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2015

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Energy intensity and environmental impact metrics of the back-end separation of ethylene plant by thermodynamic analysis, Mahdi H. Alhajji and Yaşar Demirel

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Cyanobacterial Alkanes Modulate Photosynthetic Cyclic Electron Flow to Assist Growth under Cold Stress, Bertram M. Berla, Rajib Saha, Costas D. Maranas, and Himadri B. Pakrasi

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Breast Cancer/Stromal Cells Coculture on Polyelectrolyte Films Emulates Tumor Stages and miRNA Profiles of Clinical Samples, Amita Daverey, Karleen M. Brown, and Srivatsan Kidambi

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Physical Intimacy of Breast Cancer Cells with Mesenchymal Stem Cells Elicits Trastuzumab Resistance through Src Activation, Amita Daverey, Allison P. Drain, and Srivatsan Kidambi

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Global Proteomic Analysis Reveals an Exclusive Role of Thylakoid Membranes in Bioenergetics of a Model Cyanobacterium, Michelle Liberton, Rajib Saha, Jon M. Jacobs, Amelia Y. Nguyen, Marina A. Gritsenko, Richard D. Smith, David W. Koppenaal, and Himadri B. Pakrasi

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Chemical storage of wind energy by renewable methanol production: Feasibility analysis using a multi-criteria decision matrix, Michael J. Matzen, Mahdi H. Alhajji, and Yaşar Demirel

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Substrate stiffness regulates primary hepatocyte functions†, Vaishaali Natarajan, Eric J. Berglund, Dorothy X. Chen, and Srivatsan Kidambi

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Titanium Dioxide Nanoparticles Trigger Loss of Function and Perturbation of Mitochondrial Dynamics in Primary Hepatocytes, Vaishaali Natarajan, Christina L. Wilson, Stephen L. Hayward, and Srivatsan Kidambi

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Growth factor and ultrasound-assisted bioreactor synergism for human mesenchymal stem cell chondrogenesis, Sanjukta Guha Thakurta, Gaurav Budhiraja, and Anuradha Subramanian

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Quantifying Vitamin K-dependent Holoprotein Compaction caused by differential γ-carboxylation using HPSEC, Nicholas C. Vanderslice, Amanda S. Messer, Kanagasabai Vadivel, S. Paul Bajaj, Martin Phillips, Mostafa Fatemi, Weijie Xu, and William H. Velander

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Mitochondrial dysfunction and loss of glutamate uptake in primary astrocytes exposed to titanium dioxide nanoparticles, Christina L. Wilson, Vaishaali Natarajan, Stephen L. Hayward, Oleh Khalimonchuk, and Srivatsan Kidambi

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Engineering protein processing of the mammary gland to produce abundant hemophilia B therapy in milk, Jianguo Zhao, Weijie Xu, Jason W. Ross, Eric M. Walters, Stephen P. Butler, Jeff J. Whyte, Lindsey Kelso, Mostafa Fatemi, Nicholas C. Vanderslice, Keith Giroux, Lee D. Spate, Melissa S. Samuel, Cliff N. Murphy, Kevin D. Wells, Nick C. Masiello, Randall S. Prather, and William H. Velander

2014

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Convection enhanced delivery and in vivo imaging of polymeric nanoparticles for the treatment of malignant glioma, Giovanna M. Bernal, Michael J. LaRiviere, Nassir Mansour, Peter Pytel, Kirk E. Cahill, David J. Voce, Shijun Kang, Rubin Spretz, Ulrich Welp, Sandra E. Noriega, Luis Nunez, Gustavo F. Larsen, Ralph R. Weichselbaum, and Bakhtiar Yamini

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Information in Biological Systems and the Fluctuation Theorem, Yaşar Demirel

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Developing Defined and Scalable 3D Culture Systems for Culturing Human Pluripotent Stem Cells at High Densities, Yuguo Lei, Daeun Jeong, Jifang Xiao, and David V. Schaffer

