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2011

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The Composition and Origins of Genomic Variation among Individuals of the Soybean Reference Cultivar Williams 82, William J. Haun, D. L. Hyten, Wayne W. Xu, Daniel J. Gerhardt, Thomas J. Albert, Todd Richmond, Jeffrey A. Jeddeloh, Gaofeng Jia, Nathan M. Springer, Carroll P. Vance, and Robert M. Stupar

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Identification of a Second Asian Soybean Rust Resistance Gene in Hyuuga Soybean, Mandy D. Kendrick, Donna K. Harris, Bo-Keun Ha, D. L. Hyten, P. B. Cregan, Reid D. Frederick, H. Roger Boerma, and Kerry F. Pedley

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Effect of Nitrogen Fertilizer Rate and Harvest Season on Forage Yield, Quality, and Macronutrient Concentrations in Midland Bermuda grass, Maru K. Kering, John A. Guretzky, Eddie Funderburg, and Jagadeesh Mosali

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Stacking Resistance Alleles from Wild and Domestic Soybean Sources Improves Soybean Cyst Nematode Resistance, Myungsik Kim, D. L. Hyten, Terry L. Niblack, and Brian W. Diers

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Adding Value to Graduate Education: The Comprehensive Examination, John L. Lindquist, Samuel E. Wortman, and Charles Francis

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Genome-Wide Association Analysis Identifies Candidate Genes Associated with Iron Deficiency Chlorosis in Soybean, Sujan Mamidi, Shireen Chikara, R. Jay Goos, D. L. Hyten, Deepti Annam, Samira Mafi Moghaddam, Rian K. Lee, P. B. Cregan, and Phillip E. McClean

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Learning Gains and Response to Digital Lessons on Soil Genesis and Development, Martha Mamo, James A. Ippolito, Timothy A. Kettler, Ronald Reuter, Dennis L. McCallister, Patricia Morner, Dann E. Husmann, and Erin E. Blankenship

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Miscanthus 3 giganteus productivity: the effects of management in different environments, Matt Maughan, German Bollero, D.K. Lee, Robert Darmody, Stacy Bonos, Laura Cortese, James Murphy, Roch E. Gaussoin, Matthew Sousek, David Williams, Linda Williams, Fernando Miguez, and Thomas Voigt

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Registration of Seven Winter Wheat Germplasm Lines Carrying the Wsm1 Gene for Wheat Streak Mosaic Virus Resistance, Jasdeep S. Mutti, P. Stephen Baenziger, Robert A. Graybosch, Roy French, and Kulvinder S. Gill

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Biological Suppression of Velvetleaf (Abutilon theophrasti ) in an Eastern Nebraska Soil, Jane Okalebo, Gary Y. Yuen, Rhae A. Drijber, Erin E. Blankenship, Cafer Eken, and John L. Lindquist

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Cytokinin-mediated source ⁄sink modifications improve drought tolerance and increase grain yield in rice under water-stress, Zvi Peleg, Maria Reguera, Ellen Tumimbang, Harkamal Walia, and Eduardo Blumwald

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Mutational analysis of the major soybean UreF paralogue involved in urease activation, Joe C. Polacco, D. L. Hyten, Mônica Medeiros-Silva, David A. Sleper, and Kristin D. Bilyeu

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Volume, texture, and molecular mechanism behind the collapse of bread made with different levels of hard waxy wheat flours, Shivananda K. Garimella Purna, Rebecca A. Miller, Paul A. Seib, Robert A. Graybosch, and Yong-Cheng Shi

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Estimation of surface soil organic matter using a ground-based active sensor and aerial imagery, D. F. Roberts, V. I. Adamchuk, J. F. Shanahan, R. B. Ferguson, and J. S. Schepers

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Switchgrass Contains Two Cinnamyl Alcohol Dehydrogenases Involved in Lignin Formation, Aaron J. Saathoff, Christian M. Tobias, Scott E. Sattler, Eric J. Haas, Paul Twigg, and Gautam Sarath

