belt, Samuel E. Wortman, Adam Davis, Brian Schutte, John L. Lindquist, John Cardina, Joel Felix, Christy L. Sprague, J. Anita Dille, Analiza H. M. Ramirez, Graig Reicks, and Sharon A. Clay

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Optimizing Cover Crop Benefits with Diverse Mixtures and an Alternative Termination Method, Samuel E. Wortman, Charles Francis, Mark L. Bernards, Rhae A. Drijber, and John L. Lindquist

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Cover Crop Mixtures for the Western Corn Belt: Opportunities for Increased Productivity and Stability, Samuel E. Wortman, Charles Francis, and John L. Lindquist

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Ecosystem Services: The Significance of Contributions by Invasive Plant Species, Stephen L. Young

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True integrated weed management, Stephen L. Young

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High-Resolution Mapping of Open Chromatin in the Rice Genome, Wenli Zhang, Yufeng Wu, James C. Schnable, Zixian Zeng, Michael Freeling, Gregory E. Crawford, and Jiming Jiang

2011

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Registration of ‘NH03614 CL’ Wheat, P. Stephen Baenziger, Robert A. Graybosch, Lenis Alton Nelson, Teshome H. Regassa, Robert N. Klein, D. D. Baltensperger, Dipak K. Santra, A. M. H. Ibrahim, W. Berzonsky, J. M. Krall, Lei Xu, Stephen N. Wegulo, M. L. Bernards, Y. Jin, J. Kolmer, J. H. Hatchett, M.-S. Chen, and G. Bai

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Structuring an Efficient Organic Wheat Breeding Program, P. Stephen Baenziger, Ibrahim Salah, Richard S. Little, Dipak K. Santra, Teshome Regassa, and Meng Yuan Wang

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A First Insight into Population Structure and Linkage Disequilibrium in the U.S. Peanut Minicore Collection, Vikas Belamkar, Michael Gomez Selvaraj, Jamie L. Ayers, Paxton R. Payton, Naveen Puppala, and Mark D. Burow

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WHAT IS THE POTENTIAL OF SUBSTITUTING LEGUMES FOR SYNTHETIC NITROGEN IN WARM SEASON PERENNIAL GRASSES USED FOR STOCKER CATTLE GRAZING?, J. Biermacher, John A. Guretzky, Ryan Reuter, Maru Kering, Twain Butler, Job Springer, James Rogers, John Blanton, and Joe Bouton

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Integrated soil–crop system management for food security, Xin-Ping Chen, Zhen-Ling Cui, Peter M. Vitousek, Kenneth Cassman, Pamela A. Matson, Jin-Shun Bai, Qing-Feng Meng, Peng Hou, Shan-Chao Yue, Volker Römheld, and Fu-Suo Zhang

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Heritable Epigenetic Variation among Maize Inbreds, Steve R. Eichten, Ruth A. Swanson, James C. Schnable, Amanda J. Waters, Peter J. Hermanson, Sanzhen Liu, Cheng-Ting Yeh, Yi Jia, Karla Gendler, Michael Freeling, Patrick S. Schnable, Matthew W. Vaughn, and Nathan M. Springer

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High-yield irrigated maize in the Western U.S. Corn Belt: I. On-farm yield, yield potential, and impact of agronomic practices, Patricio Grassini, John Thorburn, Charles Burr, and Kenneth Cassman

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High-yield irrigated maize in the Western U.S. Corn Belt: II. Irrigation management and crop water productivity, Patricio Grassini, Haishun Yang, Suat Irmak, John Thorburn, Charles Burr, and Kenneth G. Cassman

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Registration of ‘Anton’ Hard White Winter Wheat, Robert A. Graybosch, C. James Peterson, P. Stephen Baenziger, David D. Baltensperger, Lenis Alton Nelson, Yue Jin, James A. Kolmer, Bradford W. Seabourn, and Brian S. Beecher

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Switchgrass for forage and bioenergy: Harvest and nitrogen rate effects on biomass yields and nutrient composition, John A. Guretzky, Jon T. Biermacher, Billy Cook, Maru K. Kering, and Jagadeesh Mosali

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The Composition and Origins of Genomic Variation among Individuals of the Soybean Reference Cultivar Williams 82, William J. Haun, D. L. Hyten, Wayne W. Xu, Daniel J. Gerhardt, Thomas J. Albert, Todd Richmond, Jeffrey A. Jeddeloh, Gaofeng Jia, Nathan M. Springer, Carroll P. Vance, and Robert M. Stupar

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Identification of a Second Asian Soybean Rust Resistance Gene in Hyuuga Soybean, Mandy D. Kendrick, Donna K. Harris, Bo-Keun Ha, D. L. Hyten, P. B. Cregan, Reid D. Frederick, H. Roger Boerma, and Kerry F. Pedley

