Agronomy and Horticulture, Department of
Department of Agronomy and Horticulture: Faculty Publications
2014
Identification and validation of quantitative trait loci for seed yield, oil and protein contents in two recombinant inbred line populations of soybean, Xianzhi Wang, Guo‑Liang Jiang, Marci Green, Roy A. Scott, Qijian Song, D. L. Hyten, and P. B. Cregan
Transcriptomic and physiological characterization of the fefe mutant of melon (Cucumis melo) reveals new aspects of iron-copper crosstalk, Brian M. Waters, Samuel A. McInturf, and Keenan Amundsen
Quantitative proteomic analysis of the Salmonella-lettuce interaction, Yuping Zhang, Renu Nandakumar, Shannon L. Bartelt-Hunt, Daniel D. Snow, Laurie Hodges, and Xu Li
Phytophthora Root Rot Resistance in Soybean E00003, Zhongnan Zhang, Jianjun Hao, Jiazheng Yuan, Qijian Song, D. L. Hyten, P. B. Cregan, Guorong Zhang, Cuihua Gu, Ming Li, and Dechun Wang
2013
DNA fingerprinting and anastomosis grouping reveal similar genetic diversity in Rhizoctonia species infecting turfgrasses in the transition zone of USA, B. S. Amaradasa, B. J. Horvath, D. K. Lakshman, and S. E. Warnke
Mapping soybean aphid resistance genes in PI 567598B, Carmille Bales, Guorong Zhang, Menghan Liu, Clarice Mensah, Cuihua Gu, Qijian Song, D. L. Hyten, P. B. Cregan, and Dechun Wang
Soybean Seed Amino Acid Content QTL Detected Using the Universal Soy Linkage Panel 1.0 with 1,536 SNPs, Benjamin D. Fallen, Catherine N. Hatcher, Fred L. Allen, Dean A. Kopsell, Arnold M. Saxton, Pengyin Chen, Stella K. Kantartzi, P. B. Cregan, D. L. Hyten, and Vincent R. Pantalone
New technologies reduce greenhouse gas emissions from nitrogenous fertilizer in China, Wei-feng Feng, Zheng-xia Dou, Pan He, Xiao-Tang Ju, David Powlson, Dave Chadwick, David Norse, Yue-Lai Lu, Ying Zhang, Liang Wu, Xin-Ping Chen, Kenneth Cassman, and Fu-Suo Zhang
The Essentials of Economic Sustainability by John Ikerd [Book Review], Charles A. Francis
Food Webs and Food Sovereignty: Research Agenda for Sustainability, Charles A. Francis, Michelle Miller, Molly Anderson, Nancy Creamer, Michelle Wander, Jacob Park, Thomas Green, and Brent McCown
Characterization of fluorescent Pseudomonas spp. associated with roots and soil of two sorghum genotypes, Deanna L. Funnell-Harris, Scott E. Sattler, and Jeffrey F. Pedersen
Distinguishing between yield advances and yield plateaus in historical crop production trends, Patricio Grassini, Kent M. Eskridge, and Kenneth Cassman
Complete plastid genomes from Ophioglossum californicum, Psilotum nudum, and Equisetum hyemale reveal an ancestral land plant genome structure and resolve the position of Equisetales among monilophytes, Felix Grewe, Wenhu Guo, Emily A. Gubbels, A Katie Hansen, and Jeffrey P. Mower
Nutrient partitioning and grain yield of TaNAM-RNAi wheat under abiotic stress, Mary J. Guttieri, Ricardo J. Stein, and Brian M. Waters
Identification and Characterization of Transcription Factors Regulating Arabidopsis HAK5, Jong-Pil Hong, Yoshizumi Takeshi, Youichi Kondou, Daniel P. Schachtman, Minami Matsui, and Ryoung Shin
