Food Science and Technology Department
Department of Food Science and Technology: Faculty Publications
2021
The Sulfur Microbial Diet and Risk of Colorectal Cancer by Molecular Subtypes and Intratumoral Microbial Species in Adult Men, Daniel R. Sikavi, Long H. Nguyen, Koichiro Haruki, Tomotaka Ugai, Wenjie Ma, Dong D. Wang, Kelsey N. Thompson, Yan Yan, Tobyn Branck, Jeremy E. Wilkinson, Naohiko Akimoto, Rong Zhong, Mai Chan Lau, Kosuke Mima, Keisuke Kosumi, Teppei Morikawa, Eric B. Rimm, Wendy S. Garrett, Jacques Izard, Yin Cao, Mingyang Song, Curtis Huttenhower, Shuji Ogino, and Andrew T. Chan
Comparative analysis of long noncoding RNAs in angiosperms and characterization of long noncoding RNAs in response to heat stress in Chinese cabbage, Xiaoming Song, Jingjing Hu, Tong Wu, Qihang Yang, Xuehuan Feng, Hao Lin, Shuyan Feng, Chunlin Cui, Ying Yu, Rong Zhou, Ke Gong, Tong Yu, Qiaoying Pei, and Nan Li
Comprehensive analysis of SSRs and database construction using all complete gene-coding sequences in major horticultural and representative plants, Xiaoming Song, Qihang Yang, Yun Bai, Ke Gong, Tong Wu, Tong Yu, Qiaoying Pei, Weike Duan, Zhinan Huang, Zhiyuan Wang, Zhuo Liu, Xi Kang, Wei Zhao, and Xiao Ma
Integration of the metabolome and transcriptome reveals the metabolites and genes related to nutritional and medicinal value in Coriandrum sativum, WU Tong, FENG Shu-yan, YANG Qi-hang, Preetida J. BHETARIYA, GONG Ke, CUI Chun-lin, SONG Jie, PING Xiao-rui, PEI Qiao-ying, YU Tong, and SONG Xiao-ming
Single-dose oral challenges to validate eliciting doses in children with cow’s milk allergy, Paul J. Turner, Yvonne M. d'Art, Bettina Duca, Sophia A. Chastell, Guadalupe Marco-Martin, Rosialzira N. Vera-Berrios, Olaya Alvarez, Raphaëlle Bazire, Pablo Rodríguez del Río, Marta Vazquez-Ortiz, Joseph L. Baumert, Ronald van Ree, Clare E.N. Mills, Montserrat Fernandez-Rivas, and Jonathan O.B. Hourihane
Effects of Ball Milling Combined With Cellulase Treatment on Physicochemical Properties and in vitro Hypoglycemic Ability of Sea Buckthorn Seed Meal Insoluble Dietary Fiber, Yulian Zhu, Xiaolong Ji, Michael Yuen, Tina Yuen, Hywel Yuen, Min Wang, Deandrae Smith, and Qiang Peng
Composition analysis and antioxidant activity evaluation of a high purity oligomeric procyanidin prepared from sea buckthorn by a green method, Yulian Zhu, Michael Yuen, Wenxia Li, Hywel Yuen, Min Wang, Deandrae Smith, and Qiang Peng
Nile tilapia (Oreochromis niloticus) fried in recycled palm oil: implications for nutrition and health, Aemiro Tadesse Zula, Derese Tamiru Desta, and Mary S. Willis
2020
Synthesis of novel naphthalene-heterocycle hybrids with potent antitumor, anti-inflammatory and antituberculosis activities, Mohamed Ahmed Abozeid, Aya Atef El-Sawi, Mohamed Abdelmoteleb, Hanem Awad, Marwa Mostafa Abdel-Aziz, Abdel-Rahman Hassan Abdel- Rahman, and El-Sayed Ibrahim El-Desoky
Point-of-Decision Prompts Increase Dietary Fiber Content of Consumers’ Food Choices in an Online Grocery Shopping Simulation, Kristina Arslain, Christopher Gustafson, and Devin J. Rose
Point-of-Decision Prompts Increase Dietary Fiber Content of Consumers’ Food Choices in an Online Grocery Shopping Simulation, Kristina Arslain, Christopher Gustafson, and Devin J. Rose
