Faculty associated with the Center for Plant Science Innovation include:
James R. Alfano, Plant Pathology
Heriberto D. Cerutti , Biological Sciences
Raymond Chollet, Biochemistry
Thomas Clemente, Horticulture and Agronomy
Thomas Elthon, Horticulture and Agronomy & Biological Sciences
Michael E. Fromm, Center for Biotechnology
Steven Harris, Plant Pathology
Sally A. Mackenzie, Horticulture and Agronomy
Etsuko Moriyama, Biological Sciences
T. Jack Morris, Biological Sciences
Paul Staswick, Horticulture and Agronomy
Julie M. Stone, Biochemistry
James L. Van Etten, Plant Pathology
Donald Weeks, Center for Biological Chemistry

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2006

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Review of Polarity in Plants, Annual Plant Reviews, Volume 12, Steven D. Harris

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Untemplated Oligoadenylation Promotes Degradation of RISC-Cleaved Transcripts, Fadia Ibrahim, Jennifer Rohr, Won-Joong Jeong, Jennifer Hesson, and Heriberto D. Cerutti

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Distinct Ceramide Synthases Regulate Polarized Growth in the Filamentous Fungus Aspergillus nidulansD, Shaojie Li, Liangcheng Du, Gary Yuen, and Steven D. Harris

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Supplemental Materials for "Distinct Ceramide Synthases Regulate Polarized Growth in the Filamentous Fungus Aspergillus nidulansD", Shaojie Li, Liangcheng Du, Gary Yuen, and Steven D. Harris

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GenomeBlast: a web tool for small genome comparison, Guoqing Lu, Liying Jiang, Resa M. K. Helikar, Thaine W. Rowley, Luwen Zhang, Xianfeng Chen, and Etsuko N. Moriyama

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Transcriptome Analysis of Aspergillus nidulans Exposed to Camptothecin-Induced DNA Damage, Iran Malazavi, Marcela Savoldi, Sonia Marla Zingaretti Di Mauro, Carlos Frederico Martins Menck, Steven D. Harris, Maria Helena de Souza Goldman, and Gustavo Henrique Goldman

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Protein–protein interactions of tandem affinity purification-tagged protein kinases in rice, Jai S. Rohila, Mei Chen, Shuo Chen, Johann Chen, Ronald Cerny, Chris Dardick, Patrick Canlas, Xia Xu, Michael Gribskov, Siddhartha Kanrar, Jian-Kang Zhu, P C. Ronald, and Michael E. Fromm

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Farnesol-induced apoptosis in Aspergillus nidulans reveals a possible mechanism for antagonistic interactions between fungi, Camile P. Semighini, Jacob M. Hornby, Raluca Dumitru, Kenneth Nickerson, and Steven D. Harris

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Functional Characterization of Aspergillus nidulans Homologues of Saccharomyces cerevisiae Spa2 and Bud6, Aleksandra Virag and Steven D. Harris

2005

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Folate Synthesis and Metabolism in Plants and Prospects For Biofortification, Gilles J. C. Basset, Eoin P. Quinlivan, Jesse F. Gregory III, and Andrew D. Hanson

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Sequencing of Aspergillus nidulans and comparative analysis with A. fumigatus and A. oryzae, James E. Galagan, Sarah E. Calvo, Christina Cuomo, Li-Jun Ma, Jennifer R. Wortman, Serafim Batzoglou, Su-In Lee, Meray Baştürkmen, Christina C. Spevak, Vladimir Kapitonov, Jerzy Jurka, Claudio Scazzocchio, Mark Farman, Jonathan Butler, Seth Purcell, Steven D. Harris, Gerhard H. Braus, Oliver Draht, Silke Busch, Christophe D'Enfert, Christiane Bouchier, Gustavo H. Goldman, Deborah Bell-Pedersen, Sam Griffiths-Jones, John H. Doonan, Jaehyuk Yu, Kay Vienken, Arnab Pain, Michael Freitag, Eric U. Selker, David B. Archer, Miguel Á. Peñalva, Berl R. Oakley, Michelle Momany, Toshihiro Tanaka, Toshitaka Kumagai, Kiyoshi Asai, Masayuki Machida, William C. Nierman, David W. Denning, Mark Caddick, Michael Hynes, Mathieu Paoletti, Reinhard Fischer, Bruce Miller, Paul Dyer, Matthew S. Sachs, Stephen A. Osmani, and Bruce W. Birren

