Agronomy and Horticulture, Department of
Department of Agronomy and Horticulture: Faculty Publications
2012
Ecosystem Services: The Significance of Contributions by Invasive Plant Species, Stephen L. Young
True integrated weed management, Stephen L. Young
High-Resolution Mapping of Open Chromatin in the Rice Genome, Wenli Zhang, Yufeng Wu, James C. Schnable, Zixian Zeng, Michael Freeling, Gregory E. Crawford, and Jiming Jiang
2011
Registration of ‘NH03614 CL’ Wheat, P. Stephen Baenziger, Robert A. Graybosch, Lenis Alton Nelson, Teshome H. Regassa, Robert N. Klein, D. D. Baltensperger, Dipak K. Santra, A. M. H. Ibrahim, W. Berzonsky, J. M. Krall, Lei Xu, Stephen N. Wegulo, M. L. Bernards, Y. Jin, J. Kolmer, J. H. Hatchett, M.-S. Chen, and G. Bai
Structuring an Efficient Organic Wheat Breeding Program, P. Stephen Baenziger, Ibrahim Salah, Richard S. Little, Dipak K. Santra, Teshome Regassa, and Meng Yuan Wang
A First Insight into Population Structure and Linkage Disequilibrium in the U.S. Peanut Minicore Collection, Vikas Belamkar, Michael Gomez Selvaraj, Jamie L. Ayers, Paxton R. Payton, Naveen Puppala, and Mark D. Burow
WHAT IS THE POTENTIAL OF SUBSTITUTING LEGUMES FOR SYNTHETIC NITROGEN IN WARM SEASON PERENNIAL GRASSES USED FOR STOCKER CATTLE GRAZING?, J. Biermacher, John A. Guretzky, Ryan Reuter, Maru Kering, Twain Butler, Job Springer, James Rogers, John Blanton, and Joe Bouton
Integrated soil–crop system management for food security, Xin-Ping Chen, Zhen-Ling Cui, Peter M. Vitousek, Kenneth Cassman, Pamela A. Matson, Jin-Shun Bai, Qing-Feng Meng, Peng Hou, Shan-Chao Yue, Volker Römheld, and Fu-Suo Zhang
Heritable Epigenetic Variation among Maize Inbreds, Steve R. Eichten, Ruth A. Swanson, James C. Schnable, Amanda J. Waters, Peter J. Hermanson, Sanzhen Liu, Cheng-Ting Yeh, Yi Jia, Karla Gendler, Michael Freeling, Patrick S. Schnable, Matthew W. Vaughn, and Nathan M. Springer
High-yield irrigated maize in the Western U.S. Corn Belt: I. On-farm yield, yield potential, and impact of agronomic practices, Patricio Grassini, John Thorburn, Charles Burr, and Kenneth Cassman
High-yield irrigated maize in the Western U.S. Corn Belt: II. Irrigation management and crop water productivity, Patricio Grassini, Haishun Yang, Suat Irmak, John Thorburn, Charles Burr, and Kenneth G. Cassman
Registration of ‘Anton’ Hard White Winter Wheat, Robert A. Graybosch, C. James Peterson, P. Stephen Baenziger, David D. Baltensperger, Lenis Alton Nelson, Yue Jin, James A. Kolmer, Bradford W. Seabourn, and Brian S. Beecher
Switchgrass for forage and bioenergy: Harvest and nitrogen rate effects on biomass yields and nutrient composition, John A. Guretzky, Jon T. Biermacher, Billy Cook, Maru K. Kering, and Jagadeesh Mosali
The Composition and Origins of Genomic Variation among Individuals of the Soybean Reference Cultivar Williams 82, William J. Haun, D. L. Hyten, Wayne W. Xu, Daniel J. Gerhardt, Thomas J. Albert, Todd Richmond, Jeffrey A. Jeddeloh, Gaofeng Jia, Nathan M. Springer, Carroll P. Vance, and Robert M. Stupar
Identification of a Second Asian Soybean Rust Resistance Gene in Hyuuga Soybean, Mandy D. Kendrick, Donna K. Harris, Bo-Keun Ha, D. L. Hyten, P. B. Cregan, Reid D. Frederick, H. Roger Boerma, and Kerry F. Pedley