Expression profiling of human milk derived exosomal microRNAs and their targets in HIV‐1 infected mothers, Muhammad Atif Zahoor; McMaster University, Hamilton; Bethany M. Henrick; Chris P. Verschoor; Alash’le Abimiku; Sophia Osawe; and Kenneth L. Rosenthal
Identification of Simplified Microbial Communities That Inhibit Clostridioides difficile Infection through Dilution/Extinction, Jennifer M. Auchtung, Eva C. Preisner, James Collins, Armando I. Lerma, and Robert A. Britton
Desiccation tolerance in streptophyte algae and the algae to land plant transition: evolution of LEA and MIP protein families within the Viridiplantae, Burkhard Becker, Xuehuan Feng, Yanbin Yin, and Andreas Holzinger
The Trait Repertoire Enabling Cyanobacteria to Bloom Assessed through Comparative Genomic Complexity and Metatranscriptomics, Huansheng Cao, Yohei Shimura, Morgan M. Steffen, Zhou Yang, Jingrang Lu, Allen Joel, Landon Jenkins, Masanobu Kawachi, Yabin Yin, and Ferran Garcia-Pichel
Polyanhydride Nanoparticles Induce Low Inflammatory Dendritic Cell Activation Resulting in CD8+ T Cell Memory and Delayed Tumor Progression, Ross Darling, Sujata Senapati, John Christiansen, Luman Liu, Amanda E. Ramer-Tati, Balaji Narasimhan, and Michael Wannemuehler
Comparative Genome Analysis of Bifidobacterium longum subsp. infantis Strains Reveals Variation in Human Milk Oligosaccharide Utilization Genes among Commercial Probiotics, Rebbeca M. Duar, Giorgio Casaburi, Ryan D. Mitchell, Lindsey N.C. Scofield, Camila A. Ortega Ramirez, Daniela Barile, Bethany M. Henrick, and Steven A. Frese
Integrating the Ecosystem Services Framework to Define Dysbiosis of the Breastfed Infant Gut: The Role of B. infantis and Human Milk Oligosaccharides, Rebbeca M. Duar, Bethany M. Henrick, Giorgio Casaburi, and Steven A. Frese
Phytochemical characterization of ultrasound-processed sorghum sprouts for the use in functional foods, Sadia Hassan, Muhammad Imran, Muhammad Haseeb Ahmad, Muhammad Imran Khan, Changmou XU, Muhammad Kamran Khan, and Niaz Muhammad
A high-throughput LC-MS/MS method for the measurement of the bile acid/salt content in microbiome-derived sample sets, Thomas D. Horvath, Sigmund J. Haidacher, Kathleen M. Hoch, Jennifer M. Auchtung, and Anthony M. Haag
Integration of sodium hypochlorite pretreatment with co-immobilized microalgae/bacteria treatment of meat processing wastewater, Xinjuan Hu, Yulie Meneses, and Ashraf Aly Hassan
Stool microbiome, pH and short/branched chain fatty acids in infants receiving extensively hydrolyzed formula, amino acid formula, or human milk through two months of age, Car Reen Kok, Bradford Brabec, Maciej Chichlowski, Cheryl L. Harris, Nancy Moore, Jennifer L. Wampler, Jon Vanderhoof, Devin Rose, and Robert W. Hutkins
HumidOSH: A self-contained environmental chamber with controls for relative humidity and fan speed, Soon Kiat Lau and Jeyamkondan Subbiah
TDT Sandwich: An open source dry heat system for characterizing the thermal resistance of microorganisms, Soon Kiat Lau and Jeyamkondan Subbiah
Prebiotic-Induced Anti-tumor Immunity Attenuates Tumor Growth, Yan Li, Lisa Elmen, Igor Segota, Yibo Xian, Roberto Tinoco, Tinoco Feng, Yu Fujita, Rafael R. Segura Munoz, Robert J. Schmaltz, Linda M. Bradley, Amanda Ramer-Tait, Raphy Zarecki, Tao Long, Scott N. Peterson, and Ze’ev A. Ronai