The Clubroot Pathogen (Plasmodiophora brassicae) Influences Auxin Signaling to Regulate Auxin Homeostasis in Arabidopsis, Linda Jahn, Stefanie Mucha, Sabine Bergmann, Cornelia Horn, Paul E. Staswick, Bianka Steffens, Johannes Siemens, and Jutta Ludwig-Müller
Sorghum Transformation: Overview and Utility, Tejinder Kumar, Arlene Howe, Shirley Sato, Ismail M. Dweikat, and Tom E. Clemente
The reduced mycorrhizal colonization (rmc) mutation of tomato disrupts five gene sequences including the CYCLOPS/IPD3 homologue, Nicholas J. Larkan, Dan R. Ruzicka, Tamara Edmonds-Tibbett, Jonathan M. H. Durkin, Louise E. Jackson, F. Andrew Smith, Daniel P. Schachtman, Sally E. Smith, and Susan J. Barker
The Amino Acid Permeases AAP3 and AAP6 Are Involved in Root-Knot Nematode Parasitism of Arabidopsis, Heather H. Marella, Erik Nielsen, Daniel P. Schachtman, and Christopher G. Taylor
Critical Research Needs for Successful Food Systems Adaptation to Climate Change, Michelle Miller, Molly Anderson, Charles A. Francis, Chad Kruger, Carol Barford, Jacob Park, and Brent H. McCown
Enzyme activity in wheat breeding lines derived from matings of low polyphenol oxidase parents, Somrudee Nilthong, Robert A. Graybosch, and P. Stephen Baenziger
The Challenges of Growing Strawberries in the Greenhouse, Ellen T. Paparozzi
Genetic Mapping and Confirmation of Quantitative Trait Loci for Seed Protein and Oil Contents and Seed Weight in Soybean, Safiullah M. Pathan, Tri Vuong, Kerry Clark, Jeong-Dong Lee, J. Grover Shannon, Craig A. Roberts, Mark R. Ellersieck, Joseph W. Burton, P. B. Cregan, David L. Hyten, Henry T. Nguyen, and David A. Sleper
Evaluation of Public Sweet Sorghum A-Lines for Use in Hybrid Production, Jeffrey F. Pedersen, Scott E. Sattler, and William F. Anderson
Evaluation of Public Sweet Sorghum A-Lines for Use in Hybrid Production, Jeffrey F. Pedersen, Scott E. Sattler, and William F. Anderson
Unleashing the potential of the root hair cell as a single plant cell type model in root systems biology, Zhenzhen Qiao and Marc Libault
2013 Fall Seed Guide, Teshome Regassa, P. Stephen Baenziger, Greg Kruger, and Dipak Santra
NEBRASKA VARIETY AND HYBRID TESTS: SPRING SEED GUIDE - 2014, Teshome Regassa, Dipak Santra, Charles A. Shapiro, Greg Kruger, and Bruce Anderson
Genetic Dissection of Yield and Its Component Traits Using High-Density Composite Map of Wheat Chromosome 3A: Bridging Gaps between QTLs and Underlying Genes, Sachin Rustgi, Mustafa N. Shafqat, Neeraj Kumar, P. Stephen Baenziger, M. Liakat Ali, Ismail M. Dweikat, B. Todd Campbell, and Kulvinder Singh Gill
Inside Arbuscular Mycorrhizal Roots – Molecular Probes to Understand the Symbiosis, Daniel R. Ruzicka, Srikar Chamala, Felipe H. Barrios-Masias, Francis Martin, Sally Smith, Louise E. Jackson, W. Brad Barbazuk, and Daniel P. Schachtman
Erratum to: Identification and Characterization of Four Missense Mutations in Brown midrib12 (Bmr12), the Caffeic acid O-Methyltranferase (COMT) of Sorghum, Scott E. Sattler, Nathan A. Palmer, Ana Saballos, Ann M. Greene, Zhanguo Xin, Gautam Sarath, Wilfred Vermerris, and Jeffrey F. Pedersen
Agricultural innovation to protect the environment, Jeffrey Sayer and Kenneth Cassman