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Corn and Velvetleaf (Abutilon theophrasti ) Transpiration in Response to Drying Soil, Jared Schmidt, Erin E. Blankenship, and John L. Lindquist

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Genes Identified by Visible Mutant Phenotypes Show Increased Bias toward One of Two Subgenomes of Maize, James C. Schnable and Michael Freeling

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Dose–Sensitivity, Conserved Non-Coding Sequences, and Duplicate Gene Retention through Multiple Tetraploidies in the Grasses, James C. Schnable, Brent S. Pedersen, Sabarinath Subramaniam, and Michael Freeling

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Use of natural variation reveals core genes in the transcriptome of iron-deficient Arabidopsis thaliana roots, Ricardo J. Stein and Brian M. Waters

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Screening Synteny Blocks in Pairwise Genome Comparisons through Integer Programming, Haibao Tang, Eric Lyons, Brent S. Pedersen, James C. Schnable, Andrew H. Paterson, and Michael Freeling

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No-tillage increases soil profile carbon and nitrogen under long-term rainfed cropping systems, Gary E. Varvel and Wallace Wilhelm

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Switchgrass, Kenneth P. Vogel, Gautam Sarath, Aaron J. Saathoff, and Robert B. Mitchell

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The role of transition metal homeostasis in plant seed development, Elsbeth L. Walker and Brian M. Waters

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Moving magnesium in plant cells, Brian M. Waters

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Moving micronutrients from the soil to the seeds: Genes and physiological processes from a biofortification perspective, Brian M. Waters and Renuka P. Sankaran

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High Yield Corn Production Can Result in High Nitrogen Use Efficiency, Charles S. Wortmann, Charles A. Shapiro, Achim Dobermann, Richard B. Ferguson, Gary W. Hergert, Daniel Walters, and David Tarkalson

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Integrating Management of Soil Nitrogen and Weeds, Samuel E. Wortman, Adam Davis, Brian J. Schutte, and John L. Lindquist

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Soil fertility and crop yields in long-term organic and conventional cropping systems in Eastern Nebraska, Samuel E. Wortman, Tomie D. Galusha, Stephen C. Mason, and Charles A. Francis

2010

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Complementary genetic and genomic approaches help characterize the linkage group I seed protein QTL in soybean, Yung-Tsi Bolon, Bindu Joseph, Steven B Cannon, Michelle A Graham, Brian W. Diers, Andrew Farmer, Gregory D May, Gary J. Muehlbauer, James Specht, Zheng Jin Tu, Nathan Weeks, Wayne W Xu, Randy C. Shoemaker, and Carroll P Vance

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Emissions Savings in the Corn-Ethanol Life Cycle from Feeding Coproducts to Livestock, Virgil R. Bremer, Adam Liska, Terry J. Klopfenstein, Galen E. Erickson, Haishun Yang, Daniel T. Walters, and Kenneth G. Cassman

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Crop Registration: The Pathway to Public Access of Plant Genetic Materials to Build Crops for the Future, D. D. Ellis, K. A. Garland-Campbell, J. A. Grotenhuis, M. M. Jenderek, and Jeffrey F. Pedersen

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‘Food for Life’: Looking beyond the horizon, Charles Francis and John W. Doran

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Re-examining the role of ABA as the primary long-distance signal produced by water-stressed roots, Jason Q. D. Goodger and Daniel P. Schachtman

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Fertilizer Rate Effects on Forage Yield Stability and Nutrient Uptake of Midland Bermudagrass, John A. Guretzky, Maru K. Kering, Jagadeesh Mosali, Eddie Funderburg, and Jon T. Biermacher

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Inoculation with Arbuscular Mycorrhizal Fungi or Crop Rotation with Mycorrhizal Plants Improves the Growth of Maize in Limed Acid Sulfate Soil, Hasao Higo, Katsunori Isobe, Dong-Jin Kang, Kazuhiro Ujie, Rhae A. Drijber, and Ryuichi Ishii