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Radiative Neutron β-Decay in Effective Field Theory, Susan Gardner, Véronique Bernard, Ulf-G. Meißner, and Chi Zhang

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Pseudomonas syringae Type III Chaperones ShcO1, ShcS1, and ShcS2 Facilitate Translocation of Their Cognate Effectors and Can Substitute for Each Other in the Secretion of HopO1-1, Ming Guo, Scott T. Chancey, Fang Tian, Zhengxiang Ge, Yashitola Jamir, and James R. Alfano

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Polarisome Meets Spitzenkö̈rper: Microscopy, Genetics, and Genomics Converge, Steven D. Harris, Nick D. Read, Robert W. Roberson, Brian Shaw, Stephan Seiler, Mike Plamann, and Michelle Momany

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Plant organellar protein targeting: A traffic plan still under construction, Sally Ann MacKenzie

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Identification and expression analysis of two inorganic C-and N-responsive genes encoding novel and distinct molecular forms of eukaryotic phosphoenolpyruvate carboxylase in the green microalga Chlamydomonas reinhardtii, Tarlan G. Mamedov, Eric R. Moellering, and raymond chollet

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The hrpK Operon of Pseudomonas syringae pv. tomato DC3000 Encodes Two Proteins Secreted by the Type III (Hrp) Protein Secretion System: HopB1 and HrpK, a Putative Type III Translocator, Tanja Petnicki-Ocwieja, Karin V. van Dijk, and James R. Alfano

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United States Patent Application Publication: MAIZE CHLOROPLAST PROTEIN SYNTHESIS ELONGATION FACTORS AND METHODS OF USE FOR SAME, Zoran Ristic, Shailendra K. Bhadula, Genping Yang, Thomas Elthon, and Jeffrey E. Habben

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Functional Specialization of Chlamydomonas reinhardtii Cytosolic Thioredoxin h1 in the Response to Alkylation-Induced DNA Damage, Nandita Sarkar, Stephane Lemaire, Danxia Wu-Scharf, Emmanuelle Issakidis-Bourguet, and Heriberto D. Cerutti

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Monomethyl Histone H3 Lysine 4 as an Epigenetic Mark for Silenced Euchromatin in Chlamydomonas, Karin V. van Dijk, Katherine E. Marley, Byeong-Ryool Jeong, Jianping Xu, Jennifer Hesson, Ronald Cerny, Jakob H. Waterborg, and Heriberto D. Cerutti

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Aspergillus nidulans uvsBATR and scaANBS1 Genes Show Genetic Interactions during Recovery from Replication Stress and DNA Damage, Marcia Regina von Zeska Kress Fagundes, Camile P. Semighini, Iran Malazavi, Marcela Savoldi, Joel Fernandes de Lima, Maria Helena de Souza Goldman, Steven D. Harris, and Gustavo Henrique Goldman

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Chlorella Virus-Encoded Deoxyuridine Triphosphatases Exhibit Different Temperature Optima, Yuanzheng Zhang, Hideaki Moriyama, Kohei Homma, and James L. Van Etten

2004

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Folate synthesis in plants: The p-aminobenzoate branch is initiated by a bifunctional PabA–PabB protein that is targeted to plastids, Gilles J. C. Basset, Eoin P. Quinlivan, Stéphane Ravanel, Fabrice Rébeillé, Brian P. Nichols, Kazuo Shinozaki, Motoaki Seki, Lori C. Adams-Phillips, James J. Giovannoni, Jesse F. Gregory III, and Andrew D. Hanson

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Folate biofortification in tomatoes by engineering the pteridine branch of folate synthesis, Rocio Diaz de la Garza, Eoin P. Quinlivan, Sebastian M. J. Klaus, Gilles J. C. Basset, Jesse F. Gregory III, and Andrew D. Hanson