Remote estimation of nitrogen and chlorophyll contents in maize at leaf and canopy levels, Michael Schlemmer, Anatoly A. Gitelson, James S. Schepers, Richard B. Ferguson, Y. Peng, J. Shanahan, and Donald Rundquist
Rate of Shattercane × Sorghum Hybridization In Situ, Jared J. Schmidt, Jeffrey F. Pedersen, Mark L. Bernards, and John L. Lindquist
SUB1A-mediated submergence tolerance response in rice involves differential regulation of the brassinosteroid pathway, Aaron J. Schmitz, Jing J. Folsom, Yusuke Jikamaru, Pamela C. Ronald, and Harkamal Walia
Soil sorptivity enhancement with crop residue accumulation in semiarid dryland no-till agroecosystems, T.M. Shaver, G. A. Peterson, Laj R. Ahuja, and D.G. Westfall
Development and Evaluation of SoySNP50K, a High-Density Genotyping Array for Soybean, Qijian Song, D. L. Hyten, Gaofeng Jia, Charles V. Quigley, Edward W. Fickus, Randall L. Nelson, and P. B. Cregan
The Plant Science Decadal Vision: Response to the Martin Commentary, David Stern and Sally Ann MacKenzie
Indoor Application of Attractive Toxic Sugar Bait (ATSB) in Combination with Mosquito Nets for Control of Pyrethroid-Resistant Mosquitoes, Zachary P. Stewart, Richard M. Oxborough, Patrick K. Tungu, Matthew J. Kirby, Mark W. Rowland, and Seth R. Irish
Immunodetection of Triticum mosaic virus by DAS- and DAC-ELISA using antibodies produced against coat protein expressed in Escherichia coli: Potential for high-throughput diagnostic methods, Satyanarayana Tatineni, Gautam Sarath, Dallas Seifers, and Roy C. French
Arbuscular mycorrhizal fungi differ in their ability to regulate the expression of phosphate transporters in maize (Zea mays L.), Hui Tian, Rhae A. Drijber, Xiaolin Li, Daniel N. Miller, and Brian J. Wienhold
Functional characterization of cinnamyl alcohol dehydrogenase and caffeic acid O-methyltransferase in Brachypodium distachyon, Gina M. Trabucco, Dominick A. Matos, Scott J. Lee, Aaron J. Saathoff, Henry D. Priest, Todd C. Mockler, Gautam Sarath, and Samuel P. Hazen
Automated Conserved Non-Coding Sequence (CNS) Discovery Reveals Differences in Gene Content and Promoter Evolution among Grasses, Gina Marie Turco, James C. Schnable, Brent S. Pedersen, and Michael Freeling
Refining thresholds in coupled fire–vegetation models to improve management of encroaching woody plants in grasslands, Dirac L. Twidwell Jr, Samuel D. Fuhlendorf, Charles A. Taylor Jr, and William E. Rogers
Yield gap analysis with local to global relevance—A review, Martin K. van Ittersum, Kenneth Cassman, Patricio Grassini, Joost Wolf, Pablo Tittonell, and Zvi Hochman
Yield gap analysis—Rationale, methods and applications—Introduction to the Special Issue, M.K. van Ittersum and Kenneth Cassman
Estimating crop yield potential at regional to national scales, Justin van Wart, Kurt Christian Kersebaum, Shaobing Peng, Maribeth Milner, and Kenneth Cassman
Use of agro-climatic zones to upscale simulated crop yield potential, Justin van Wart, Lenny G.J. van Bussel, Joost Wolf, Rachel Licker, Patricio Grassini, Andrew Nelson, Hendrik Boogaard, James Gerber, Nathaniel D. Mueller, Lieven Claessens, Martin K. van Ittersum, and Kenneth Cassman