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Spring Grazing Impacts on the Vegetation of Reed Canarygrass–Invaded Wetlands, Heidi Hilhouse, Susan J. Tunnell, and James L. Stubbendieck

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Good Agricultural Practices for Food Safety of Fresh Produce, Laurie Hodges

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High-throughput SNP discovery through deep resequencing of a reduced representation library to anchor and orient scaffolds in the soybean whole genome sequence, David L. Hyten, Steven B Cannon, Qijian Song, Nathan Weeks, Edward W Fickus, Randy C Shoemaker, James E. Specht, Andrew Farmer, Gregory D May, and Perry B Cregan

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High-throughput SNP discovery and assay development in common bean, David L. Hyten, Qijian Song, Edward W. Fickus, Charles V. Quigley, Jong-Sung Lim, Ik-Young Choi, Eun-Young Hwang, Marcial Pastor-Corrales, and Perry B. Cregan

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A High Density Integrated Genetic Linkage Map of Soybean and the Development of a 1536 Universal Soy Linkage Panel for Quantitative Trait Locus Mapping, D. L. Hyten, Ik-Young Choi, Qijian Song, James E. Specht, Thomas E. Carter Jr., Randy C. Shoemaker, Eun-Young Hwang, Lakshmi K. Matukumalli, and P. B. Cregan

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Factors Affecting the Alkaline Cooking Performance of Selected Corn and Sorghum Hybrids, Weston B. Johnson, Wajira S. Ratnayake, David S. Jackson, Kyung-Min Lee, Timothy J. Herrman, Scott R. Bean, and Stephen Mason

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Economic Potential of Substituting Legumes for Synthetic Nitrogen in Warm Season Perennial Grasses used for Stocker Cattle Grazing, Maru Kering, John Biermacher, Ryan Reuter, Twain Butler, Job D. Springer, James Rogers, John Blanton, Joe Bouton, and John A. Guretzky

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Fine mapping the soybean aphid resistance gene Rag1 in soybean, Ki-Seung Kim, Stephanie Bellendir, Karen A. Hudson, Curtis B. Hill, Glen L. Hartman, D. L. Hyten, Matthew E. Hudson, and Brian W. Diers

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Fine mapping of the soybean aphid-resistance gene Rag2 in soybean PI 200538, Ki-Seung Kim, Curtis B. Hill, Glen L. Hartman, D. L. Hyten, Matthew E. Hudson, and Brian W. Diers

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Fine Mapping of the SCN Resistance Locus rhg1-b from PI 88788, Myungsik Kim, David L. Hyten, Andrew F. Bent, and Brian W. Diers

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Effect of Nitrogen Addition and Weed Interference on Soil Nitrogen and Corn Nitrogen Nutrition, John L. Lindquist, Sean P. Evans, Charles A. Shapiro, and Stevan Z. Knezevic

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Structural and Functional Divergence of a 1-Mb Duplicated Region in the Soybean (Glycine max) Genome and Comparison to an Orthologous Region from Phaseolus vulgaris, Jer-Young Lin, Robert M. Stupar, Christian Hans, D. L. Hyten, and Scott A. Jackson

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Selecting Strawberry Cultivars for Winter Greenhouse Production, Ellen T. Paparozzi, Stacy A. Adams, George E. Meyer, M. Elizabeth Conley, Vicki L. Schlegel, Erin E. Blankenship, and Paul E. Read

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Heterosis in Sweet Sorghum and Selection of a New Sweet Sorghum Hybrid for Use in Syrup Production in Appalachia, T. W. Pfeiffer, M. J. Bitzer, J. J. Toy, and Jeffrey F. Pedersen

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Evaluation Of The Intercom Model For Predicting Growth Of Forest Herbs, Zorica S. Popović and J. L. Lindquist

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SPRING SEED GUIDE 2010: NEBRASKA VARIETY AND HYBRID TESTS -- SOYBEANS, Teshome Regassa, Robert N. Klein, Bruce Anderson, Charles A. Shapiro, and Jim Krall