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Evaluation of the Escherichia coli threonine deaminase gene as a selectable marker for plant transformation, A. Ebmeier, L. Allison, Heriberto D. Cerutti, and Thomas E. Clemente

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A single amino acid substitution in soybean VSPα increases its acid phosphatase activity nearly 20-fold, Oranuch Leelapon, Gautam Sarath, and Paul E. Staswick

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MesA, a Novel Fungal Protein Required for the Stabilization of Polarity Axes in Aspergillus nidulans, Claire L. Pearson, Kaimei Xu, Kathryn E. Sharpless, and Steven D. Harris

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Tandem inverted repeat system for selection of effective transgenic RNAi strains in Chlamydomonas, Jennifer Rohr, Nandita Sarkar, Susan Belanger, Byeong-Ryool Jeong, and Heriberto D. Cerutti

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Activation of the Oryza sativa non-symbiotic haemoglobin-2 promoter by the cytokinin-regulated transcription factor, ARR1, Emily Ross, Julie M. Stone, Christian G. Elowsky, Raul Arredondo-Peter, Robert V. Klucas, and Gautam Sarath

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Pseudomonas syringae Type III Secretion System Targeting Signals and Novel Effectors Studied with a Cya Translocation Reporter, Lisa M. Schechter, Kathy A. Roberts, Yashitola Jamir, James R. Alfano, and Alan Collmer

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The Pseudomonas syringae HopPtoV Protein Is Secreted in Culture and Translocated into Plant Cells via the Type III Protein Secretion System in a Manner Dependent on the ShcV Type III Chaperone, Misty D. Wehling, Ming Guo, Zheng Qing Fu, and James R. Alfano

2003

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Substoichiometric shifting in the plant mitochondrial genome is influenced by a gene homologous to MutS, Ricardo V. Abdelnoor, Ryan Yule, Annakaisa Elo, Alan C. Christensen, Gilbert Meyer-Gauen, and Sally A. MacKenzie

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RNA interference: traveling in the cell and gaining functions?, Heriberto D. Cerutti

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United States Patent Application Publication: ISOLATION AND CHARACTERIZATION OF HEAT SHOCK PROTEIN, Thomas Elthon, Adrian A. Lund, Dinakar Bhattramakki, and David Rhoads

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Chlamydomonas reinhardtii selenocysteine tRNA [Ser]Sec, Mahadev Rao, Bradley A. Carlson, Sergey V. Novoselov, Donald P. Weeks, Vadim Gladyshev, and Dolph L. Hatfield

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United States Patent Application Publication: MAIZE CHLOROPLAST PROTEIN SYNTHESIS ELONGATION FACTORS AND METHODS OF USE FOR SAME, Zoran Ristic, Shailendra K. Bhadula, Genping Yang, Thomas Elthon, and Jeffrey E. Habben

2002

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Folate synthesis in plants: The first step of the pterin branch is mediated by a unique bimodular GTP cyclohydrolase I, Gilles J. C. Basset, Eoin P. Quinlivan, Michael J. Ziemak, Rocío Díaz de la Garza, Markus Fischer, Susi Schiffmann, Adelbert Bacher, Jesse F. Gergory III, and Andrew D. Hanson

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Pyruvate,Orthophosphate Dikinase in Leaves and Chloroplasts of C3 Plants Undergoes Light-/Dark- Induced Reversible Phosphorylation, Chris J. Chastain, Jason P. Fries, Julie A. Vogel, Christa L. Randklev, Adam P. Vossen, Sharon K. Dittmer, Erin E. Watkins, Lucas J. Fiedler, Sarah A. Wacker, Katherine Meinhover, Gautam Sarath, and Raymond Chollet

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United States Patent Application Publication: DOWN-REGULATION OF SINGLE GENES AND SIMULTANEOUS DOWN-REGULATION OF MULTIPLE GENES BY NUCLEAR LOCALIZATION OF RNA TRANSCRIPTS, Thomas E. Clemente, Paul E. Staswick, and Tony L. Buhr