Effect of Nitrogen Fertilizer Rate and Harvest Season on Forage Yield, Quality, and Macronutrient Concentrations in Midland Bermuda grass, Maru K. Kering, John A. Guretzky, Eddie Funderburg, and Jagadeesh Mosali
Stacking Resistance Alleles from Wild and Domestic Soybean Sources Improves Soybean Cyst Nematode Resistance, Myungsik Kim, D. L. Hyten, Terry L. Niblack, and Brian W. Diers
Adding Value to Graduate Education: The Comprehensive Examination, John L. Lindquist, Samuel E. Wortman, and Charles A. Francis
Genome-Wide Association Analysis Identifies Candidate Genes Associated with Iron Deficiency Chlorosis in Soybean, Sujan Mamidi, Shireen Chikara, R. Jay Goos, D. L. Hyten, Deepti Annam, Samira Mafi Moghaddam, Rian K. Lee, P. B. Cregan, and Phillip E. McClean
Learning Gains and Response to Digital Lessons on Soil Genesis and Development, Martha Mamo, James A. Ippolito, Timothy A. Kettler, Ronald Reuter, Dennis L. McCallister, Patricia Morner, Dann E. Husmann, and Erin E. Blankenship
Miscanthus 3 giganteus productivity: the effects of management in different environments, Matt Maughan, German Bollero, D.K. Lee, Robert Darmody, Stacy Bonos, Laura Cortese, James Murphy, Roch E. Gaussoin, Matthew Sousek, David Williams, Linda Williams, Fernando Miguez, and Thomas Voigt
Registration of Seven Winter Wheat Germplasm Lines Carrying the Wsm1 Gene for Wheat Streak Mosaic Virus Resistance, Jasdeep S. Mutti, P. Stephen Baenziger, Robert A. Graybosch, Roy French, and Kulvinder S. Gill
Biological Suppression of Velvetleaf (Abutilon theophrasti ) in an Eastern Nebraska Soil, Jane Okalebo, Gary Y. Yuen, Rhae A. Drijber, Erin E. Blankenship, Cafer Eken, and John L. Lindquist
Cytokinin-mediated source ⁄sink modifications improve drought tolerance and increase grain yield in rice under water-stress, Zvi Peleg, Maria Reguera, Ellen Tumimbang, Harkamal Walia, and Eduardo Blumwald
Mutational analysis of the major soybean UreF paralogue involved in urease activation, Joe C. Polacco, D. L. Hyten, Mônica Medeiros-Silva, David A. Sleper, and Kristin D. Bilyeu
Volume, texture, and molecular mechanism behind the collapse of bread made with different levels of hard waxy wheat flours, Shivananda K. Garimella Purna, Rebecca A. Miller, Paul A. Seib, Robert A. Graybosch, and Yong-Cheng Shi
Estimation of surface soil organic matter using a ground-based active sensor and aerial imagery, D. F. Roberts, V. I. Adamchuk, J. F. Shanahan, R. B. Ferguson, and J. S. Schepers
Switchgrass Contains Two Cinnamyl Alcohol Dehydrogenases Involved in Lignin Formation, Aaron J. Saathoff, Christian M. Tobias, Scott E. Sattler, Eric J. Haas, Paul Twigg, and Gautam Sarath
Corn and Velvetleaf (Abutilon theophrasti ) Transpiration in Response to Drying Soil, Jared Schmidt, Erin E. Blankenship, and John L. Lindquist
Genes Identified by Visible Mutant Phenotypes Show Increased Bias toward One of Two Subgenomes of Maize, James C. Schnable and Michael Freeling
Dose–Sensitivity, Conserved Non-Coding Sequences, and Duplicate Gene Retention through Multiple Tetraploidies in the Grasses, James C. Schnable, Brent S. Pedersen, Sabarinath Subramaniam, and Michael Freeling