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Tomato root transcriptome response to a nitrogen-enriched soil patch, Daniel R. Ruzicka, Felipe H. Barrios-Masias, Natasha T. Hausmann, Louise E. Jackson, and Daniel P. Schachtman

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Growth And Fitness Components Of Wild × Cultivated Sorghum Bicolor (Poaceae) Hybrids In Nebraska, Lilyrani Sahoo, Jared J. Schmidt, Jeffrey F. Pedersen, Donald Lee, and John L. Lindquist

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Transgenic maize lines with cell-type specific expression of fluorescent proteins in plastids, Amir Sattarzadeh, Jonathan Fuller, Salvador Moguel, Katia Wostrikoff, Shirley Sato, Sarah Covshoff, Tom Clemente, Maureen Hanson, and David Stern

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Efficacy of Singular and Stacked brown midrib 6 and 12 in the Modification of Lignocellulose and Grain Chemistry, Scott E. Sattler, Deanna L. Funnell-Harris, and Jeffrey F. Pedersen

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Efficient Methods of Estimating Switchgrass Biomass Supplies, Marty R. Schmer, Robert B. Mitchell, Kenneth P. Vogel, Walter H. Schacht, and David B. Marx

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Genome sequence of the palaeopolyploid soybean, Jeremy Schmutz, Steven B. Cannon, Jessica Schlueter, Jianxin Ma, Therese Mitros, William Nelson, David L. Hyten, Qijian Song, Jay J. Thelen, Jianlin Cheng, Dong Xu, Uffe Hellsten, Gregory D. May, Yeisoo Yu, Tetsuya Sakurai, Taishi Umezawa, Madan K. Bhattacharyya, Devinder Sandhu, Babu Valliyodan, Erika Lindquist, Myron Peto, David Grant, Shengqiang Shu, David Goodstein, Kerrie Barry, Montona Futrell-Griggs, Brian Abernathy, Jianchang Du, Zhixi Tian, Liucun Zhu, Navdeep Gill, Trupti Joshi, Marc Libault, Ananad Sethuraman, Xue-Cheng Zhang, Kazuo Shinozaki, Henry T. Nguyen, Rod A. Wing, Perry Cregan, James E. Specht, Jane Grimwood, Dan Rokhsar, Gary Stacey, Randy C. Shoemaker, and Scott A. Jackson

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An Integrative Approach to Genomic Introgression Mapping, Andrew J. Severin, Gregory A. Peiffer, Wayne W. Xu, D. L. Hyten, Bruna Bucciarelli, Jamie A. O'Rourke, Yung-Tsi Bolon, David Grant, Andrew Farmer, Gregory D. May, Carroll P. Vance, Randy C. Shoemaker, and Robert M. Stupar

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RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome, Andrew J. Severin, Jenna L. Woody, Yung-Tsi Bolon, Bindu Joseph, Brian W. Diers, Andrew Farmer, Gary J. Muehlbauer, Rex T. Nelson, David Grant, James E. Specht, Michelle A. Graham, Steven B. Cannon, Gregory D. May, Carroll P. Vance, and Randy C. Shoemaker

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Abundance of SSR Motifs and Development of Candidate Polymorphic SSR Markers (BARCSOYSSR_1.0) in Soybean, Qijian Song, Gaofeng Jia, Youlin Zhu, David Grant, Rex T. Nelson, Eun-Young Hwang, D. L. Hyten, and P. B. Cregan

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Influences of wind and sandblasting on the endangered blowout penstemon, James Stubbendieck, Cheryl D. Dunn, Heidi L. Hillhouse, and L. M. Landholt

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Artificial selection for determinate growth habit in soybean, Zhixi Tian, Xiaobo Wang, Rian Lee, Yinghui Li, James E. Specht, Randall L. Nelson, Phillip E. McClean, Lijuan Qiu, and Jianxin Ma