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United States Patent Application Publication: ISOLATION AND CHARACTERIZATION OF HEAT SHOCK PROTEIN, Thomas Elthon, Adrian A. Lund, Dinakar Bhattramakki, and David Rhoads

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United States Patent Application Publication: COUNTER SELECTION STRATEGY FOR GRAM-NEGATIVE BACTERIA, Stephen K. Farrand, Paul E. Staswick, and Thomas E. Clemente

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Genomewide identification of Pseudomonas syringae pv.tomato DC3000 promoters controlled by the HrpL alternative sigma factor, Derrick E. Fouts, Robert B. Abramovitch, James R. Alfano, Angela M. Baldo, C. Robin Buell, Samuel Cartinhour, Arn K. Chatterjee, Mark D'Ascenzo, Michelle L. Gwinn, Sondra G. Lazarowitz, Na-Chun Lin, Gregory B. Martin, Amos H. Rehm, David J. Schneider, Karin V. van Dijk, Xiaoyan Tang, and Alan Collmer

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Suppressors of transcriptional transgenic silencing in Chlamydomonas are sensitive to DNA-damaging agents and reactivate transposable elements, Byeong-Ryool Jeong, Dancia Wu-Scharf, Chaomei Zhang, and Heriberto D. Cerutti

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Characterization of the Aspergillus nidulans 14-3-3 homologue, ArtA, Peter R. Kraus, Amy F. Hoffman, and Steven D. Harris

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Ornithine Decarboxylase Encoded by Chlorella Virus PBCV-1, Tiara A. Morehead,; James R. Gurnon; Byron Adams; Kenneth Nickerson; Lisa A. Fitzgerald; and James L. Van Etten

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Selenoproteins and selenocysteine insertion system in the model plant cell system, Chlamydomonas reinhardtii, Sergey V. Novoselov, Mahadev Rao, Natalia V. Onoshko, Huijun Zhi, Gregory V. Kryukov, Youbin Xiang, Donald P. Weeks, Dolph A. Hatfield, and Vadim Gladyshev

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Functional Characterization and Localization of the Aspergillus nidulan Formin SEPA, Kathryn E. Sharpless and Steven D. Harris

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A WD40-repeat containing protein, similar to a fungal co-repressor, is required for transcriptional gene silencing in Chlamydomonas, Chaomei Zhang, Dancia Wu-Scharf, Byeong-Ryool Jeong, and Heriberto D. Cerutti

2001

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United States Patent: ISOLATION AND CHARACTERIZATION OF GENE ENCODING MAIZE HEAT SHOCK PROTEIN, Thomas Elthon, Adrian A. Lund, Dinakar Bhattramakki, and David Rhoads

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Structure and Temporal Dynamics of Populations within Wheat Streak Mosaic Virus Isolates, Jeffrey S. Hall, Roy C. French, Thomas Jack Morris, and Drake C. Stenger

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Septum formation in Aspergillus nidulans, Steven D. Harris

2000

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The Pseudomonas syringae Hrp pathogenicity island has a tripartite mosaic structure composed of a cluster of type III secretion genes bounded by exchangeable effector and conserved effector loci that contribute to parasitic fitness and pathogenicity in plants, James R. Alfano, Amy O. Charkowski, Wen-Ling Deng, Jorge L. Badel, Tanja Petnicki- Ocwieja, Karin van Dijk, and Alan Collmer

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A plant virus vector for systemic expression of foreign genes in cereals, Il-Ryong Choi, Drake C. Stenger, Thomas Jack Morris, and Roy C. French

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Pseudomonas syringae Hrp type III secretion system and effector proteins, Alan Collmer, Jorge L. Badel, Amy O. Charkowski, Wen-Ling Deng, Derrick E. Fouts, Adela R. Ramos, Amos H. Rehm, Deborah M. Anderson, Olaf Schneewind, Karin V. van Dijk, and James R. Alfano

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The open reading frame 5A of foxtail mosaic virus is expressed in vivo and is dispensable for systemic infection, N.L. Robertson, Roy C. French, and Thomas Jack Morris

