2014

Kellogg Soil Survey Laboratory Methods Manual

Northern Great Plains Research Laboratory Integrator February 2014

Northern Great Plains Research Laboratory Integrator July 2014

Long-rotation sugarcane in Hawaii sustains high carbon accumulation and radiation use efficiency in 2nd year of growth, Ray G. Anderson, Rebecca Tirado-Corbalá, Dong Wang, and James E. Ayars

Crop Residue Harvest Economics: An Iowa and North Dakota Case Study, David W. Archer, Douglas L. Karlen, and Mark A. Liebig

Potential involvement of Aspergillus flavus laccases in peanut invasion at low water potential, R. S. Arias, V. S. Sobolev, V. A. Orner, P. M. Dang, and M. C. Lamb

Potential involvement of Aspergillus flavus laccases in peanut invasion at low water potential, R. S. Arias, V. S. Sobolev, V. A. Orner, P. M. Dang, and M. C. Lamb

Rice (Oryza) hemoglobins [version 2; peer review: 2 approved], Raúl Arredondo-Peter, Jose F. Moran, and Gautam Sarath

Residual Efficacy of Chlorfenapyr for Control of Stored-Product Psocids (Psocoptera), Christos G. Athanassiou, NIckolas G. Kavallieratos, Frank H. Arthur, and James E. Throne

Competition among Species of Stored-Product Psocids (Psocoptera) in Stored Grain, Christos G. Athanassiou, Nickolas G. Kavallieratos, James E. Throne, and Christos T. Nakas

The biophysical link between climate, water, and vegetation in bioenergy agro-ecosystems, Justin E. Bagley, Sarah C. Davis, Matei Georgesu, Mir Zaman Hussain, Jesse Miller, Stephen W. Nesbitt, Andy VanLoocke, and Carl J. Bernacchi

Draft Genome Sequence of a Mycobacterium avium Complex Isolate from a Broadbill Bird, John Bannantine, Darrell O. Bayles, Suelee Robbe-Austerman, Angela M. Burrell, and Judith R. Stabel

Complete Genome Sequence of Mycobacterium avium subsp. paratuberculosis, Isolated from Human Breast Milk, John Bannantine, Lingling Li, Michael M. Mwangi, Rebecca Cote, Juan Antonio Raygoza Garay, and Vivek Kapur

LLWR Techniques for Quantifying Potential Soil Compaction Consequences of Crop Residue Removal, Joseph G. Benjamin and Douglas Karlen

Development of Sustainable Corn Stover Harvest Strategies for Cellulosic Ethanol Production, Stuart Birrell, Douglas Karlen, and Adam Wirt

Microsporidia Biological Control Agents and Pathogens of Beneficial Insects, Susan Bjornson and David Oi

Modeled Impacts of Cover Crops and Vegetative Barriers on Corn Stover Availability and Soil Quality, Ian J. Bonner, David J. Muth Jr., Joshua B. Koch, and Douglas Karlen

Widespread movement of invasive cattle fever ticks (Rhipicephalus microplus) in southern Texas leads to shared local infestations on cattle and deer, Joseph D. Busch, Nathan E. Stone, Roxanne Nottingham, Ana Araya-Anchetta, Jillian Lewis, Christian Hochhalter, John R. Giles, Jeffrey Gruendike, Jeanne Freeman, Greta Buckmeier, Deanna Bodine, Roberta Duhaime, Robert J. Miller, Ronald B. Davey, Pia U. Olafson, Glen A. Scoles, and David M. Wagner

Influence of Corn Residue Harvest Management on Grain, Stover, and Energy Yields, Keri B. Cantrell, Jeffrey M. Novak, James R. Frederick, Douglas Karlen, and Donald W. Watts

Soils of temperate rainforests of the North American Pacific Coast, Dunbar N. Carpenter, James G. Bockheim, and Paul F. Reich

Disentangling root responses to climate change in a semiarid grassland, Yolima Carrillo, Feike A. Dijkstra, Dan LeCain, Jack A. Morgan, Dana Blumenthal, Sarah Waldron, and Elise Pendall

