Statistics, Department of
The R Journal
A peer-reviewed, open-access publication of the R Foundation for Statistical Computing.
2017
fourierin: An R package to compute Fourier integrals, Guillermo Basulto-Elias, Alicia Carriquiry, Kris De Brabanter, and Daniel J. Nordman
Splitting It Up: The spduration Split-Population Duration Regression Package for Time-Varying Covariates, Andreas Beger, Daniel W. Hill Jr, Nils W. Metternich, Shahryar Minhas, and Michael D. Ward
afmToolkit: An R Package for Automated AFM Force-Distance Curves Analysis, Rafael Benítez, Vicente J. Bolós, and José-Luis Toca-Herrera
LeArEst: Length and Area Estimation from Data Measured with Additive Error, Mirta Benšić, Petar Taler, Safet Hamedović, Emmanuel Karlo Nyarko, and Kristian Sabo
Conference Report: European R Users Meeting 2016, Maciej Beręsewicz, Adolfo Alvarez, Przemysław Biecek, Marcin K. Dyderski, Marcin Kosinski, Jakub Nowosad, Kamil Rotter, Alicja Szabelska-Beręsewicz, Marcin Szymkowiak, Łukasz Wawrowski, and Joanna Zyprych-Walczak
News from the Bioconductor Project, Bioconductor Core Team
News from the Bioconductor Project, Bioconductor Core Team
Editorial, Roger Bivand
Editorial, Roger Bivand
An Introduction to Rocker: Docker Containers for R, Carl Boettiger and Dirk Eddelbuettel
PSF: Introduction to R Package for Pattern Sequence Based Forecasting Algorithm, Neeraj Bokde, Gualberto Asencio-Cortés, Francisco Martínez-Álvarez, and Kishore Kulat
Forwards Column, Stella Bollmann, Dianne Cook, Jasmine Dumas, John Fox, Julie Josse, Oliver Keyes, Carolin Strobl, Heather Turner, and Rudolf Debelak
smoof: Single- and Multi-Objective Optimization Test Functions, Jakob Bossek
Visualization of Regression Models Using visreg, Patrick Breheny and Woodrow Burchett
glmmTMB Balances Speed and Flexibility Among Packages for Zero-inflated Generalized Linear Mixed Modeling, Mollie E. Brooks, Kasper Kristensen, Koen J. van Benthem, Arni Magnusson, Casper W. Berg, Anders Nielsen, Hans J. Skaug, Martin Mächler, and Benjamin M. Bolker
openEBGM: An R Implementation of the Gamma-Poisson Shrinker Data Mining Model, Travis Canida and John Ihrie
Counterfactual: An R Package for Counterfactual Analysis, Mingli Chen, Victor Chernozhukov, Iván Fernández-Val, and Blaise Melly
milr: Multiple-Instance Logistic Regression with Lasso Penalty, Ping-Yang Chen, Ching-Chuan Chen, Chun-Hao Yang, Sheng-Mao Chang, and Kuo-Jung Lee
EMSaov: An R Package for the Analysis of Variance with the Expected Mean Squares and its Shiny Application, Hye-Min Choe, Mijeong Kim, and Eun-Kyung Lee
alineR: An R Package for Optimizing Feature-Weighted Alignments and Linguistic Distances, Sean S. Downey, Guowei Sun, and Peter Norquest
Implementing a Metapopulation Bass Diffusion Model using the R Package deSolve, Jim Duggan
autoimage: Multiple Heat Maps for Projected Coordinates, Joshua P. French
Simulating Probabilistic Long-Term Effects in Models with Temporal Dependence, Christopher Gandrud and Laron K. Williams
spcadjust: An R Package for Adjusting for Estimation Error in Control Charts, Axel Gandy and Jan Terje Kvaløy
R Teaching Column, Matthias Gehrke, Reed Davis, Norman Matloff, Paul Thompson, Tiffany Chen, Emily Watkins, and Laurel Beckett
pdp: An R Package for Constructing Partial Dependence Plots, Brandon M. Greenwell
anomalyDetection: Implementation of Augmented Network Log Anomaly Detection Procedures, Robert J. Gutierrez, Bradley C. Boehmke, Air Force Institute of Technology, Cade M. Saie, and Trevor J. Bihl
arulesViz: Interactive Visualization of Association Rules with R, Michael Hahsler
Partial Rank Data with the hyper2 Package: Likelihood Functions for Generalized Bradley-Terry Models, Robin K. S Hankin
Update of the nlme Package to Allow a Fixed Standard Deviation of the Residual Error, Simon H. Heisterkamp, Engelbertus van Willigen, Paul-Matthias Diderichsen, and John Maringwa