Transcriptome analysis of two buffalograss cultivars, Michael Wachholtz, Tiffany Heng-Moss, Paul Twigg, Lisa Baird, Guoqing Lu, and Keenan Amundsen
Optimal copper supply is required for normal plant iron deficiency responses, Brian M. Waters and Laura C. Armbrust
Chloroplast Division Protein ARC3 Regulates Chloroplast FtsZ-Ring Assembly and Positioning in Arabidopsis through Interaction with FtsZ2, Min Zhang, Aaron J. Schmitz, Deena K. Kadirjan-Kalbach, Allan D. TerBush, and Katherine W. Osteryoung
2012
The ‘PI 438489B’ by ‘Hamilton’ SNP-Based Genetic Linkage Map of Soybean [Glycine max (L.) Merr.] Identified Quantitative Trait Loci that Underlie Seedling SDS Resistance, Kassem My Abdelmajid, Laura Ramos, Leonor Leandro, Gladys Mbofung, D. L. Hyten, Stella K. Kantartzi, Robert L. Grier IV, Victor N. Njiti, and Khalid Meksem
Effectiveness of Grass Filters in Reducing Phosphorus and Sediment Runoff, Ahmed Al-wadaey, Charles S. Wortmann, Thomas G. Franti, Charles A. Shapiro, and Dean E. Eisenhauer
Registration of ‘NI04421’ Hard Red Winter Wheat, P. Stephen Baenziger, Robert A. Graybosch, Teshome H. Regassa, Lenis Alton Nelson, Robert N. Klein, Dipak K. Santra, D. D. Baltensperger, J. M. Krall, Lei Xu, Stephen N. Wegulo, Y. Jin, J. Kolmer, Ming-Shun Chen, and Guihua Bai
Registration of ‘NE01481’ Hard Red Winter Wheat, P. Stephen Baenziger, Robert A. Graybosch, Teshome H. Regassa, Lenis Alton Nelson, Robert N. Klein, Dipak K. Santra, D. D. Baltensperger, Lei Xu, Stephen N. Wegulo, Y. Jin, J. Kolmer, Ming-Shun Chen, and Guihua Bai
Expected Economic Potential of Substituting Legumes for Nitrogen in Bermudagrass Pastures, Jon T. Biermacher; The Samuel Roberts Noble Foundation, Inc. Reuter; M.K. Kering; J.K. Rogers; J. Blanton Jr; John A. Guretzky; and T.J. Butler
Agriculture and Food in Crisis: Conflict, Resistance, and Renewal [Book Review], Charles A. Francis
Cultivating a Movement: Excerpts from an Oral History of Organic Farming and Sustainable Agriculture on California’s Central Coast [Book Review], Charles A. Francis
High-yield maize with large net energy yield and small global warming intensity, Patricio Grassini and Kenneth Cassman
An evaluation of MODIS 8- and 16-day composite products for monitoring maize green leaf area index, Noemi Guindin-Garcia, Anatoly A. Gitelson, Timothy J. Arkebauer, John Shanahan, and Albert Weiss
Auxin Controls Arabidopsis Adventitious Root Initiation by Regulating Jasmonic Acid Homeostasis, Laurent Gutierrez, Gaëlle Mongelard, Kristýna Floková, Daniel I. Păcurar, Ondrej Novák, Paul E. Staswick, Mariusz Kowalczyk, Monica Păcurar, Gaia Geiss, and Catherine Bellini
Managing Nitrogen and Phosphorus Nutrients for Switchgrass Produced for Bioenergy Feedstock in Phosphorus-Deficient Soil, Mohua Haque, Jon T. Biermacher, Maru Kering, and John A. Guretzky
Advances in Genome Sequencing and Genotyping Technology for Soybean Diversity Analysis, David L. Hyten
Biomass Yield and Nutrient Responses of Switchgrass to Phosphorus Application, M. K. Kering, J. T. Biermacher, T. J. Butler, J. Mosali, and John A. Guretzky
Biomass Yield and Nutrient Removal Rates of Perennial Grasses under Nitrogen Fertilization, M. K. Kering, T. J. Butler, J. T. Biermacher, and John A. Guretzky