Surrogate species selection for assessing potential adverse environmental impacts of genetically engineered insect-resistant plants on non-target organisms, Keri Carstens, Bonifacio Cayabyab, Adinda De Schrijver, Patricia G. Gadaleta, Richard L. Hellmich, Jörg Romeis, Nicholas Storer, Fernando H. Valicente, and Michael Wach

Selection for Biomass Yield in Upland, Lowland, and Hybrid Switchgrass, Michael D. Casler and Kenneth P. Vogel

Transcript analysis and expression profiling of three heat shock protein 70 genes in the ectoparasitoid Habrobracon hebetor (Hymenoptera: Braconidae), Hao-Liang Chen, Hong-Yu Zhang, James E. Throne, and Kun Yan Zhu

Artificial diets used in mass production of the New World screwworm, Cochliomyia hominivorax, H Chen, M F. Chaudhury, A Sagel, P L. Philips, and S R. Skoda

TWO-SOURCE ENERGY BALANCE MODEL TO CALCULATE E, T, AND ET: COMPARISON OF PRIESTLEY-TAYLOR AND PENMAN-MONTEITH FORMULATIONS AND TWO TIME SCALING METHODS, Paul D. Colaizzi, Nurit Agam, Judy A. Tolk, Steven R. Evett, Terry A. Howell, Prasanna H. Gowda, Susan A. O'Shaughnessy, William P. Kustas, and Martha C. Anderson

Predicting phosphorus dynamics in complex terrains using a variable source area hydrology model, Amy S. Collick, Daniel R. Fuka, Peter J.A. Kleinman, Anthony R. Buda, Jennifer L. Weld, Mike J. White, Tamie L. Veith, Ray B. Bryant, Carl H. Bolster, and Zachary M. Easton

Distribution of three psocid species (Psocoptera: Liposcelididae) in different moisture gradients in wheat, John Diaz-Montano, James F. Campbell, Paul W. Flinn, and James E. Throne

Evaluation of Potential Attractants for Liposcelis bostrychophila (Psocoptera: Liposcelididae), John Diaz-Montano, James F. Campbell, Thomas W. Phillips, and James E. Throne

The use of electromagnetic induction techniques in soils studies, James A. Doolittle and Eric C. Brevik

Invited review: overview of new traits and phenotyping strategies in dairy cattle with a focus on functional traits, C. Egger-Danner, J. B. Cole, J. E. Pryce, N. Gengler, B. Heringstad, A. Bradley, and K. F. Stock

Nucleotide polymorphism and copy number variant detection using exome capture and next-generation sequencing in the polyploid grass Panicum virgatum, Joseph Evans, Jeongwoon Kim, Kevin L. Childs, Briaenne Vaillancourt, Emily Crisovan, Aruna Nandety, Daniel J. Gerhardt, Todd A. Richmond, Jeffery A. Jeddeloh, Shawn M. Kaeppler, Michael D. Casler, and C Robin Buell

Modeling weather and stocking rate effects on forage and steer production in northern mixed-grass prairie, Q. X. Fang, A. A. Andales, J. D. Derner, L. R. Ahuja, L. Ma, P. N. S. Bartling, J. L. Reeves, and Z. Qi

Whole genome sequencing and phylogenetic analysis of Bluetongue virus serotype 2 strains isolated in the Americas including a novel strain from the western United States, Natasha N. Gaudreault, Christie E. Mayo, Dane C. Jasperson, Beate M. Crossley, Richard E. Breitmeyer, Donna J. Johnson, Eileen N. Ostlund, N James MacLachlan, and William C. Wilson

Competition between the filth fly parasitoids Muscidifurax raptor and M. raptorellus (Hymenoptera: Pteromalidae), C J. Geden, D M. Johnson, P E. Kaufman, and C K. Boohene