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Assessing the Metabolic Impact of Nitrogen Availability Using a Compartmentalized Maize Leaf Genome-Scale Model, Margaret Simmons, Rajib Saha, Nardjis Amiour, Akhil Kumar, Lenaïg Guillard, Gilles Clément, Martine Miquel, Zhenni Li, Gregory Mouille, Peter J. Lea, Bertrand Hirel, and Costas D. Maranas

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Tactile Imaging of an Imbedded Palpable Structure for Breast Cancer Screening, Chieu Van Nguyen and Ravi Saraf

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Tactile Imaging of an Imbedded Palpable Structure for Breast Cancer Screening, Chieu Van Nguyen and Ravi F. Saraf

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Development of a Fatal Noncompressible Truncal Hemorrhage Model with Combined Hepatic and Portal Venous Injury in Normothermic Normovolemic Swine, Ujwal R. Yanala, Jason M. Johanning, Iraklis I. Pipinos, Gustavo F. Larsen, William H. Velander, and Mark A. Carlson

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Development of a Fatal Noncompressible Truncal Hemorrhage Model with Combined Hepatic and Portal Venous Injury in Normothermic Normovolemic Swine, Ujwal R. Yanala, Jason M. Johanning, Iraklis I. Pipinos, Gustavo F. Larsen, William H. Velander, and Mark A. Carlson

2013

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Synthetic biology of cyanobacteria: unique challenges and opportunities, Bertram M. Berla, Rajib Saha, Cheryl M. Immethun, Costas D. Maranas, Tae Seok Moon, and Himadri B. Pakras

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In vitro evaluation of PEGylated mesoporous MgFe2O4 magnetic nanoassemblies (MMNs) for chemo-thermal therapy, Sunil Kumar, Amita Daverey, Niroj Kumar Sahu, and Dhirendra Bahadur

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A fully defined and scalable 3D culture system for human pluripotent stem cell expansion and differentiation, Yuguo Lei and David V. Schaffer

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Mechanotransduction of Ultrasound is Frequency Dependent Below the Cavitation Threshold, Tobias M. Louw, Gaurav Budhiraja, Hendrik J. Viljoen, and Anuradha Subramanian

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New Potential Therapeutic Approach for the Treatment of B-Cell Malignancies Using Chlorambucil/ Hydroxychloroquine-Loaded Anti-CD20 Nanoparticles, Nelly Mezzaroba, Sonia Zorzet, Erika Secco, Stefania Biffi, Claudio Tripodo, Marco Calvaruso, Ramiro Mendoza-Maldonado, Sara Capolla, Marilena Granzotto, Ruben Spretz, Gustavo F. Larsen, Sandra Noriega, Marianna Lucafó, Eduardo Mansilla, Chiara Garrovo, Gustavo H. Marín, Gabriele Bai, Valter Gattei, Gabriele Pozzato, Luis Núñez, and Paolo Macor

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The Effect of Ultrasound Stimulation on the Cytoskeletal Organization of Chondrocytes Seeded In 3D Matrices, Sandra Noriega, Gulnara Hasanova, and Anuradha Subramanian

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Ultrasonic Bioreactor as a Platform for Studying Cellular Response, Anuradha Subramanian, Joseph A. Turner, Gaurav Budhiraja, Sanjukta Guha Thakurta, Nicholas P. Whitney, and Sai Siddhartha Nudurupati

2012

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Forced wave motion with internal and boundary damping, Tobias Louw, Scott Whitney, Anu Subramanian, and Hendrik J. Viljoen

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Ultra-soft 100 nm Thick Zero Poisson’s Ratio Film with 60% Reversible Compressibility, Chieu Nguyen, Vivek Maheshwari, and Ravi Saraf

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Remodeling of chromatin under low intensity diffuse ultrasound, Sandra Noriega, Gaurav Budhiraja, and Anuradha Subramanian