Microbiota in vitro modulated with polyphenols shows decreased colonization resistance against Clostridioides difficile but can neutralize cytotoxicity, Aleksander Mahnic, Jennifer M. Auchtung, Nataša Poklar Ulrih, Robert A. Britton, and Maja Rupnik
Insights into the Genetic Architecture of Bran Friability and Water Retention Capacity, Two Important Traits for Whole Grain End-Use Quality in Winter Wheat, Sviatoslav Navrotskyi, Vikas Belamkar, P. Stephen Baenziger, and Devin J. Rose
Association between Sulfur-Metabolizing Bacterial Communities in Stool and Risk of Distal Colorectal Cancer in Men, Long H. Nguyen, Wenjie Ma, Dong D. Wang, Yin Cao, Himel Mallick, Teklu K. Gerbaba, Jason Lloyd-Price, Galeb Abu-Ali, A. Brantley Hall, Daniel Sikavi, David A. Drew, Raaj S. Mehta, Cesar Arze, Amit D. Joshi, Yan Yan, Tobyn Branck, Casey DuLong, Kerry L. Ivey, Shuji Ogino, Eric B. Rimm, Mingyang Song, Wendy S. Garrett, Jacques Izard, Cutis Huttenhower, and Andrew T. Chan
Comprehensive identification and analyses of the Hsf gene family in the whole-genome of three Apiaceae species, Qiaoying Pei, North China University of Science and Technology, Tong Wu, Qihang Yang, Ke Gong, Rong Zhou, Chunlin Cui, Ying Yu, Wei Zhao, Xi Kang, Rui Cao, and Xiaoming Song
Determinations of the peroxidative susceptibilities of cod liver oils by a newly-developed 1H NMR-based method: resistance of an antioxidant-fortified product isolated from pre-fermented sources, B. C. Percival, R. Zbasnik, V. Schlegel, M. Edgar, J. Zhang, and M. Grootveld
Evaluations of the Peroxidative Susceptibilities of Cod Liver Oils by a 1H NMR Analysis Strategy: Peroxidative Resistivity of a Natural Collagenous and Biogenic Amine-Rich Fermented Product, Benita C. Percival, Angela Wann, Richard Zbasnik, Vicki Schlegel, Mark Edgar, Jie Zhang, Gilbert Ampem, Philippe Wilson, Adam Le Gresley, Declan Naughton, and Martin Gootveld
Mucosa-Associated Microbiota in Barrett’s Esophagus, Dysplasia, and Esophageal Adenocarcinoma Differ Similarly Compared with Healthy Controls, Shajan Peter; Amanda Pendergraft,; William VanDerPol; Mel Wilcox; Kondal R. Kyanam Kabir Baig; Casey Morrow; Jacques Izard; and Peter J. Mannon
Effect of pH and Heat Treatment on the Antioxidant Activity of Egg White Protein-Derived Peptides after Simulated In-Vitro Gastrointestinal Digestion, Priyanka Singh Rao, Emerson Nolasco, Akihiro Handa, Michael J. Naldrett, Sophie Alvarez, and Kaustav Majumder
A mouse model of human TLR4 D299G/T399I SNPs reveals mechanisms of altered LPS and pathogen responses, Katharina Richard, Kurt H. Piepenbrink, Kari Ann Shirey, Archana Gopalakrishnan, Shreeram Nallar, Daniel J. Prantner, Darren J. Perkins, Wendy Lai, Alexandra Vik, Vladimir Y. Toshchakov, Chiguang Feng, Rachel Fanaroff, Andrei E. Medvedev, Jorge C.G. Blanco, and Stefanie N. Vogel
Effect of scanning samples through polypropylene film on predicting nitrogen content of forage using handheld NIR, Isaac R. Rukundo, Mary-Grace C. Danao, Robert B. Mitchell, Steven D. Masterson, Randy Wehling, and Curtis L. Weller