Starch Plastic Packaging and Agriculture Applications, Gregory M. Glenn, William Orts, Syed Imam, Bor-Sen Chiou, and Delilah F. Wood

Determination of the Structure and Catalytic Mechanism of Sorghum bicolor Caffeic Acid O-Methyltransferase and the Structural Impact of Three brown midrib12 Mutations, Abigail R. Green, Kevin M. Lewis, John T. Barr, Jeffrey P. Jones, Fachuang Lu, John Ralph, Wilfred Vermerris, Scott E. Sattler, and ChulHee Kang

Performance of a Temperate-Zone Channel Catfish Biofloc Technology Production System During Winter, Bartholomew W. Green

Effect of Stocking Biomass on Solids, Phytoplankton Communities, Common Off-Flavors, and Production Parameters in a Channel Catfish Biofloc Technology Production System, Bartholomew W. Green, Kevin K. Schrader, and Peter W. Perschbacher

Ecotypes of an ecologically dominant prairie grass (Andropogon gerardii) exhibit genetic divergence across the U.S. Midwest grasslands’ environmental gradient, Miranda M. Grey, Paul St. Amand, Nora M. Bello, Matthew B. Galliart, Mary Knapp, Karen A. Garrett, Theodore J. Morgan, Sarah G. Baer, Brian R. Maricle, Eduard D. Akhunov, and Loretta C. Johnson

Lymphoproliferative and Gamma Interferon Responses to Stress- Regulated Mycobacterium avium subsp. Gurungparatuberculosis Recombinant Proteins, Ratna B. Gurung, Douglas J. Begg, Auriol C. Purdie, Kumudika de Silva, John Bannantine, and Richard J. Whittington

Soil Greenhouse Gas Emissions in Response to Corn Stover Removal and Tillage Management Across the US Corn Belt, Virginia L. Jin, John M. Baker, Jane M.F. Johnson, Douglas Karlen, R. Michael Lehman, Shannon L. Osborne, Thomas J. Sauer, Diane E. Stott, Gary E. Varvel, Rodney T. Venterea, Marty R. Schmer, and Brian J. Wienhold

Crop Residue Mass Needed to Maintain Soil Organic Carbon Levels: Can It Be Determined?, Jane M. F. Johnson, Jeff M. Novak, Gary E. Varvel, Diane E. Stott, Shannon L. Osborne, Douglas Karlen, John A. Lamb, John Baker, and Paul R. Adler

Enhanced expression of codon optimized Mycobacterium avium subsp. paratuberculosis antigens in Lactobacillus salivarius, Christopher D. Johnston, John Bannantine, Rodney Govender, Lorraine Endersen, Daniel Pletzer, Helge Weingart, Aidan Coffey, Jim O’Mahony, and Roy D. Sleator

Crop Residues, Douglas L. Karlen and David R. Huggins

Crop Residue Considerations for Sustainable Bioenergy Feedstock Supplies, Douglas L. Karlen and Jane M.F. Johnson

Soil and Water Conservation: Our History and Future Challenges, Douglas Karlen and Gary A. Peterson

Surface soil quality in five midwestern cropland Conservation Effects Assessment Project watersheds, Douglas Karlen, Diane E. Stott, Cynthia A. Cambardella, Robert J. Kremer, and Greg W. McCarty

Selected Global Examples of Cellulosic Cropping System Trends, Douglas Karlen, Marcelo Valadares Galdos, Sarita Candida Rabelo, Henrique Continho Junqueira Franco, Antonio Bonomi, Jihong Li, Shi-Zhong Li, Jaya Shankar Tumuluru, and Leslie Ovard

Poplar, Andrzej Klasa and Douglas Karlen

STEVENALTICA, A NEW GENUS OF MOSS AND LEAF-LITTER INHABITING FLEA BEETLES FROM BOLIVIA (COLEOPTERA: CHRYSOMELIDAE: GALERUCINAE: ALTICINI)., Alexander S. Konstantinov, Adelita M. Linzmeier, and Vilma P. Savini