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Effect of Nitrogen Fertilizer Rate and Harvest Season on Forage Yield, Quality, and Macronutrient Concentrations in Midland Bermuda grass, Maru K. Kering, John A. Guretzky, Eddie Funderburg, and Jagadeesh Mosali

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Stacking Resistance Alleles from Wild and Domestic Soybean Sources Improves Soybean Cyst Nematode Resistance, Myungsik Kim, D. L. Hyten, Terry L. Niblack, and Brian W. Diers

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Adding Value to Graduate Education: The Comprehensive Examination, John L. Lindquist, Samuel E. Wortman, and Charles Francis

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Genome-Wide Association Analysis Identifies Candidate Genes Associated with Iron Deficiency Chlorosis in Soybean, Sujan Mamidi, Shireen Chikara, R. Jay Goos, D. L. Hyten, Deepti Annam, Samira Mafi Moghaddam, Rian K. Lee, P. B. Cregan, and Phillip E. McClean

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Learning Gains and Response to Digital Lessons on Soil Genesis and Development, Martha Mamo, James A. Ippolito, Timothy A. Kettler, Ronald Reuter, Dennis L. McCallister, Patricia Morner, Dann E. Husmann, and Erin E. Blankenship

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Biological Suppression of Velvetleaf (Abutilon theophrasti ) in an Eastern Nebraska Soil, Jane Okalebo, Gary Y. Yuen, Rhae A. Drijber, Erin E. Blankenship, Cafer Eken, and John L. Lindquist

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Mutational analysis of the major soybean UreF paralogue involved in urease activation, Joe C. Polacco, D. L. Hyten, Mônica Medeiros-Silva, David A. Sleper, and Kristin D. Bilyeu

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Volume, texture, and molecular mechanism behind the collapse of bread made with different levels of hard waxy wheat flours, Shivananda K. Garimella Purna, Rebecca A. Miller, Paul A. Seib, Robert A. Graybosch, and Yong-Cheng Shi

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Estimation of surface soil organic matter using a ground-based active sensor and aerial imagery, D. F. Roberts, V. I. Adamchuk, J. F. Shanahan, R. B. Ferguson, and J. S. Schepers

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Switchgrass Contains Two Cinnamyl Alcohol Dehydrogenases Involved in Lignin Formation, Aaron J. Saathoff, Christian M. Tobias, Scott E. Sattler, Eric J. Haas, Paul Twigg, and Gautam Sarath

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Corn and Velvetleaf (Abutilon theophrasti ) Transpiration in Response to Drying Soil, Jared Schmidt, Erin E. Blankenship, and John L. Lindquist

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Genes Identified by Visible Mutant Phenotypes Show Increased Bias toward One of Two Subgenomes of Maize, James C. Schnable and Michael Freeling

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Dose–Sensitivity, Conserved Non-Coding Sequences, and Duplicate Gene Retention through Multiple Tetraploidies in the Grasses, James C. Schnable, Brent S. Pedersen, Sabarinath Subramaniam, and Michael Freeling

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Use of natural variation reveals core genes in the transcriptome of iron-deficient Arabidopsis thaliana roots, Ricardo J. Stein and Brian M. Waters

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Screening Synteny Blocks in Pairwise Genome Comparisons through Integer Programming, Haibao Tang, Eric Lyons, Brent Pedersen, James C. Schnable, Andrew H. Paterson, and Michael Freeling

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No-tillage increases soil profile carbon and nitrogen under long-term rainfed cropping systems, Gary E. Varvel and Wallace Wilhelm

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The role of transition metal homeostasis in plant seed development, Elsbeth L. Walker and Brian M. Waters

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Moving magnesium in plant cells, Brian M. Waters

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Moving micronutrients from the soil to the seeds: Genes and physiological processes from a biofortification perspective, Brian Waters and Renuka P. Sankaran

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High Yield Corn Production Can Result in High Nitrogen Use Efficiency, Charles S. Wortmann, Charles A. Shapiro, Achim Dobermann, Richard B. Ferguson, Gary W. Hergert, Daniel Walters, and David Tarkalson

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Integrating Management of Soil Nitrogen and Weeds, Samuel E. Wortman, Adam Davis, Brian J. Schutte, and John L. Lindquist

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Soil fertility and crop yields in long-term organic and conventional cropping systems in Eastern Nebraska, Samuel E. Wortman, Tomie D. Galusha, Stephen C. Mason, and Charles A. Francis

2010

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Complementary genetic and genomic approaches help characterize the linkage group I seed protein QTL in soybean, Yung-Tsi Bolon, Bindu Joseph, Steven B Cannon, Michelle A Graham, Brian W Diers, Andrew D Farmer, Gregory D May, Gary J Muehlbauer, James Specht, Zheng Jin Tu, Nathan Weeks, Wayne W Xu, Randy C. Shoemaker, and Carroll P Vance