Stearidonic-Enriched Soybean Oil Modulates Obesity, Glucose Metabolism, and Fatty Acid Profiles Independently of Akkermansia muciniphila, Rafael R. Segura Munoz, Truyen Quach, João C. Gomes-Neto, Yibo Xian, Pamela A. Pena, Steven Weier, Michael A. Pellizzon, Hatem Kittana, Liz A. Cody, Abby L. Geis, Kari Heck, Robert J. Schmaltz, Laure B. Bindels, Edgar B. Cahoon, Andrew K. Benson, Tom Elmo Clemente, and Amanda E. Ramer-Tait
Wild primate microbiomes prevent weight gain in germ-free mice, Dimitrios N. Sidiropoulos, Gabriel A. Al-Ghalith, Robin R. Shields-Cutler, Tonya L. Ward, Abigail J. Johnson, Pajau Vangay, Dan Knights, Purna C. Kashyap, Yibo Xian, Amanda E. Ramer-Tait, and Jonathan B. Clayton
Chronological set of E. coli O157:H7 bovine strains establishes a role for repeat sequences and mobile genetic elements in genome diversification, Eliot Stanton, Taylor A. Wahlig, Dongjin Park, and Charles W. Kaspar
The gut bacterium Extibacter muris produces secondary bile acids and influences liver physiology in gnotobiotic mice, Theresa Streidl, Isabel Karkossa, Rafael R. Segura Munoz, Claudia Eberl, Alex Zaufel, Johannes Plagge, Robert Schmaltz, Kristin Schubert, Marijana Basic, Kai Markus Schneider, Mamdouh Afify, Christian Trautwein, Rene Tolba, Barbel Stecher, Heidi L. Doden, Jason M. Ridlon, Josef Ecker, Tarek Moustafa, Martin von Bergen, Amanda Ramer-Tait, and Thomas Clavel
The International Scientific Association for Probiotics and Prebiotics (ISAPP) consensus statement on the definition and scope of synbiotics, Kelly S. Swanson, Glenn R. Gibson, Robert W. Hutkins, Raylene A. Reimer, Gregor Reid, Kristin Verbeke, Karen P. Scott, Hannah D. Holscher, Meghan B. Azad, Nathalie M. Delzenne, and Mary Ellen Sanders
Genetic and Functional Analyses of Virulence Potential of an Escherichia coli O157:H7 Strain Isolated From Super-Shedder Cattle, Lin Teng, Shinyoung Lee, Dongjin Park, and Kwangcheol Casey Jeong
Polyphenolic fractions isolated from red raspberry whole fruit, pulp, and seed differentially alter the gut microbiota of mice with diet-induced obesity, Yibo Xian, Rong Fan, Jing Shao, Ashley Mulcahy Toney, Soonkyu Chung, and Amanda E. Ramer-Tait
AcrFinder: genome mining anti-CRISPR operons in prokaryotes and their viruses, Haidong Yi, Le Huang, Bowen Yang, Javi Gomez, Han Zhang, and Yanbin Yin
Sex Bias in Gut Microbiome Transmission in Newly Paired Marmosets (Callithrix jacchus), Lifeng Zhu, Jonathan B. Clayton, Mallory J. Suhr Van Haute, Qinnan Yang, Haley R. Hassenstab, Aaryn C. Mustoe, Dan Knights, Andrew K. Benson, and Jeffrey A. French
Fecal Short-Chain Fatty Acid Concentrations Increase in Newly Paired Male Marmosets (Callithrix jacchus), Lifeng Zhu, Mallory J. Suhr Van Haute, Haley R. Hassenstab, Caroline Smith, Devin J. Rose, Aaryn C. Must, Andrew K. Benson, and Jeffrey A. French
2019
Unorthodox synthesis, biological activity and DFT studies of novel and multifunctionalized naphthoxocine derivatives, Mohamed Ahmed Abozeid, Aya Atef El-Sawi, Mohamed Ramadan Elmorsy, Mohamed Abdelmoteleb, Abdel-Rahman Hassan Abdel- Rahman, and El-Sayed Ibrahim El-Desoky
Histone acetylation increases in response to ferulic, gallic, and sinapic acids acting synergistically in vitro to inhibit Candida albicans yeast‐to‐hyphae transition, Cristiane R. S. Câmara, Qin-Yin Shi, Matthew Pedersen, Richard Zbasnik, Kenneth Nickerson, and Vicki Schlegel