Screening of Mycobacterium avium subsp. paratuberculosis mutants for attenuation in a bovine monocyte-derived macrophage model, Elise A. Lamont, Adel M. Talaat, Paul M. Coussens, John Bannantine, Yrjo T. Grohn, Robab Katani, Ling-ling Li, Vivek Kapur, and Srinand Sreevatsan

Classification of the waxy condition of durum wheat by near infrared reflectance spectroscopy using wavelets and a genetic algorithm, Barry K. Lavine, Nikhil Mirjankar, and Stephen Delwiche

Classification of the waxy condition of durum wheat by near infrared reflectance spectroscopy using wavelets and a genetic algorithm, Barry K. Lavine, Nikhil Mirjankar, and Stephen Delwiche

Microclimatic Performance of a Free-Air Warming and CO2 Enrichment Experiment in Windy Wyoming, USA, Daniel LeCain, David Smith, Jack Morgan, Bruce A. Kimball, Elise Pendall, and Franco Miglietta

Grazing Management, Season, and Drought Contributions to Near-Surface Soil Property Dynamics in Semiarid Rangeland, M. A. Liebig, S. L. Kronberg, J. R. Hendrickson, and J. R. Gross

Adaptations between Ecotypes and along Environmental Gradients in Panicum virgatum, David B. Lowry, Kathrine D. Behrman, Paul Grabowski, Geoffrey P. Morris, James R. Kiniry, and Thomas E. Juenger

Adaptations between Ecotypes and along Environmental Gradients in Panicum virgatum*, David B. Lowry, Kathrine D. Behrman, Paul Grabowski, Geoffrey P. Morris, Jim R. Kiniry, and Thomas Juenger

Effects of tillage and application rate on atrazine transport tosubsurface drainage: Evaluation of RZWQM using a six-yearfield study, R. W. Malone, B. T. Nolan, L. Ma, R. S. Kanward, C. Pederson, and P. Heilman

Metolachlor metabolite (MESA) reveals agricultural nitrate-N fate and transport in Choptank River watershed, Gregory McCarty, Cathleen Hapeman, Clifford Rice, Dean Hively, Laura McConnell, Ali Sadeghi, Megan Lang, David Whitall, Krystyna Bialek, and Peter Downey

Effects of including saponins (Micro-Aid®) on intake, rumenfermentation and digestibility in steers fed low-qualityprairie hay, C P. McMurphy, A J. Sexten, G L. Mourer, E D. Sharman, S J. Trojan, M J. Rincker, W K. Coblentz, and D L. Lalman

Contribution of surface leaf-litter breakdown and forest composition to benthic oxygen demand and ecosystem respiration in a South Georgia blackwater river, Andrew S. Mehring, Kevin A. Kuehn, Cynthia J. Tant, Catherine M. Pringle, R. Lowrance, and George Vellidis

Contribution of surface leaf-litter breakdown and forest composition to benthic oxygen demand and ecosystem respiration in a South Georgia blackwater river, Andrew S. Mehring, Kevin A. Kuehn, Cynthia J. Tant, Catherine M. Pringle, R. Lowrance, and George Vellidis

A phage-displayed peptide recognizing porcine aminopeptidase N is a potent small molecule inhibitor of PEDV entry, Fandan Meng, Siqingaowa Suo, Dante S. Zarlenga, Yingying Cong, Xiaowei Ma, Qiong Zhao, and Xiaofeng Ren

Switchgrass, Robert B. Mitchell, D. K. Lee, and Mitchael Casler

Distribution of Structural Carbohydrates in Corn Plants Across the Southeastern USA, Spyridon Mourtzinis, Keri B. Cantrell, Francisco J. Arriaga, Kipling S. Balkcom, Jeff M. Novak, James R. Frederick, and Douglas Karlen

The Molecular Basis of Peanut Allergy, Geoffrey A. Mueller, Soheila J. Maleki, and Lars C. Pedersen