Molecular mapping of soybean rust resistance in soybean accession PI 561356 and SNP haplotype analysis of the Rpp1 region in diverse germplasm, Ki-Seung Kim, Jair R. Unfried, D. L. Hyten, Reid D. Frederick, Glen L. Hartman, Randall L. Nelson, Qijian Song, and Brian W. Diers
Identification of positive yield QTL alleles from exotic soybean germplasm in two backcross populations, K.-S. Kim, B. W. Diers, D. L. Hyten, M. A. Rouf Mian, J. G. Shannon, and R. L. Nelson
Modulation of kernel storage proteins in grain sorghum (Sorghum bicolor (L.) Moench), Tejinder Kumar, Ismail M. Dweikat, Shirley Sato, Zhengxiang Ge, Natalya Nersesian, Han Chen, Thomas Elthon, Scott Bean, Brian P. Ioerger, Mike Tilley, and Thomas E. Clemente
Estimating Construction Costs for a Low-Cost Quonset-style Greenhouse, David P. Lambe, Stacy A. Adams, and Ellen T. Paparozzi
Marketing Contracts, Overconfidence, and Timing in the Canadian Wheat Market, Fabio L. Mattos and Stefanie A. Fryza
Structural Variants in the Soybean Genome Localize to Clusters of Biotic Stress-Response Genes, Leah K. McHale, William J. Haun, Wayne W. Xu, Pudota B. Bhaskar, Justin E. Anderson, D. L. Hyten, Daniel J. Gerhardt, Jeffrey A. Jeddeloh, and Robert M. Stupar
An Investigation of Reflective Mulches for use over Capillary Mat Systems for Winter-time Greenhouse Strawberry Production, George E. Meyer, Ellen T. Paparozzi, Elizabeth Walter-Shea, Erin E. Blankenship, and Stacy A. Adams
Switchgrass Harvest and Storage, Robert B. Mitchell and Marty R. Schmer
Inheritance of grain polyphenol oxidase (PPO) activity in multiple wheat (Triticum aestivum L.) genetic backgrounds, Somrudee Nilthong, Robert A. Graybosch, and P. Stephen Baenziger
Inheritance of grain polyphenol oxidase (PPO) activity in multiple wheat (Triticum aestivum L.) genetic backgrounds, Somrudee Nilthong, Robert A. Graybosch, and P. Stephen Baenziger
The Return Of Capillary Mats, Ellen T. Paparozzi and George E. Meyer
Greenhouse Production of Strawberries During the Winter, Ellen T. Paparozzi, George E. Meyer, Stacy A. Adams, M. Elizabeth Conley, Benjamin A. Loseke, and Paul E. Read
Brown midrib2 (Bmr2) encodes the major 4-coumarate: coenzyme A ligase involved in lignin biosynthesis in sorghum (Sorghum bicolor (L.) Moench), Ana Saballos, Scott Sattler, Emiliano Sanchez, Timothy P. Foster, Zhanguo Xin, ChulHee Kang, Jeffrey F. Pedersen, and Wilfred Vermerris
Crop Management of Switchgrass, Matt A. Sanderson, Marty R. Schmer, Vance Owens, Pat Keyser, and Wolter Elbersen
Identification and Characterization of Four Missense Mutations in Brown midrib 12 (Bmr12), the Caffeic O-Methyltranferase (COMT) of Sorghum, Scott E. Sattler, Nathan A. Palmer, Ana Saballos, Ann M. Greene, Zhanguo Xin, Gautam Sarath, Wilfred Vermerris, and Jeffrey F. Pedersen
Genome-Wide Analysis of Syntenic Gene Deletion in the Grasses, James C. Schnable, Michael Freeling, and Eric Lyons
Escape from Preferential Retention following Repeated Whole Genome Duplications in Plants, James C. Schnable, Xiaowu Wang, J. Chris Pires, and Michael Freeling
2011 Vadose Zone Nitrate Study at Hastings, NE (Revised), Roy F. Spalding and Martin Toavs