Long-term Use of Antibiotics and Risk of Colorectal Adenoma, Yin Cao, Kana Wu, Raaj Mehta, David A. Drew, Mingyang Song, Paul Lochhead, Long H. Nguyen, Jacques Izard, Charles S. Fuchs, Wendy S. Garrett, Curtis Huttenhower, Shuji Ogino, Edward L. Giovannucci, and Andrew T. Chan
Keeping Allergen Names Clear and Defined, Sanny K. Chan, Anna Pomés, Christiane Hilger, Janet M. Davies, Geoffrey Mueller, Annette Kuehn, Andreas L. Lopata, Gabriele Gadermaier, Marianne van Hage, Monika Raulf, and Richard E. Goodman
The Microbiomes of Pancreatic and Duodenum Tissue Overlap and are Highly Subject Specific but Differ between Pancreatic Cancer and Non-Cancer Subjects, Erika del Castillo, Richard Meier, Mei Chung, Devin C. Koestler, Tsute Chen, Bruce J. Paster, Kevin P. Charpentier, Karl T. Kelsey, Jacques Izard, and Dominique S. Michaud
Genomic Variations Underlying Speciation and Niche Specialization of Shewanella baltica, Jie Deng, Jennifer M. Auchtung, Konstantinos T. Konstantinidis, Ingrid Brettar, Manfred G. Höfle, and James M. Tiedje
Orphan Genes Shared by Pathogenic Genomes Are More Associated with Bacterial Pathogenicity, Sarah Entwistle and Yanbin Yin
Mycoprotein: The Future of Nutritious Nonmeat Protein, a Symposium Review, Tim JA Finnigan, Benjamin T. Wall, Peter J. Wilde, Francis B. Stephens, Steve Taylor, and Marjorie R. Freedman
Cell Wall Enzymes in Zygnema circumcarinatum UTEX 1559 Respond to Osmotic Stress in a Plant-Like Fashion, Elisabeth Fitzek, Lauren Orton, Sarah Entwistle, W. Scott Grayburn, Catherine Ausland, Melvin R. Duvall, and Yanbin Yin
Formation of Low-Density and Free-Flowing Hollow Microparticles from Butter and Fractionated Palm Oil Mixture, Joshua Gudeman, Junsi Yang, and Ozan Ciftci
TLR10 Senses HIV-1 Proteins and Significantly Enhances HIV-1 Infection, Bethany M. Henrick, Xiao-Dan Yao, Muhammad Atif Zahoor, Alash’le Abimiku, Sophia Osawe, and Kenneth L. Rosenthal
Nitrogen, Cobalt Co-doped Fluorescent Magnetic Carbon Dots as Ratiometric Fluorescent Probes for Cholesterol and Uric Acid in Human Blood Serum, Shan Huang, Erli Yang, Jiandong Yao, Xu Chu, Yi Liu, Yue Zhang, and Qi Xiao
Role of Dietary Flavonoid Compounds in Driving Patterns of Microbial Community Assembly, Kerry L. Ivey, Andrew T. Chan, Jacques Izard, Aedin Cassidy, Geraint B. Rogers, and Eric B. Rimm
N-glycans from human milk glycoproteins are selectively released by an infant gut symbiont in vivo, Sercan Karav, Giorgio Casaburi, Aysenur Arslan, Merve Kaplan, Berfin Sucu, and Steven Frese
Gene Expression Value Prediction Based on XGBoost Algorithm, Wei Li, Yanbin Yin, Xiongwen Quan, and Han Zhang
Gut microbiota dependent anti-tumor immunity restricts melanoma growth in Rnf5−/− mice, Yan Li, Roberto Tinoco, Lisa Elmén, Igor Segota, Yibo Xian, Yu Fujita, Avinash Sahu, Raphy Zarecki, Kerrie Marie, Yongmei Feng, Ali Khateb, Dennie T. Frederick, Shiri K. Ashkenazi, Hyungsoo Kim, Eva Guijarro Perez, Chi-Ping Day, Rafael S. Segura Muñoz, Robert Schmaltz, Shibu Yooseph, Miguel A. Tam, Tongwu Zhang, Emily Avitan-Hersh, Lihi Tzur, Shoshana Roizman, Ilanit Boyango, Gil Bar-Sela, Amir Orian, Randal J. Kaufman, Marcus Bosenberg, Colin R. Goding, Bas Baaten, Mitchell P. Levesque, Reinhard Dummer, Kevin Brown, Glenn Merlino, Eytan Ruppin, Keith Flaherty, Amanda Ramer-Tait, Tao Long, Scott N. Peterson, Linda M. Bradley, and Ze’ev A. Ronai