Inter-relationships of cotton plant height, canopy width, ground coverand plant nitrogen status indicators, F. M. Muharam, K. F. Bronson, S. J. Maas, and G. L. Ritchie

Effects of including saponins (Micro-Aid®) on intake, rumenfermentation and digestibility in steers fed low-qualityprairie hay, C. P. Murphy, A. J. Sexten, G. L. Mourer, E. D. Sharman, S. J. Trojan, M. J. Rinker, W. K. Coblentz, and D. L. Lalman

Biology and Management of Psocids Infesting Stored Products, Manoj K. Nayak, Patrick J. Collins, James E. Throne, and Jin-Jun Wang

Searching for synergism in dryland cropping systems in the central Great Plains, David C. Nielsen and Merle F. Vigil

Soil Chemical Insights Provided through Vibrational Spectroscopy, Sanjai J. Parikh, Keith W. Goyne, Andrew J. Margenot, Fungai N.D. Mukome, and Francisco J. Calderón

Two Soybean Plant Introductions Display Slow Leaf Wilting and Reduced Yield Loss under Drought, S. M. Pathan, J.-D Lee, D. A. Sleper, F. B. Fritschi, R. E. Sharp, T. E. Carter Jr., R. L. Nelson, C. A. King, W. T. Schapaugh, M. R. Ellersieck, H. T. Nguyen, and J. G. Shannon

Effect of Abiotic Factors on Initiation of Red Flour Beetle (Coleoptera: Tenebrionidae) Flight, Joel Perez-Mendoza, James F. Campbell, and James E. Throne

Beef Species Symposium: Potential limitations of NRC in predicting energetic requirements of beef females within western U.S. grazing systems, M. K. Petersen, C. J. Mueller, J. T. Mulliniks, A. J. Roberts, T. DelCurto, and R. C. Waterman

Use of robust multivariate linear mixed models for estimation of genetic parameters for carcass traits in beef cattle, S. O. Peters, K. Kizilkaya, D. J. Garrick, R. L. Fernando, E. J. Pollak, R. Mark Enns, M. De Donato, O. O. Ajayi, and I. G. Imumorin

Nutrient composition of selected traditional United States Northern Plains Native American plant foods, Katherine M. Phillips, Pamela R. Pehrsson, Wanda W. Agnew, Angela J. Scheett, Jennifer R. Follett, Henry C. Lukaski, and Kristine Y. Patterson

Nutrient composition of selected traditional United States Northern Plains Native American plant foods, Katherine M. Phillips, Pamela R. Pehrsson, Wanda W. Agnew, Angela J. Scheett, Jennifer R. Follett, Henry C. Lukaski, and Kristine Y. Patterson

MAKING TIME FOR AGRICULTURAL AND LIFE SCIENCE RESEARCH: TECHNICAL CHANGE AND PRODUCTIVITY GAINS, Daniel L. Prager, Jeremy D. Foltz, and Bradford L. Barham

Ostertagia ostertagi macrophage migration inhibitory factor is present in all developmental stages and may cross-regulate host functions through interaction with the host receptor, Guanggang Qu, Raymond Fetterer, Lin Leng, Xin Du, Dante Zarlenga, Zhiqiang Shen, Wenyu Han, Richard Bucala, and Wenbin Tuo

Seasonal weather influences on yearling beef steer productionin C3-dominated Northern Great Plains rangeland, Justin L. Reeves, Justin D. Derner, Matt A. Sanderson, John R. Hendrickson, Scott L. Kronberg, Mark P. Petersen, and Lance T. Vermeire

Elevated CO2 further lengthens growing season under warming conditions, Melissa Reyes-Fox, Heidi Steltzer, M. J. Trlica, Gregory S. McMaster, Allan A. Andales, Dan R. LeCain, and Jack A. Morgan

Biochar impact on Midwestern Mollisols and maize nutrient availability, Natalia Rogovska, David Laird, Samuel J. Rathke, and Douglas Karlen