Use of natural variation reveals core genes in the transcriptome of iron-deficient Arabidopsis thaliana roots, Ricardo J. Stein and Brian M. Waters
Screening Synteny Blocks in Pairwise Genome Comparisons through Integer Programming, Haibao Tang, Eric Lyons, Brent S. Pedersen, James C. Schnable, Andrew H. Paterson, and Michael Freeling
No-tillage increases soil profile carbon and nitrogen under long-term rainfed cropping systems, Gary E. Varvel and Wallace Wilhelm
Switchgrass, Kenneth P. Vogel, Gautam Sarath, Aaron J. Saathoff, and Robert B. Mitchell
The role of transition metal homeostasis in plant seed development, Elsbeth L. Walker and Brian M. Waters
Moving magnesium in plant cells, Brian M. Waters
Moving micronutrients from the soil to the seeds: Genes and physiological processes from a biofortification perspective, Brian M. Waters and Renuka P. Sankaran
High Yield Corn Production Can Result in High Nitrogen Use Efficiency, Charles S. Wortmann, Charles A. Shapiro, Achim Dobermann, Richard B. Ferguson, Gary W. Hergert, Daniel Walters, and David Tarkalson
Integrating Management of Soil Nitrogen and Weeds, Samuel E. Wortman, Adam Davis, Brian J. Schutte, and John L. Lindquist
Soil Fertility and Crop Yields in Long-term Organic and Conventional Cropping Systems in Eastern Nebraska, Samuel E. Wortman, Tomie D. Galusha, Stephen C. Mason, and Charles A. Francis
2010
Complementary genetic and genomic approaches help characterize the linkage group I seed protein QTL in soybean, Yung-Tsi Bolon, Bindu Joseph, Steven B Cannon, Michelle A Graham, Brian W. Diers, Andrew Farmer, Gregory D May, Gary J. Muehlbauer, James Specht, Zheng Jin Tu, Nathan Weeks, Wayne W Xu, Randy C. Shoemaker, and Carroll P Vance
Emissions Savings in the Corn-Ethanol Life Cycle from Feeding Coproducts to Livestock, Virgil R. Bremer, Adam Liska, Terry J. Klopfenstein, Galen E. Erickson, Haishun Yang, Daniel T. Walters, and Kenneth G. Cassman
Crop Registration: The Pathway to Public Access of Plant Genetic Materials to Build Crops for the Future, D. D. Ellis, K. A. Garland-Campbell, J. A. Grotenhuis, M. M. Jenderek, and Jeffrey F. Pedersen
‘Food for Life’: Looking beyond the Horizon, Charles A. Francis and John W. Doran
Re-examining the role of ABA as the primary long-distance signal produced by water-stressed roots, Jason Q. D. Goodger and Daniel P. Schachtman
Fertilizer Rate Effects on Forage Yield Stability and Nutrient Uptake of Midland Bermudagrass, John A. Guretzky, Maru K. Kering, Jagadeesh Mosali, Eddie Funderburg, and Jon T. Biermacher
Inoculation with Arbuscular Mycorrhizal Fungi or Crop Rotation with Mycorrhizal Plants Improves the Growth of Maize in Limed Acid Sulfate Soil, Hasao Higo, Katsunori Isobe, Dong-Jin Kang, Kazuhiro Ujie, Rhae A. Drijber, and Ryuichi Ishii
Spring Grazing Impacts on the Vegetation of Reed Canarygrass–Invaded Wetlands, Heidi Hilhouse, Susan J. Tunnell, and James L. Stubbendieck
Good Agricultural Practices for Food Safety of Fresh Produce, Laurie Hodges
High-throughput SNP discovery through deep resequencing of a reduced representation library to anchor and orient scaffolds in the soybean whole genome sequence, David L. Hyten, Steven B Cannon, Qijian Song, Nathan Weeks, Edward W Fickus, Randy C Shoemaker, James E. Specht, Andrew Farmer, Gregory D May, and Perry B Cregan