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Effect of Fiber Diameter on the Spreading, Proliferation and Differentiation of Chondrocytes on Electrospun Chitosan Matrices, Sandra E. Noriega, Gulnara I. Hasanova, Min Jeong Schneider, Gustavo F. Larsen, and Anuradha Subramanian

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Generalized ellipsometry in-situ quantification of organic adsorbate attachment within slanted columnar thin films, Keith B. Rodenhausen Jr., Daniel Schmidt, Tadas Kasputis, Angela K. Pannier, Eva Schubert, and Mathias Schubert

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Reconstruction and Comparison of the Metabolic Potential of Cyanobacteria Cyanothece sp. ATCC 51142 and Synechocystis sp. PCC 6803, Rajib Saha, Alex T. Verseput, Bertram M. Berla, Thomas J. Mueller, Himadri B. Pakrasi, and Costas D. Maranas

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Design and Characterization of Micro-Porous Hyaluronic Acid Hydrogels for in vitro Gene Transfer to mMSCs, Talar Tokatlian, Cynthia Cam, Shayne N. Siegman, Yuguo Lei, and Tatiana Segura

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Integrin-mediated mechanotransduction pathway of low-intensity continuous ultrasound in human chondrocytes, Nicholas P. Whitney, Allyson C. Lamb, Tobias M. Louw, and Anuradha Subramanian

2011

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INDUCTION OF TOLERANCE BY ORAL ADMINISTRATION OF FACTOR VIII AND TREATMENT OF HEMOPHILA, Oral Alpan, Tirumalai Kamala, Polly Matzinger, and William Hugold Velander

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PRODUCTION OF HIGH LEVELS OF TRANSGENC FACTOR IX WITHOUT GENE RESCUE, AND ITS THERAPEUTIC USES, Julian D. Cooper, William Hugold Velander, and Tanya K. O'Sickey

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POLY(PHENYLENE)-BASEDANION EXCHANGEMEMBRANE, Michael Hibbs, Christopher J. Cornelius, and Cy H. Fujimoto

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The spreading, migration and proliferation of mouse mesenchymal stem cells cultured inside hyaluronic acid hydrogels, Yuguo Lei, Shiva Gojgini, Jonathan Lam, and Tatiana Segura

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Hyaluronic Acid and Fibrin Hydrogels with Concentrated DNA/ PEI Polyplexes for Local Gene Delivery, Yuguo Lei, Maha Rahim, Quinn Ng, and Tatiana Segura

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Experimental Validation of a Fundamental Model for PCR Efficiency, Tobias M. Louw, Christine S. Booth, Elsje Pienaar, Joel R. TerMaat, Scott E. Whitney, and Hendrik J. Viljoen

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Could Metabolic Syndrome, Lipodystrophy, and Aging Be Mesenchymal Stem Cell Exhaustion Syndromes?, Eduardo Mansilla, Vanina Díaz Aquino, Daniel Zambón, Gustavo Horacio Marin, Karina Mártire, Gustavo Roque, Thomas Ichim, Neil H. Riordan, Amit Patel, Flavio Sturla, Gustavo F. Larsen, Rubén Spretz, Luis Núñez, Carlos Soratti, Ricardo Ibar, Michiel van Leeuwen, José María Tau, Hugo Drago, and Alberto Maceira

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Process Development and cGMP Manufacturing of a Recombinant Ricin Vaccine: an Effective and Stable Recombinant Ricin A-Chain Vaccine—RVEcTM, Michael M. Meagher, Javier G. Seravalli, S. Todd Swanson, Roger G. Ladd, Yogender P. Khasa, Mehmet Inan, Jay C. Harner, Scott K. Johnson, Kevin E. Van Cott, Changhong Lindsey, Robert Wannemacher, and Leonard A. Smith