Biochemical acclimation, stomatal limitation and precipitationpatterns underlie decreases in photosynthetic stimulation of soybean(Glycine max) at elevated [CO2] and temperatures under fully open airfield conditions, David M. Rosenthala, Ursula M. Ruiz-Vera, Matthew H. Siebers, Sharon B. Gray, Carl J. Bernacchi, and Donald R. Ort

A new simple method for labeling field crops with stable isotope tracers, Aaron J. Saathoff, Soundararajan Madhavan, Kenneth P. Vogel, Christian M. Tobias, Paul G. Twigg, and Gautam Sarath

Energy Potential and Greenhouse Gas Emissions from Bioenergy Cropping Systems on Marginally Productive Cropland, Marty R. Schmer, Kenneth P. Vogel, Gary E. Varvel, Ronald F. Follett, Robert B. Mitchell, and Virginia L. Jin

Crop Damage from Sclerotinia Crown Rot and Risk Factors in Pyrethrum, Jason B. Scott, David H. Gent, Sarah J. Pethybridge, Tim Groom, and Frank S. Hay

Spatiotemporal Characterization of Sclerotinia Crown Rot Epidemics in Pyrethrum, Jason B. Scott, David H. Gent, Sarah J. Pethybridge, and Frank S. Hay

Evaluation of Three Breeding Cycles for Seedling Weight of Switchgrass, Big Bluestem, and Indiangrass, Boingotlo Sebolai and Kenneth P. Vogel

Phenotypic and Transcriptional Analysis of Divergently Selected Maize Populations Reveals the Role of Developmental Timing in Seed Size Determination, Rajandeep Sekhon, Candice Hirsch, Kevin L. Childs, Matthew Breitzman, Paul Kell, Susan Duvick, Edgar Spalding, C. Robin Buell, Natalia de Leon, and Shawn Kaeppler

Phenotypic and Transcriptional Analysis of Divergently Selected Maize Populations Reveals the Role of evelopmental Timing in Seed Size Determination, Rajandeep S. Sekhon, Candice N. Hirsh, Kevin L. Childs, Matthew W. Breitzman, Paul Kell, Susan Duvick, Edgar P. Spalding, C. Robin Buell, Natalia de Leon, and Shawn M. Kaeppler

Combined effects of phosphorus nutrition and elevated carbon dioxide concentration on chlorophyll fluorescence, photosynthesis, and nutrient efficiency of cotton, Shardendu K. Singh and Vangimalla R. Reddy

Artificial diets used in mass production of the New World screwworm, Cochliomyia hominivorax, S. R. Skoda, H. Chen, M. F. Chaudhurry, A. Sagel, and P. L. Phillips

Comparison of different MODIS data product collections over an agricultural area, Alan J. Stern, Paul C. Doraiswamy, and E. Raymond Hunt Jr.

Nitrogen and harvest effects on soil properties under rainfed switchgrass and no-till corn over 9 years: implications for soil quality, Catherine E. Stewart, Ronald F. Follett, Elizabeth G. Pruessner, Gary E. Varvel, Kenneth P. Vogel, and Robert B. Mitchell

Exploring integrated crop–livestock systems in different ecoregions ofthe United States, R Mark Sulc and Alan J. Franzluebbers

Exploring integrated crop–livestock systems in different ecoregions ofthe United States, R. Mark Sulc and Alan J. Franzluebbers

Variation in the fumonisin biosynthetic gene cluster in fumonisin-producing and nonproducing black aspergilli, Antonia Susca, Robert H. Proctor, Robert A. E. Butchko, Miriam Haidukowski, Gaetano Stea, Antonio Logrieco, and Antonio Moretti

Litters of photosynthetically divergent grasses exhibit differential metabolic responses to warming and elevated CO2, Vidya Suseela, Daniella Triebwasser-Freese, Nora Linscheid, Jack A. Morgan, and Nishanth Tharayil

Identification of a Fourth Haplotype of Bactericera cockerelli (Hemiptera: Triozidae) in the United States, Kylie D. Swisher, Donald C. Henne, and James M. Crosslin