High-throughput SNP discovery and assay development in common bean, David L. Hyten, Qijian Song, Edward W. Fickus, Charles V. Quigley, Jong-Sung Lim, Ik-Young Choi, Eun-Young Hwang, Marcial Pastor-Corrales, and Perry B. Cregan
A High Density Integrated Genetic Linkage Map of Soybean and the Development of a 1536 Universal Soy Linkage Panel for Quantitative Trait Locus Mapping, D. L. Hyten, Ik-Young Choi, Qijian Song, James E. Specht, Thomas E. Carter Jr., Randy C. Shoemaker, Eun-Young Hwang, Lakshmi K. Matukumalli, and P. B. Cregan
Factors Affecting the Alkaline Cooking Performance of Selected Corn and Sorghum Hybrids, Weston B. Johnson, Wajira S. Ratnayake, David S. Jackson, Kyung-Min Lee, Timothy J. Herrman, Scott R. Bean, and Stephen Mason
Economic Potential of Substituting Legumes for Synthetic Nitrogen in Warm Season Perennial Grasses used for Stocker Cattle Grazing, Maru Kering, John Biermacher, Ryan Reuter, Twain Butler, Job D. Springer, James Rogers, John Blanton, Joe Bouton, and John A. Guretzky
Fine mapping the soybean aphid resistance gene Rag1 in soybean, Ki-Seung Kim, Stephanie Bellendir, Karen A. Hudson, Curtis B. Hill, Glen L. Hartman, D. L. Hyten, Matthew E. Hudson, and Brian W. Diers
Fine mapping of the soybean aphid-resistance gene Rag2 in soybean PI 200538, Ki-Seung Kim, Curtis B. Hill, Glen L. Hartman, D. L. Hyten, Matthew E. Hudson, and Brian W. Diers
Fine Mapping of the SCN Resistance Locus rhg1-b from PI 88788, Myungsik Kim, David L. Hyten, Andrew F. Bent, and Brian W. Diers
Effect of Nitrogen Addition and Weed Interference on Soil Nitrogen and Corn Nitrogen Nutrition, John L. Lindquist, Sean P. Evans, Charles A. Shapiro, and Stevan Z. Knezevic
Structural and Functional Divergence of a 1-Mb Duplicated Region in the Soybean (Glycine max) Genome and Comparison to an Orthologous Region from Phaseolus vulgaris, Jer-Young Lin, Robert M. Stupar, Christian Hans, D. L. Hyten, and Scott A. Jackson
Selecting Strawberry Cultivars for Winter Greenhouse Production, Ellen T. Paparozzi, Stacy A. Adams, George E. Meyer, M. Elizabeth Conley, Vicki L. Schlegel, Erin E. Blankenship, and Paul E. Read
Heterosis in Sweet Sorghum and Selection of a New Sweet Sorghum Hybrid for Use in Syrup Production in Appalachia, T. W. Pfeiffer, M. J. Bitzer, J. J. Toy, and Jeffrey F. Pedersen
Evaluation Of The Intercom Model For Predicting Growth Of Forest Herbs, Zorica S. Popović and J. L. Lindquist
SPRING SEED GUIDE 2010: NEBRASKA VARIETY AND HYBRID TESTS -- SOYBEANS, Teshome Regassa, Robert N. Klein, Bruce Anderson, Charles A. Shapiro, and Jim Krall
Tomato root transcriptome response to a nitrogen-enriched soil patch, Daniel R. Ruzicka, Felipe H. Barrios-Masias, Natasha T. Hausmann, Louise E. Jackson, and Daniel P. Schachtman
Growth And Fitness Components Of Wild × Cultivated Sorghum Bicolor (Poaceae) Hybrids In Nebraska, Lilyrani Sahoo, Jared J. Schmidt, Jeffrey F. Pedersen, Donald Lee, and John L. Lindquist
Transgenic maize lines with cell-type specific expression of fluorescent proteins in plastids, Amir Sattarzadeh, Jonathan Fuller, Salvador Moguel, Katia Wostrikoff, Shirley Sato, Sarah Covshoff, Tom Clemente, Maureen Hanson, and David Stern