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Transgene and Transposon Silencing in Chlamydomonas reinhardtii by a DEAH-Box RNA Helicase, Dancia Wu-Scharf, Byeong-Ryool Jeong, Chaomei Zhang, and Heriberto D. Cerutti

1999

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Morphogenesis is coordinated with nuclear division in germinating Aspergillus nidulans conidiospores, Steven D. Harris

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The Avr (Effector) Proteins HrmA (HopPsyA) and AvrPto Are Secreted in Culture from Pseudomonas syringae Pathovars via the Hrp (Type III) Protein Secretion System in a Temperature- and pH-Sensitive Manner, Karin V. van Dijk, Derrick E. Fouts, Amos H. Rehm, Angela R. Hill, Alan Collmer, and James R. Alfano

1998

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The Pseudomonas syringae pv. tomato HrpW Protein Has Domains Similar to Harpins and Pectate Lyases and Can Elicit the Plant Hypersensitive Response and Bind to Pectate, Amy O. Charkowski, James R. Alfano, Gail Preston, Jing Yuan, Sheng Yang He, and Alan Collmer

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RHODOSPIRILLUM RUBRUM POLY-β-HYDROXYALKANOATE SYNTHASE, Thomas E. Clemente, Ganish M. Kishore, Timothy A. Mitsky, and David M. Stark

1997

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A Eubacterial Gene Conferring Spectinomycin Resistance on Chlamydomonas reinhardtii: Integration into the Nuclear Genome and Gene Expression, Heriberto D. Cerutti, A. M. Johnson, N. W. Gillham, and J. E. Boynton

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Epigenetic Silencing of a Foreign Gene in Nuclear Transformants of Chlamydomonas, Heriberto D. Cerutti, Anita M. Johnson, Nicholas W. Gillham, and John E. Boynton

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The Aspergillus nidulans sepA gene encodes an FH1/2 protein involved in cytokinesis and the maintenance of cellular polarity, Steven D. Harris, Lisbeth Hamer, Kathryn E. Sharpless, and John E. Hamer

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CDNA ENCODING A RECA HOMOLOG IN EUKARYOTES, Andre Jagendorf and Heriberto D. Cerutti

1996

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Phosphoenolpyruvate Carboxylase: A Ubiquitous, Highly Regulated Enzyme in Plants, Raymond Chollet, Jean Vidal, and Marion H. O'Leary

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A cytoplasmic male sterility-associated mitochondrial protein causes pollen disruption in transgenic tobacco, Shichuan He, Andre R. Abad, Stanton B. Gelvin, and Sally Ann MacKenzie

1995

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Movement of DNA across the chloroplast envelope: Implications for the transfer of promiscuous DNA, Heriberto D. Cerutti and André Jagendorf

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Inhibition of Chloroplast DNA Recombination and Repair by Dominant Negative Mutants of Escherichia coli RecA, Heriberto D. Cerutti, Anita M. Johnson, John E. Boynton, and Nicholas W. Gillham

1994

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Recombination between defective tombusvirus RNAs generates functional hybrid genomes, K. Andrew White and Thomas Jack Morris

1993

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Treatment of Pea (Pisum sativum L.) Protoplasts with DNA-Damaging Agents Induces a 39-Kilodalton Chloroplast Protein Immunologically Related to Escherichia coli RecA, Heriberto D. Cerutti, H. Z. Ibrahim, and A. T. Jagendorf

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DNA Strand-Transfer Activity in Pea (Pisum sativum L.) Chloroplasts, Heriberto D. Cerutti and A. T. Jagendorf

1992

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A Homolog of Escherichia coli RecA Protein in Plastids of Higher Plants, H. Osman, P. Grandoni, Heriberto D. Cerutti, and André Jagendorf

1988

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Mitochondrial DNA rearrangement associated with fertility restoration and cytoplasmic reversion to fertility in cytoplasmic male sterile Phaseolus vulgaris L., Sally Ann MacKenzie, D. R. Pring, M. J. Bassett, and C. D. Chase