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Emissions Savings in the Corn-Ethanol Life Cycle from Feeding Coproducts to Livestock, Virgil R. Bremer, Adam Liska, Terry J. Klopfenstein, Galen E. Erickson, Haishun S. Yang, Daniel T. Walters, and Kenneth G. Cassman

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Crop Registration: The Pathway to Public Access of Plant Genetic Materials to Build Crops for the Future, D. D. Ellis, K. A. Garland-Campbell, J. A. Grotenhuis, M. M. Jenderek, and Jeffrey F. Pedersen

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‘Food for Life’: Looking beyond the horizon, Charles Francis and John W. Doran

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Re-examining the role of ABA as the primary long-distance signal produced by water-stressed roots, Jason Q. D. Goodger and Daniel P. Schachtman

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Fertilizer Rate Effects on Forage Yield Stability and Nutrient Uptake of Midland Bermudagrass, John A. Guretzky, Maru K. Kering, Jagadeesh Mosali, Eddie Funderburg, and Jon T. Biermacher

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Spring Grazing Impacts on the Vegetation of Reed Canarygrass–Invaded Wetlands, Heidi Hilhouse, Susan J. Tunnell, and James L. Stubbendieck

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High-throughput SNP discovery through deep resequencing of a reduced representation library to anchor and orient scaffolds in the soybean whole genome sequence, David L Hyten, Steven B Cannon, Qijian Song, Nathan Weeks, Edward W Fickus, Randy C Shoemaker, James E Specht, Andrew D Farmer, Gregory D May, and Perry B Cregan

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A High Density Integrated Genetic Linkage Map of Soybean and the Development of a 1536 Universal Soy Linkage Panel for Quantitative Trait Locus Mapping, D. L. Hyten, Ik-Young Choi, Qijian Song, James E. Specht, Thomas E. Carter Jr., Randy C. Shoemaker, Eun-Young Hwang, Lakshmi K. Matukumalli, and P. B. Cregan

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Factors Affecting the Alkaline Cooking Performance of Selected Corn and Sorghum Hybrids, Weston B. Johnson, Wajira S. Ratnayake, David S. Jackson, Kyung-Min Lee, Timothy J. Herrman, Scott R. Bean, and Stephen Mason

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Economic Potential of Substituting Legumes for Synthetic Nitrogen in Warm Season Perennial Grasses used for Stocker Cattle Grazing, Maru Kering, John Biermacher, Ryan Reuter, Twain Butler, Job D. Springer, James Rogers, John Blanton, Joe Bouton, and John A. Guretzky

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Fine mapping the soybean aphid resistance gene Rag1 in soybean, Ki-Seung Kim, Stephanie Bellendir, Karen A. Hudson, Curtis B. Hill, Glen L. Hartman, D. L. Hyten, Matthew E. Hudson, and Brian W. Diers

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Fine mapping of the soybean aphid-resistance gene Rag2 in soybean PI 200538, Ki-Seung Kim, Curtis B. Hill, Glen L. Hartman, D. L. Hyten, Matthew E. Hudson, and Brian W. Diers

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Effect of Nitrogen Addition and Weed Interference on Soil Nitrogen and Corn Nitrogen Nutrition, John L. Lindquist, Sean P. Evans, Charles A. Shapiro, and Stevan Z. Knezevic

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Structural and Functional Divergence of a 1-Mb Duplicated Region in the Soybean (Glycine max) Genome and Comparison to an Orthologous Region from Phaseolus vulgaris, Jer-Young Lin, Robert M. Stupar, Christian Hans, D. L. Hyten, and Scott A. Jackson

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Selecting Strawberry Cultivars for Winter Greenhouse Production, Ellen T. Paparozzi, Stacy A. Adams, George E. Meyer, M. Elizabeth Conley, Vicki L. Schlegel, Erin E. Blankenship, and Paul E. Read

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Heterosis in Sweet Sorghum and Selection of a New Sweet Sorghum Hybrid for Use in Syrup Production in Appalachia, T. W. Pfeiffer, M. J. Bitzer, J. J. Toy, and Jeffrey F. Pedersen

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Evaluation Of The Intercom Model For Predicting Growth Of Forest Herbs, Zorica S. Popović and J. L. Lindquist

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SPRING SEED GUIDE 2010: NEBRASKA VARIETY AND HYBRID TESTS -- SOYBEANS, Teshome Regassa, Robert N. Klein, Bruce Anderson, Charles Shapiro, and Jim Krall

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Tomato root transcriptome response to a nitrogen-enriched soil patch, Daniel R. Ruzicka, Felipe H. Barrios-Masias, Natasha T. Hausmann, Louise E. Jackson, and Daniel P. Schachtman