Efficacy of Singular and Stacked brown midrib 6 and 12 in the Modification of Lignocellulose and Grain Chemistry, Scott E. Sattler, Deanna L. Funnell-Harris, and Jeffrey F. Pedersen
Efficient Methods of Estimating Switchgrass Biomass Supplies, Marty R. Schmer, Robert B. Mitchell, Kenneth P. Vogel, Walter H. Schacht, and David B. Marx
Genome sequence of the palaeopolyploid soybean, Jeremy Schmutz, Steven B. Cannon, Jessica Schlueter, Jianxin Ma, Therese Mitros, William Nelson, David L. Hyten, Qijian Song, Jay J. Thelen, Jianlin Cheng, Dong Xu, Uffe Hellsten, Gregory D. May, Yeisoo Yu, Tetsuya Sakurai, Taishi Umezawa, Madan K. Bhattacharyya, Devinder Sandhu, Babu Valliyodan, Erika Lindquist, Myron Peto, David Grant, Shengqiang Shu, David Goodstein, Kerrie Barry, Montona Futrell-Griggs, Brian Abernathy, Jianchang Du, Zhixi Tian, Liucun Zhu, Navdeep Gill, Trupti Joshi, Marc Libault, Ananad Sethuraman, Xue-Cheng Zhang, Kazuo Shinozaki, Henry T. Nguyen, Rod A. Wing, Perry Cregan, James E. Specht, Jane Grimwood, Dan Rokhsar, Gary Stacey, Randy C. Shoemaker, and Scott A. Jackson
An Integrative Approach to Genomic Introgression Mapping, Andrew J. Severin, Gregory A. Peiffer, Wayne W. Xu, D. L. Hyten, Bruna Bucciarelli, Jamie A. O'Rourke, Yung-Tsi Bolon, David Grant, Andrew Farmer, Gregory D. May, Carroll P. Vance, Randy C. Shoemaker, and Robert M. Stupar
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome, Andrew J. Severin, Jenna L. Woody, Yung-Tsi Bolon, Bindu Joseph, Brian W. Diers, Andrew Farmer, Gary J. Muehlbauer, Rex T. Nelson, David Grant, James E. Specht, Michelle A. Graham, Steven B. Cannon, Gregory D. May, Carroll P. Vance, and Randy C. Shoemaker
Abundance of SSR Motifs and Development of Candidate Polymorphic SSR Markers (BARCSOYSSR_1.0) in Soybean, Qijian Song, Gaofeng Jia, Youlin Zhu, David Grant, Rex T. Nelson, Eun-Young Hwang, D. L. Hyten, and P. B. Cregan
Influences of wind and sandblasting on the endangered blowout penstemon, James Stubbendieck, Cheryl D. Dunn, Heidi L. Hillhouse, and L. M. Landholt
Artificial selection for determinate growth habit in soybean, Zhixi Tian, Xiaobo Wang, Rian Lee, Yinghui Li, James E. Specht, Randall L. Nelson, Phillip E. McClean, Lijuan Qiu, and Jianxin Ma
SoyDB: a knowledge database of soybean transcription factors, Zheng Wang, Marc Libault, Trupti Joshi, Babu Valliyodan, Henry T. Nguyen, Dong Xu, Gary Stacey, and Jianlin Cheng
Following Tetraploidy in Maize, a Short Deletion Mechanism Removed Genes Preferentially from One of the Two Homeologs, Margaret R. Woodhouse, James C. Schnable, Brent S. Pedersen, Eric Lyons, Damon Lisch, Shabarinath Subramaniam, and Michael Freeling
Dryland Performance of Sweet Sorghum and Grain Crops for Biofuel in Nebraska, Charles S. Wortmann, Adam Liska, Richard B. Ferguson, Drew J. Lyon, R. N. Klein, and Ismail M. Dweikat
Increased Weed Diversity, Density and Above-ground Biomass in Long-term Organic Crop Rotations, Samuel E. Wortman, John L. Lindquist, Milton J. Haar, and Charles A. Francis
2009
Blue Fescue Overseeding Improves Performance of Fairway Height Buffalograsses, Bekele G. Abeyo, Robert C. Shearman, Roch E. Gaussoin, Leonard A. Wit, Desalegn D. Serba, and Ugur Bilgili