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SoyDB: a knowledge database of soybean transcription factors, Zheng Wang, Marc Libault, Trupti Joshi, Babu Valliyodan, Henry T. Nguyen, Dong Xu, Gary Stacey, and Jianlin Cheng

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Following Tetraploidy in Maize, a Short Deletion Mechanism Removed Genes Preferentially from One of the Two Homeologs, Margaret R. Woodhouse, James C. Schnable, Brent S. Pedersen, Eric Lyons, Damon Lisch, Shabarinath Subramaniam, and Michael Freeling

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Dryland Performance of Sweet Sorghum and Grain Crops for Biofuel in Nebraska, Charles S. Wortmann, Adam Liska, Richard B. Ferguson, Drew J. Lyon, R. N. Klein, and Ismail M. Dweikat

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Increased weed diversity, density and above-ground biomass in long-term organic crop rotations, Samuel E. Wortman, John L. Lindquist, Milton J. Haar, and Charles Francis

2009

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Blue Fescue Overseeding Improves Performance of Fairway Height Buffalograsses, Bekele G. Abeyo, Robert C. Shearman, Roch E. Gaussoin, Leonard A. Wit, Desalegn D. Serba, and Ugur Bilgili

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Farmers and nature conservation: What is known about attitudes, context factors and actions affecting conservation?, Johan Ahnström, Jenny Höckert, Hanna L. Bergea, Charles Francis, Peter Skelton, and Lars Hallgren

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Scaling up of CO2 fluxes from leaf to canopy in maize-based agroecosystems, Timothy J. Arkebauer, Elizabeth A. Walter-Shea, Mark A. Mesarch, Andrew E. Suyker, and Shashi Verma

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Quantum Simulation of High-Order Harmonic Spectra of the Hydrogen Atom, A. D. Bandrauk, S. Chelkowski, Dennis J. Diestler, J. Manz, and K.-J. Yuan

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Effects of Nitrogen Supply on the Root Morphology of Corn and Velvetleaf, Kimberly D. Bonifas and John L. Lindquist

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Mapping and Confirmation of a New Allele at Rpp1 from Soybean PI 594538A Conferring RB Lesion–Type Resistance to Soybean Rust, Nanda Chakraborty, Joe Curley, Reid D. Frederick, D. L. Hyten, Randall L. Nelson, Glen L. Hartman, and Brian W. Diers

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Non-Destructive Determination of Maize Leaf and Canopy Chlorophyll Content, Veronica Ciganda, Anatoly A. Gitelson, and James S. Schepers

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Limits to maize productivity in the Western Corn-Belt: A simulation analysis for fully irrigated and rainfed conditions, Patricio Grassini, Haishun Yang, and Kenneth G. Cassman

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Evaluation of the waxy endosperm trait in proso millet (Panicum miliaceum), Robert A. Graybosch and D. D. Baltensperger

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Polyploidy creates higher diversity among Cynodon accessions as assessed by molecular markers, Osman Gulsen, Songul Sever-Mutlu, Nedim Mutlu, Metin Tuna, Osman Karaguzel, Robert C. Shearman, Terrance P. Riordan, and Tiffany M. Heng-Moss

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Grazing Lands and Soil Carbon Storage, John A. Guretzky

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Research emphasis – forage and bioenergy crop management, John A. Guretzky

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Switchgrass for Forage and Bioenergy: II. Effects of P and K fertilization, John A. Guretzky, Maru Kering, Jon Biermacher, and Billy Cook

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Bulked Segregant Analysis Using the GoldenGate Assay to Locate the Rpp3 Locus that Confers Resistance to Soybean Rust in Soybean, D. L. Hyten, James R. Smith, Reid D. Frederick, Mark L. Tucker, Qijian Song, and P. B. Cregan

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Switchgrass for Forage and Bioenergy: I. Effects of Nitrogen Rate and Harvest System, Maru Kering, J. T. Biermacher, Billy Cook, and John A. Guretzky