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Growth And Fitness Components Of Wild × Cultivated Sorghum Bicolor (Poaceae) Hybrids In Nebraska, Lilyrani Sahoo, Jared J. Schmidt, Jeffrey F. Pedersen, Donald Lee, and John L. Lindquist

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Efficacy of Singular and Stacked brown midrib 6 and 12 in the Modification of Lignocellulose and Grain Chemistry, Scott E. Sattler, Deanna L. Funnell-Harris, and Jeffrey F. Pedersen

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Efficient Methods of Estimating Switchgrass Biomass Supplies, Marty R. Schmer, Robert B. Mitchell, Kenneth P. Vogel, Walter H. Schacht, and David B. Marx

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Genome sequence of the palaeopolyploid soybean, Jeremy Schmutz, Steven B. Cannon, Jessica Schlueter, Jianxin Ma, Therese Mitros, William Nelson, David L. Hyten, Qijian Song, Jay J. Thelen, Jianlin Cheng, Dong Xu, Uffe Hellsten, Gregory D. May, Yeisoo Yu, Tetsuya Sakurai, Taishi Umezawa, Madan K. Bhattacharyya, Devinder Sandhu, Babu Valliyodan, Erika Lindquist, Myron Peto, David Grant, Shengqiang Shu, David Goodstein, Kerrie Barry, Montona Futrell-Griggs, Brian Abernathy, Jianchang Du, Zhixi Tian, Liucun Zhu, Navdeep Gill, Trupti Joshi, Marc Libault, Ananad Sethuraman, Xue-Cheng Zhang, Kazuo Shinozaki, Henry T. Nguyen, Rod A. Wing, Perry Cregan, James E. Specht, Jane Grimwood, Dan Rokhsar, Gary Stacey, Randy C. Shoemaker, and Scott A. Jackson

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An Integrative Approach to Genomic Introgression Mapping, Andrew J. Severin, Gregory A. Peiffer, Wayne W. Xu, D. L. Hyten, Bruna Bucciarelli, Jamie A. O'Rourke, Yung-Tsi Bolon, David Grant, Andrew D. Farmer, Gregory D. May, Carroll P. Vance, Randy C. Shoemaker, and Robert M. Stupar

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RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome, Andrew J. Severin, Jenna L. Woody, Yung-Tsi Bolon, Bindu Joseph, Brian W. Diers, Andrew D. Farmer, Gary J. Muehlbauer, Rex T. Nelson, David Grant, James E. Specht, Michelle A. Graham, Steven B. Cannon, Gregory D. May, Carroll P. Vance, and Randy C. Shoemaker

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Abundance of SSR Motifs and Development of Candidate Polymorphic SSR Markers (BARCSOYSSR_1.0) in Soybean, Qijian Song, Gaofeng Jia, Youlin Zhu, David Grant, Rex T. Nelson, Eun-Young Hwang, D. L. Hyten, and P. B. Cregan

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Artificial selection for determinate growth habit in soybean, Zhixi Tian, Xiaobo Wang, Rian Lee, Yinghui Li, James E. Specht, Randall L. Nelson, Phillip E. McClean, Lijuan Qiu, and Jianxin Ma

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Following Tetraploidy in Maize, a Short Deletion Mechanism Removed Genes Preferentially from One of the Two Homeologs, Margaret R. Woodhouse, James C. Schnable, Brent S. Pedersen, Eric Lyons, Damon Lisch, Shabarinath Subramaniam, and Michael Freeling

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Dryland Performance of Sweet Sorghum and Grain Crops for Biofuel in Nebraska, Charles S. Wortmann, Adam Liska, Richard B. Ferguson, Drew J. Lyon, R. N. Klein, and Ismail M. Dweikat

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Increased weed diversity, density and above-ground biomass in long-term organic crop rotations, Samuel E. Wortman, John L. Lindquist, Milton J. Haar, and Charles Francis

2009

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Blue Fescue Overseeding Improves Performance of Fairway Height Buffalograsses, Bekele G. Abeyo, Robert C. Shearman, Roch E. Gaussoin, Leonard A. Wit, Desalegn D. Serba, and Ugur Bilgili

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Farmers and nature conservation: What is known about attitudes, context factors and actions affecting conservation?, Johan Ahnström, Jenny Höckert, Hanna L. Bergea, Charles Francis, Peter Skelton, and Lars Hallgren

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Scaling up of CO2 fluxes from leaf to canopy in maize-based agroecosystems, Timothy J. Arkebauer, Elizabeth A. Walter-Shea, Mark A. Mesarch, Andrew E. Suyker, and Shashi Verma

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Quantum Simulation of High-Order Harmonic Spectra of the Hydrogen Atom, A. D. Bandrauk, S. Chelkowski, Dennis J. Diestler, J. Manz, and K.-J. Yuan

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Effects of Nitrogen Supply on the Root Morphology of Corn and Velvetleaf, Kimberly D. Bonifas and John L. Lindquist