Prophylactic effects of isomaltodextrin in a Balb/c mouse model of egg allergy, Yoshinori Mine, Yan Jin, Hua Zhang, Prithy Rupa, Kaustav Majumder, Takeo Sakurai, Yoshifumi Taniguchi, Ryodai Takagaki, Hikaru Watanabe, and Hitoshi Mitsuzumi
Experimental Evidence for Adaptation to Species-Specific Gut Microbiota in House Mice, Andrew H. Moeller, João C. Gomes-Neto, Sara Mantz, Hatem Kittana, Rafael R. Segura Munoz, Robert J. Schmaltz, Amanda E. Ramer-Tait, and Michael W. Nachman
Postharvest heat treatments to inhibit Penicillium digitatum growth and maintain quality of Mandarin (Citrus reticulata blanco), Diana B. Queb-Gonzalez, Aurelio Lopez-Malo, María E. Sosa-Morales, and Rossana Villa-Rojas
Physicochemical properties and rheological behavior of flours and starches from four bean varieties for gluten-free pasta formulation, Hollman Motta Romero and Yue Zhang
The structure of PilA from Acinetobacter baumannii AB5075 suggests a mechanism for functional specialization in Acinetobacter type IV pili, Leslie A. Ronish, Erik Lillehoj, James K. Fields, Eric J. Sundberg, and Kurt Piepenbrink
Corrigendum: Use of UV Treated Milk Powder to Increase Vaccine Efficacy in the Elderly, Sara Schaefer, Kasper Arthur Hettinga, James Cullor, J. Bruce German, and Bethany M. Henrick
Hydrodistillation Extraction Kinetics Regression Models for Essential Oil Yield and Composition in Juniperus virginiana, J. excelsa, and J. sabina, Ivanka B. Semerdjieva, Santosh Shiwakoti, Charles L. Cantrell, Valtcho D. Zheljazkov, Tess Astatkie, Vicki L. Schlegel, and Tzenka Radoukova
Antimicrobial peptide identification using multi-scale convolutional network, Xin Su, Jing Xu, Yanbin Yin, Xiongwen Quan, and Han Zhang
A novel and green nanoparticle formation approach to forming low-crystallinity curcumin nanoparticles to improve curcumin’s bioaccessibility, Ali Ubeyitogullari and Ozan Ciftci
In vitro bioaccessibility of novel low-crystallinity phytosterol nanoparticles in non-fat and regular-fat foods, Ali Ubeyitogullari and Ozan Ciftci
In Vitro Bioaccessibility of Low-Crystallinity Phytosterol Nanoparticles Generated Using Nanoporous Starch Bioaerogels, Ali Ubeyitogullari, Regis Moreau, Devin J. Rose, and Ozan Ciftci
Candida albicans quorum-sensing molecule farnesol modulates staphyloxanthin production and activates the thiol-based oxidative-stress response in Staphylococcus aureus, Taissa Vila, Eric F. Kong, Ahmed Ibrahim, Kurt Piepenbrink, Amol C. Shetty, Carrie McCracken, Vincent Bruno, and Mary Ann Jabra-Rizk
Extraction of astaxanthin from engineered Camelina sativa seed using ethanol-modified supercritical carbon dioxide, Liyang Xie, Edgar B. Cahoon, Yue Zhang, and Ozan Ciftci
Bioinformatics Identification of Anti-CRISPR Loci by Using Homology, Guilt-by-Association, and CRISPR Self-Targeting Spacer Approaches, Yanbin Yin, Bowen Yang, and Sarah Entwistle
2018
Algal Bloom Expansion Increases Cyanotoxin Risk in Food, Niam M. Abeysiriwardena, Samuel J. L. Gascoigne, and Angela Anandappa
Metatranscriptome of Human Faecal Microbial Communities in a Cohort of Adult Men, Galeb S. Abu-Ali, Raaj S. Mehta, Jason Lloyd-Price, Himel Mallick, Tobyn Branck, Kerry L. Ivey, David A. Drew, Casey DuLong, Eric Rimm, Jacques Izard, Andrew T. Chan, and Curtis Huttenhower