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Detection and validation of single feature polymorphisms using RNA expression data from a rice genome array, Sung-Hyun Kim, Prasanna R. Bhat, Xinping Cui, Harkamal Walia, Jin Xu, Steve Wanamaker, Abdelbagi M. Ismail, Clyde Wilson, and Timothy J. Close

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Response to Plevin: Implications for Life Cycle Emissions Regulations, Adam Liska and Kenneth G. Cassman

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Crop Yield Gaps: Their Importance, Magnitudes, and Causes, David B. Lobell, Kenneth G. Cassman, and Christopher B. Field

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Gibberellic Acid Promotes Seed Germination in Penstemon digitalis cv. Husker Red, Anderson Machado de Mello, Nereu Augusto Streck, Erin E. Blankenship, and Ellen Paparozzi

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Nutrient and Chemical Properties of Aging Golf Course Putting Greens as Impacted by Soil Depth and Mat Development, Ty A. McClellan, Roch E. Gaussoin, Bob Shearman, Charles S. Wortmann, Martha Mamo, Garald L. Horse, and David B. Marx

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Forage Yields from 2008-2009 Small Grains, Jagadeesh Mosali, John A. Guretzky, M. Saha, J. Baker, and S. Norton

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Forage Yields from 2008-2009 Ryegrass, Jagadeesh Mosali, John A. Guretzky, M. Saha, and S. Norton

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Alternative Methods for Wetland Restoration in the Rainwater Basin, Nebraska, USA, Nancy Nicolai and James L. Stubbendieck

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Antibiotic Use in Animal Production: Environmental Concerns, Teshome H. Regassa, Richard K. Koelsch, Charles S. Wortmann, Richard F. Randle, and Akwasi A. Abunyewa

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Farming systems education: Case study of Swedish test pilots, Lennart Salomonsson, Anna Nilsson, Sofia Palmer, Adam Roigart, and Charles Francis

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A Nonsense Mutation in a Cinnamyl Alcohol Dehydrogenase Gene Is Responsible for the Sorghum brown midrib6 Phenotype1[W][OA], Scott E. Sattler, Aaron J. Saathoff, Eric J. Haas, Nathan A. Palmer, Deanna L. Funnell, Gautam Sarath, and Jeffrey F. Pedersen

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Wheat (Triticum aestivum) NAM proteins regulate the translocation of iron, zinc, and nitrogen compounds from vegetative tissues to grain, Brian M. Waters, Cristobal Uauy, Jorge Dubcovsky, and Michael A. Grusak

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Agroecology as a science, a movement and a practice. A review, A. Wezel, S. Bellon, T. Doré, Charles Francis, D. Vallod, and C. David

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Evaluation of Glyphosate-Tolerant and Conventional Alfalfa Weed Control Systems during the First Year of Establishment, Robert Wilson Jr. and Paul Burgener

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High-Yielding Corn Response to Applied Phosphorus, Potassium, and Sulfur in Nebraska, Charles S. Wortmann, Achim R. Dobermann, Richard B. Ferguson, Gary W. Hergert, Charles A. Shapiro, D. D. Tarkalson, and Daniel T. Walters

2008

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Soybean Sowing Date: The Vegetative, Reproductive, and Agronomic Impacts, A. M. Bastidas, T. D. Setiyono, Achim Dobermann, Kenneth G. Cassman, Roger Wesley Elmore, George L. Graef, and James E. Specht

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Establishing Switchgrass for Grazing and Energy, John Biermacher, Billy Cook, and John A. Guretzky

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Importance and Effect of Nitrogen on Crop Quality and Health, Jürg Blumenthal, David D. Baltensperger, Kenneth G. Cassman, Stephen Mason, and Alexander Pavlista

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Characterization of the folate salvage enzyme p-aminobenzoylglutamate hydrolase in plants, Gale G. Bozzo, Gilles J. C. Basset, Valeria Naponelli, Alexandre Noiriel, Jesse F. Gregory III, and Andrew D. Hanson