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Using Thermally Coupled Reactive Distillation Columns in Biodiesel Production, Nghi Nguyen and Yaşar Demirel

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A Novel Biodiesel and Glycerol Carbonate Production Plant, Nghi T. Nguyen and Yasar Demirel

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Impact of Porogens on the Pore Characteristics of Zirconia Particles Made by Polymer-Induced Colloid Aggregation, Abhinandan Pattanayak and Anuradha Subramanian

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Functional factor VIII made with von Willebrand factor at high levels in transgenic milk, Steven W. Pipe, Hongzhi Miao, Stephen P. Butler, Jennifer Calcaterra, and William H. Velander

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Combined optical and acoustical method for determination of thickness and porosity of transparent organic layers below the ultra-thin film limit, Keith B. Rodenhausen Jr., Tadas Kasputis, Angela K. Pannier, J. Y. Gerasimov, R. Y. Lai, M. Solinsky, T. E. Tiwald, H. Wang, Amitabha Sarkar, Tino Hofmann, Natale J. Ianno, Mathias Schubert, and Jennifer Y. Gerasimov

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Zea mays iRS1563: A Comprehensive Genome-Scale Metabolic Reconstruction of Maize Metabolism, Rajib Saha, Patrick F. Suthers, and Costas D. Maranas

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Improved cellular infiltration into nanofibrous electrospun crosslinked gelatin scaffolds templated with micrometer sized polyethylene glycol fibers, Maciej Skotak, Jorge Ragusa, Daniela Gonzalez, and Anuradha Subramanian

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HYBRID MEMBRANE-PSA SYSTEM FOR SEPARATING OXYGEN FROMAR, Chad L. Staiger, Mark R. Vaughn, A. Keith Miller, and Christopher J. Cornelius

2010

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Efficiency of the Polymerase Chain Reaction, Christine S. Booth, Elsje Pienaar, Joel R. Termaat, Scott E. Whitney, Tobias M. Louw, and Hendrik J. Vijoen

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Nonequilibrium Thermodynamics Modeling of Coupled Biochemical Cycles in Living Cells, Yaşar Demirel

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High throughput quantification of N-glycans using one-pot sialic acid modification and matrix assisted laser desorption ionization time of flight mass spectrometry, Geun-Cheol Gil, Bryce Iliff, Ron Cerny, William H. Velander, and Kevin E. Van Cott

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, Geun-Cheol Gil, William H. Velander, and Kevin E. Van Cott

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Fed-batch fermentation of GM-CSF-producing glycoengineered Pichia pastoris under controlled specific growth rate, Pieter P. Jacobs, Mehmet Inan, Nele Festjens, Jurgen Haustraete, Annelies Van Hecke, Roland Contreras, Michael M. Meagher, and Nico Callewaert

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Propofol induces MAPK/ERK cascade dependant expression of cFos and Egr-1 in rat hippocampal slices, Srivatsan Kidambi, Joel Yarmush, Yevgeny Berdichevsky, Sangeetha Kamath, Wayne Fong, and Joseph SchianodiCola

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Incorporation of Active DNA/Cationic Polymer Polyplexes into Hydrogel Scaffolds, Yuguo Lei, Suxian Huang, Pooria Sharif-Kashani, Yong Chen, Pirouz Kavehpour, and Tatiana Segura

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Two and Three-dimensional Gene Transfer from Enzymatically Degradable Hydrogel Scaffolds, Yuguo Lei, Quinn K.T. Ng, and Tatiana Segura

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Retrofit of Distillation Columns in Biodiesel Production Plants, Nghi Nguyen and Yaşar Demirel

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A Model of Tuberculosis Transmission and Intervention Strategies in an Urban Residential Area, Elsje Pienaar, Aaron M. Fluitt, Scott E. Whitney, Alison G. Freifeld, and Hendrik J. Viljoen

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FABRICATION OF ULTRA LONG NECKLACE OF NANOPARTICLES, Ravi Saraf, Sanjun Niu, Vikas Berry, and Vivek Maheshwari