Investigating Colonization of the Healthy Adult Gastrointestinal Tract by Fungi, Thomas A. Auchtung, Tatiana Y. Fofanova, Christopher J. Stewart, Andrea K. Nash, Matthew C. Wong, Jonathan R. Gesell, Jennifer M. Auchtung, Nadim J. Ajami, and Joseph F. Petrosino
Development of omega-3-rich Camelina sativa seed oil emulsions, Henok D. Belayneh, Randy L. Wehling, Yue Zhang, and Ozan N. Ciftci
Colonization of breastfed infants by Bifidobacterium longum subsp. infantis EVC001 reduces virulence gene abundance, Giorgio Casaburi and Steven A. Frese
Food-Derived Bioactive Peptides in Human Health: Challenges and Opportunities, Subhadeep Chakrabarti, Snigdha Guha, and Kaustav Majumder
Food processing environment surveillance using amplicon metagenomics: Assessing the change in the microbiome of a fluid milk processing facility before and after cleaning, Sapna Chitlapilly Dass, Bing Wang, Jayne E. Stratton, Andreia Bianchini, and Angela Ababdappa
Purification and Characterization of Naturally Occurring Post-Translationally Cleaved Ara h 6, an Allergen That Contributes Substantially to the Allergenic Potency of Peanut, Govardus A. H. de Jong, Shyamali Jayasena, Philip Johnson, Justin Marsh, Danijela Apostolovic, Marianne van Hage, Julie A. Nordlee, Joe Baumert, Steve L. Taylor, Camille Roucairol, Harmen de Jongh, and Stef J. Koppelman
Divergence in Gene Regulation Contributes to Sympatric Speciation of Shewanella baltica Strains, Jie Deng, Jennifer M. Auchtung, Konstantinos T. Konstantinidis, Alejandro Caro-Quintero, Ingrid Brettar, Manfred Hofle, and James M. Tiedje
Microstructural changes to proso millet protein bodies upon cooking and digestion, Paridhi Gulati, You Zhou, Christian Elowsky, and Devin J. Rose
Elevated Fecal pH Indicates a Profound Change in the Breastfed Infant Gut Microbiome Due to Reduction of Bifidobacterium over the Past Century, Bethany M. Henrick, Andra A. Hutton, Michelle C. Palumbo, Giorgio Casaburi, Ryan D. Mitchell, Mark A. Underwood, Jennifer T. Smilowitz, and Steven A. Frese
Reduced colonic mucin degradation in breastfed infants colonized by Bifidobacterium longum subsp. infantis EVC001, Sercan Karav, Giorgio Casaburi, and Steven A. Frese
Commensal Escherichia coli Strains Can Promote Intestinal Inflammation via Differential Interleukin-6 Production, Hatem Kittana, Joao Carlos Gomes-Neto, Kari Heck, Abby L. Geis, Rafael R. Segura Munoz, Liz A. Cody, Robert J. Schmaltz, Laure B. Bindels, Rohita Sinha, Jesse M. Hostetter, Andrew K. Benson, and Amanda E. Ramer-Tait
Role of whole grains versus fruits and vegetables in reducing subclinical inflammation and promoting gastrointestinal health in individuals affected by overweight and obesity: a randomized controlled trial, Julianne C. Kopf, Mallory J. Suhr, Jennifer L. Clarke, Seong-il Eyun, Jean-Jack M. Riethoven, Amanda E. Ramer-Tait, and Devin J. Rose
Release of Major Peanut Allergens from Their Matrix under Various pH and Simulated Saliva Conditions—Ara h2 and Ara h6 Are Readily Bio-Accessible, Stef J. Koppelman, Mieke Smits, Monic Tomassen, Govardus A.H. de Jong, Joseph L. Baumert, Steve L. Taylor, Renger Witkamp, Robert Jan Veldman, Raymond Pieters, and Harry J. Wichers