Farmers and Nature Conservation: What is Known about Attitudes, Context Factors and Actions Affecting Conservation?, Johan Ahnström, Jenny Höckert, Hanna L. Bergea, Charles A. Francis, Peter Skelton, and Lars Hallgren
Scaling up of CO2 fluxes from leaf to canopy in maize-based agroecosystems, Timothy J. Arkebauer, Elizabeth A. Walter-Shea, Mark A. Mesarch, Andrew E. Suyker, and Shashi Verma
Quantum Simulation of High-Order Harmonic Spectra of the Hydrogen Atom, A. D. Bandrauk, S. Chelkowski, Dennis J. Diestler, J. Manz, and K.-J. Yuan
Effects of Nitrogen Supply on the Root Morphology of Corn and Velvetleaf, Kimberly D. Bonifas and John L. Lindquist
Mapping and Confirmation of a New Allele at Rpp1 from Soybean PI 594538A Conferring RB Lesion–Type Resistance to Soybean Rust, Nanda Chakraborty, Joe Curley, Reid D. Frederick, D. L. Hyten, Randall L. Nelson, Glen L. Hartman, and Brian W. Diers
Non-Destructive Determination of Maize Leaf and Canopy Chlorophyll Content, Veronica Ciganda, Anatoly A. Gitelson, and James S. Schepers
Limits to maize productivity in the Western Corn-Belt: A simulation analysis for fully irrigated and rainfed conditions, Patricio Grassini, Haishun Yang, and Kenneth G. Cassman
Evaluation of the waxy endosperm trait in proso millet (Panicum miliaceum), Robert A. Graybosch and D. D. Baltensperger
Polyploidy creates higher diversity among Cynodon accessions as assessed by molecular markers, Osman Gulsen, Songul Sever-Mutlu, Nedim Mutlu, Metin Tuna, Osman Karaguzel, Robert C. Shearman, Terrance P. Riordan, and Tiffany M. Heng-Moss
Grazing Lands and Soil Carbon Storage, John A. Guretzky
Research emphasis – forage and bioenergy crop management, John A. Guretzky
Switchgrass for Forage and Bioenergy: II. Effects of P and K fertilization, John A. Guretzky, Maru Kering, Jon Biermacher, and Billy Cook
Bulked Segregant Analysis Using the GoldenGate Assay to Locate the Rpp3 Locus that Confers Resistance to Soybean Rust in Soybean, D. L. Hyten, James R. Smith, Reid D. Frederick, Mark L. Tucker, Qijian Song, and P. B. Cregan
Switchgrass for Forage and Bioenergy: I. Effects of Nitrogen Rate and Harvest System, Maru Kering, J. T. Biermacher, Billy Cook, and John A. Guretzky
Detection and validation of single feature polymorphisms using RNA expression data from a rice genome array, Sung-Hyun Kim, Prasanna R. Bhat, Xinping Cui, Harkamal Walia, Jin Xu, Steve Wanamaker, Abdelbagi M. Ismail, Clyde Wilson, and Timothy J. Close
Response to Plevin: Implications for Life Cycle Emissions Regulations, Adam Liska and Kenneth G. Cassman
Crop Yield Gaps: Their Importance, Magnitudes, and Causes, David B. Lobell, Kenneth G. Cassman, and Christopher B. Field
Gibberellic Acid Promotes Seed Germination in Penstemon digitalis cv. Husker Red, Anderson Machado de Mello, Nereu Augusto Streck, Erin E. Blankenship, and Ellen Paparozzi
Nutrient and Chemical Properties of Aging Golf Course Putting Greens as Impacted by Soil Depth and Mat Development, Ty A. McClellan, Roch E. Gaussoin, Bob Shearman, Charles S. Wortmann, Martha Mamo, Garald L. Horse, and David B. Marx
Forage Yields from 2008-2009 Small Grains, Jagadeesh Mosali, John A. Guretzky, M. Saha, J. Baker, and S. Norton