2009

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Thermodynamically coupled heat and mass flows in a reaction-transport system with external resistances, Yasar Demirel

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Propofol induces ERK-dependant expression of c-Fos and Egr-1 in neuronal cells, Srivatsan Kidambi, Joel Yarmush, Wayne Fong, Sangeetha Kamath, Joseph SchianodiCola, and Yaakov Nahmias

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Oxygen-mediated enhancement of primary hepatocyte metabolism, functional polarization, gene expression, and drug clearance, Srivatsan Kidambi, Rubin S. Yarmush, Eric Novik, Piyun CHao, Martin L. Yarmush, and Yaakov Nahmias

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DNA Delivery from Matrix Metalloproteinase Degradable Poly (ethylene glycol) Hydrogels to Mouse Cloned Mesenchymal Stem Cells, Yuguo Lei and Tatiana Segura

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Gene synthesis by integrated polymerase chain assembly and PCR amplification using a high-speed thermocycler, Joel R. TerMaat, Elsje Pienaar, Scott E. Whitney, Tarlan G. Mamedov, and Anuradha Subramanian

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A kinetic study of in vitro lysis of Mycobacterium smegmatis , William J. Valente, Elsje Pienaar, A. Fast, A. Fluitt, Scott E. Whitney, Robert J. Fenton, Raul G. Barletta, O. Chacon, and Hendrik J. Viljoen

2008

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Modeling of thermodynamically coupled reaction-transport systems, Yasar Demirel

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Thermodynamically Coupled Transport in Simple Catalytic Reactions, Yasar Demirel

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Analysis of the N-glycans of recombinant human Factor IX purified from transgenic pig milk, Geun-Cheol Gil, William H. Velander, and Kevin E. Van Cott

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Removal of Phenols with Encapsulated Horseradish Peroxidase in Calcium Alginate, Alemzadeh Iran and Siamak Nejati

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Tunable Resistive m-dPEG Acid Patterns on Polyelectrolyte Multilayers at Physiological Conditions: Template for Directed Deposition of Biomacromolecules, Srivatsan Kidambi, Christina Chan, and Ilsoon Lee

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Primary Neuron/Astrocyte Co-Culture on Polyelectrolyte Multilayer Films: A Template for Studying Astrocyte-Mediated Oxidative Stress in Neurons, Srivatsan Kidambi, Ilsoon Lee, and Christina Chan

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Polyelectrolyte mediated scalable synthesis of highly stable silver nanocubes in less than a minute using microwave irradiation, Subrata Kundu, Vivek C. Maheshwari, Sanjun Niu, and Ravi F. Saraf

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Web-based applications for building, managing and analysing kinetic models of biological systems, Dong-Yup Lee, Rajib Saha, Faraaz Noor Khan Yusufi, Wonjun Park, and IftekharA. Karimi

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Cell Adhesion On Surfaces Of Varying Topographies, Ilsoon Lee, Christina Chan, and Srivatsan Kidambi

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Self-Assembly of a Micrometers-Long One-Dimensional Network of Cemented Au Nanoparticles, Vivek C. Maheshwari, Jennifer Kane, and Ravi F. Saraf

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A Fundamental Study of the PCR Amplification of GC-rich DNA Templates, T. G. Mamedov, Elsje Pienaar, Scott E. Whitney, Joel R. TerMaat, G. Carvill, R. Goliath, Anuradha Subramanian, and Hendrik J. Viljoen

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Control On Platelet Adhesion And Activation Events By Selective And Specific Binding Of Plasma Protein On Peptide-Coupled Surface, Anuradha Subramanian and Sanjukta Guha-Thankruta

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Importance of Annealing Times in the PCR Amplification of GC-Rich Genes, Anuradha Subramanian, Tarlan Mamedov, Elsje Pinnear, and Hendrik J. Viljoen