Probiotic Bifidobacterium strains and galactooligosaccharides improve intestinal barrier function in obese adults but show no synergism when used together as synbiotics, Janina A. Krumbeck, Heather E. Rasmussen, Robert W. Hutkins, Jennifer L. Clarke, Krista Shawron, Ali Keshavarzian, and Jens Walter
Characterization of Food Structures and Functionalities, Xingxun Liu, Ying Yang, Changmou Xu, and Jiajia Rao
The MSDIN family in amanitin-producing mushrooms and evolution of the prolyl oligopeptidase genes, Hong Luo, Qing Cai, Yungjiao Luli, Xuan Li, Rohita Sinha, Heather E. Hallen-Adams, and Zhu L. Yang
Experimental evaluation of the importance of colonization history in early-life gut microbiota assembly, Inés Martínez, Maria X. Maldonado-Gomez, João Carlos Gomes-Neto, Hatem Kittana, Hua Ding, Robert J. Schmaltz, Payal Joglekar, Roberto Jiménez Cardona, Nathan L Marsteller, Steven W. Kembel, Andrew K. Benson, Daniel A. Peterson, Amanda Ramer-Tait, and Jens C. Walter
Stability of the Human Faecal Microbiome in a Cohort of Adult Men, Raaj S. Mehta, David A. Drew, Jason Lloyd-Price, Ayshwarya Subramaian, Paul Lochhead, Amit D. Joshi, Kerry L. Ivey, Hamed Khalili, Gordon T. Brown, Casey DuLong, Mingyang Song, Long H. Nguyen, Himel Mallick, Eric B. Rimm, Jacques Izard, Curtis Huttenhower, Andrew T. Chan, and Galeb S. Abu-Ali
Dietary Patterns and Risk of Colorectal Cancer Subtypes Classified by Fusobacterium nucleatum in Tumor Tissue, Raaj S. Mehta, Reiko Nishihara, Yin Cao, Mingyang Song, Kosuke Mima, Zhi Rong Qian, Jonathan A. Nowak, Keisuke Kosumi, Tsuyoshi Hamada, Yohei Masugi, Susan Bullman, David A. Drew, Aleksandar D. Kostic, Teresa T. Fung, Wendy S. Garrett, Curtis Huttenhower, Kana Wu, Jeffrey A. Meyerhardt, Xuehong Zhang, Walter C. Willett, Edward L. Giovannucci, Charles S. Fuchs, Andrew T. Chan, and Shuji Ogino
Clinical and Genomic Characterization of Recurrent Enterococcal Bloodstream Infection in Patients With Acute Leukemia, Julia A. Messina, Rohita Sinha, Kimberly Starr, Mehreen Arshad, Barbara D. Alexander, Nelson J. Chao, and Anthony D. Sung
The human brainome: network analysis identifies HSPA2 as a novel Alzheimer’s disease target, Vladislav A. Petyuk, Rui Chang, Manuel Ramirez-Restrepo, Noam D. Beckmann, Marc Y. R. Henrion, Paul D. Piehowski, Kuixi Zhu, Sven Wang, Jennifer L. Clarke, Matthew J. Huentelman, Fang Xie, Victor Andreev, Anzhelika Engel, Toumy Guettoche, Loida Navarro, Philip De Jager, Julie A. Schneider, Christopher M. Morris, Ian G. McKeith, Robert H. Perry, Simon Lovestone, Randall L. Woltjer, Thomas G. Beach, Lucia I. Sue, Geidy E. Serrano, Andrew P. Lieberman, Roger L. Albin, Isidre Ferrer, Deborah C. Mash, Christine M. Hulette, John F. Ervin, Eric M. Reiman, John A. Hardy, David A. Bennett, Eric Schadt, Richard D. Smith, and Amanda J. Myers
WHO/IUIS Allergen Nomenclature: Providing a common language, Anna Pomes, Janet M. Davies, Gabriele Gadermaier, Christiane Hilger, Thomas Holzhauser, Jonas Lidholm, Andreas L. Lopata, Geoffrey A. Mueller, Andreas Nandy, Christian Radauer, Sanny K. Chan, Uta Jappe, Jorg Kleine-Tebbe, Wayne R. Thomas, Martin D. Chapman, Marianne van Hage, Ronald van Ree, Stefan Vieths, Monika Raulf, and Richard E. Goodman
Changes in enzymatic activities and functionality of whole wheat flour due to steaming of wheat kernels, Rachana Poudel and Devin J. Rose