Quantitative trait locus analysis of saturated fatty acids in a population of recombinant inbred lines of soybean, Xianzhi Wang, Guo-Liang Jiang, Marci Green, Roy A. Scott, D. L. Hyten, and P. B. Cregan
Rosette Iron Deficiency Transcript and MicroRNA Profiling Reveals Links between Copper and Iron Homeostasis in Arabidopsis thaliana, Brian M. Waters, Samuel A. McInturf, and Ricardo J. Stein
Natural variation in iron use efficiency and mineral remobilization in cucumber (Cucumis sativus), Brian M. Waters and Grace Troupe
Composting Manure and Other Organic Materials, Charles S. Wortmann and Charles A. Shapiro
Local Conditions, Not Regional Gradients, Drive Demographic Variation of Giant Ragweed (Ambrosia trifida) and Common Sunflower (Helianthus annuus) Across Northern U.S. Maize Belt, Samuel E. Wortman, Adam Davis, Brian J. Schutte, John L. Lindquist, John Cardina, Joel Felix, Christy L. Sprague, J. Anita Dille, Analiza H. M. Ramirez, Graig Reicks, and Sharon A. Clay
Optimizing Cover Crop Benefits with Diverse Mixtures and an Alternative Termination Method, Samuel E. Wortman, Charles A. Francis, Mark L. Bernards, Rhae A. Drijber, and John L. Lindquist
Cover Crop Mixtures for the Western Corn Belt: Opportunities for Increased Productivity and Stability, Samuel E. Wortman, Charles A. Francis, and John L. Lindquist
Ecosystem Services: The Significance of Contributions by Invasive Plant Species, Stephen L. Young
True integrated weed management, Stephen L. Young
High-Resolution Mapping of Open Chromatin in the Rice Genome, Wenli Zhang, Yufeng Wu, James C. Schnable, Zixian Zeng, Michael Freeling, Gregory E. Crawford, and Jiming Jiang
2011
Registration of ‘NH03614 CL’ Wheat, P. Stephen Baenziger, Robert A. Graybosch, Lenis Alton Nelson, Teshome H. Regassa, Robert N. Klein, D. D. Baltensperger, Dipak K. Santra, A. M. H. Ibrahim, W. Berzonsky, J. M. Krall, Lei Xu, Stephen N. Wegulo, M. L. Bernards, Y. Jin, J. Kolmer, J. H. Hatchett, M.-S. Chen, and G. Bai
Structuring an Efficient Organic Wheat Breeding Program, P. Stephen Baenziger, Ibrahim Salah, Richard S. Little, Dipak K. Santra, Teshome Regassa, and Meng Yuan Wang
A First Insight into Population Structure and Linkage Disequilibrium in the U.S. Peanut Minicore Collection, Vikas Belamkar, Michael Gomez Selvaraj, Jamie L. Ayers, Paxton R. Payton, Naveen Puppala, and Mark D. Burow
WHAT IS THE POTENTIAL OF SUBSTITUTING LEGUMES FOR SYNTHETIC NITROGEN IN WARM SEASON PERENNIAL GRASSES USED FOR STOCKER CATTLE GRAZING?, J. Biermacher, John A. Guretzky, Ryan Reuter, Maru Kering, Twain Butler, Job Springer, James Rogers, John Blanton, and Joe Bouton
Integrated soil–crop system management for food security, Xin-Ping Chen, Zhen-Ling Cui, Peter M. Vitousek, Kenneth Cassman, Pamela A. Matson, Jin-Shun Bai, Qing-Feng Meng, Peng Hou, Shan-Chao Yue, Volker Römheld, and Fu-Suo Zhang
Heritable Epigenetic Variation among Maize Inbreds, Steve R. Eichten, Ruth A. Swanson, James C. Schnable, Amanda J. Waters, Peter J. Hermanson, Sanzhen Liu, Cheng-Ting Yeh, Yi Jia, Karla Gendler, Michael Freeling, Patrick S. Schnable, Matthew W. Vaughn, and Nathan M. Springer