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Characterization of a Polymer Surface With Sequentially Immobilized Proteins, Anuradha Subramanian, Tarlan Mammedov, and Karl E. Kador

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Effect Of Intermittent Applications Of Continuous Ultrasound Signal On The Morphology And Cytoskeletal Organization In Chondrocytes, Anuradha Subramanian, Sandra Noriega, and Gulnara Hasanova

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TRANSGENIC NONHUMAN MAMMALS PRODUCING FIBRINOGEN IN MILKAND METHODS OF PRODUCING FIBRIN, William H. Velander, William N. Drohan, Henryk Lubon, and John L. Johnson

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TREATMENT OF HEMOPHILIA WITH HUMAN FACTORIX PRODUCED IN MAMIMARY TISSUE OF TRANSGENIC MAMMALS, William H. Velander, William N. Drohan, Henryk Lubon, John L. Johnson, and Mary Ann H. Johnson

2007

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ORAL TREATMENT OF HEMOPHILIA, Oral Alpan, Tirumalai Kamala, Polly Matzinger, and William Hugold Velander

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Salt And pH Tunable Resist Patterns On Polyelectrolyte Multilayers, Christina Chan, Ilsoon Lee, and Srivatsan Kidambi

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SULFONATED POLYPHENYLENE POLYMERS, Christopher J. Cornelius, Cy H. Fujimoto, and Michael A. Hickner

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Thermoeconomics of seasonal latent heat storage system, Yaşar Demirel and H. Huseyin Ozturk

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Identification and characterization of calcium and manganese transporting ATPase (PMR1) gene of Pichia pastoris, Michael P. Dux and Mehmet Inan

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Ribosome kinetics and aa-tRNA competition determine rate and fidelity of peptide synthesis, Aaron Fluitt, Elsje Pienaar, and Hendrik J. Viljoen

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Detection of ultrathin biological films using vacuum ultraviolet spectroscopic ellipsometry, Dileep K. Goyal, Greg K. Pribil, John A. Woollam, and Anuradha Subramanian

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Effect of Hydrofluoric Acid in Oxidizing Acid Mixtures on the Hydroxylation of Silicon Surface, Sanjukta Guhathakurta and Anuradha Subramanian

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Cell Adhesion on Polyelectrolyte Multilayer Coated Polydimethylsiloxane Surfaces with Varying Topographies, Srivatsan Kidambi, Natasha Udpa, Stacey A. Schroeder, Robert Findlan, Ilsoon Lee, and Christina Chan

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Rational de novo gene synthesis by rapid polymerase chain assembly (PCA) and expression of endothelial protein-C and thrombin receptor genes, Tarlan G. Mamedov, Nisha V. Padhye, Hendrik J. Viljoen, and Anuradha Subramanian

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Selective assembly of nanoparticles on block copolymer by surface modification, Sanjun Niu and Ravi F. Saraf

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Developement of serum-free media in CHO-DG44 cells using a central composite statistical design, Ananth Parampalli, Kent M. Eskridge, Leonard Smith, Michael M. Meagher, M. C. Mowry, and Anuradha Subramanian

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The tri-frame model, Elsje Pienaar and Hendrik J. Viljoen

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Linear Tactile Nanodevice with Resolution on Par with Human Finger, Ravi F. Saraf, Vivek C. Maheshwari, and Chieu Nguyen

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Cell bank characterization and fermentation optimization for production of recombinant heavy chain C-terminal fragment of botulinum neurotoxin serotype E (rBoNTE(Hc): Antigen E) by Pichia pastoris, Jayanta Sinha, Mehmet Inan, Sarah Fanders, Shinichi Taoka, Mark Gouthro, Todd Swanson, Rick Barent, Ardis Barthuli, Bonnie M. Loveless, Leonard A. Smith, Theresa Smith, Ian Henderson, John Ross, and Michael M. Meagher