ider: Intrinsic Dimension Estimation with R, Hideitsu Hino
Changes on CRAN, Kurt Hornik, Uwe Ligges, and Achim Zeileis
Changes on CRAN, Kurt Hornik, Uwe Ligges, and Achim Zeileis
R Foundation News, Torsten Hothorn
R Foundation News, Torsten Hothorn
liureg: A Comprehensive R Package for the Liu Estimation of Linear Regression Model with Collinear Regressors, Muhammad Imdadullah, Muhammad Aslam, and Saima Altaf
PGEE: An R Package for Analysis of Longitudinal Data with High-Dimensional Covariates, Gul Inan and Lan Wang
queueing: A Package For Analysis Of Queueing Networks and Models in R, Pedro Cañadilla Jiménez and Yolanda Román Montoya
Retrieval and Analysis of Eurostat Open Data with the eurostat Package, Leo Lahti, Janne Huovari, Markus Kainu, and Przemysław Biecek
checkmate: Fast Argument Checks for Defensive R Programming, Michel Lang
GsymPoint: An R Package to Estimate the Generalized Symmetry Point, an Optimal Cut-off Point for Binary Classification in Continuous Diagnostic Tests, Mónica López-Ratón, Elisa M. Molanes-López, Emilio Letón, and Carmen Cadarso-Suárez
MDplot: Visualise Molecular Dynamics, Christian Margreitter and Chris Oostenbrink
flan: An R Package for Inference on Mutation Models, Adrien Mazoyer, Rémy Drouilhet, Stéphane Despréaux, and Bernard Ycart
mle.tools: An R Package for Maximum Likelihood Bias Correction, Josmar Mazucheli, André Felipe B. Menezes, and Saralees Nadarajah
Allele Imputation and Haplotype Determination from Databases Composed of Nuclear Families, Nathan Medina-Rodríguez and Ángelo Santana
dGAselID: An R Package for Selecting a Variable Number of Features in High Dimensional Data, Nicolae Teodor Melita and Stefan Holban
The NoiseFiltersR Package: Label Noise Preprocessing in R, Pablo Morales, Julián Luengo, Luís P.F. Garcia, Ana C. Lorena, and André C.P.L.F. de Carvalho
imputeTS: Time Series Missing Value Imputation in R, Steffen Moritz and Thomas Bartz-Beielstein
RQGIS: Integrating R with QGIS for Statistical Geocomputing, Jannes Muenchow, Patrick Schratz, and Alexander Brenning
coxphMIC: An R Package for Sparse Estimation of Cox Proportional Hazards Models via Approximated Information Criteria, Razieh Nabi and Xiaogang Su
Weighted Effect Coding for Observational Data with wec, Rense Nieuwenhuis, Manfred te Grotenhuis, and Ben Pelzer
minval: An R package for MINimal VALidation of Stoichiometric Reactions, Daniel Osorio, Janneth González, and Andrés Pinzón
IsoGeneGUI: Multiple Approaches for Dose-Response Analysis of Microarray Data Using R, Martin Otava, Rudradev Sengupta, Ziv Shkedy, Dan Lin, Setia Pramana, Tobias Verbeke, Philippe Haldermans, Ludwig A. Hothorn, Daniel Gerhard, Rebecca M. Kuiper, Florian Klinglmueller, and Adetayo Kasim
riskRegression: Predicting the Risk of an Event using Cox Regression Models, Brice Ozenne, Anne Lyngholm Sørensen, Thomas Scheike, Christian Torp-Pedersen, and Thomas Alexander Gerds
BayesBinMix: An R Package for Model Based Clustering of Multivariate Binary Data, Panagiotis Papastamoulis and Magnus Rattray
ctmcd: An R Package for Estimating the Parameters of a Continuous-Time Markov Chain from Discrete-Time Data, Marius Pfeuffer
OrthoPanels: An R Package for Estimating a Dynamic Panel Model with Fixed Effects Using the Orthogonal Reparameterization Approach, Mark Pickup, Paul Gustafson, Davor Cubranic, and Geoffrey Evans
CRTgeeDR: An R Package for Doubly Robust Generalized Estimating Equations Estimations in Cluster Randomized Trials with Missing Data, Melanie Prague, Rui Wang, and Victor De Gruttola
Multilabel Classification with R Package mlr, Philipp Probst, Quay Au, Giuseppe Casalicchio, Clemens Stachl, and Bernd Bischl
The mosaic Package: Helping Students to Think with Data Using R, Randall Pruim, Daniel T. Kaplan, and Nicholas J. Horton
Changes in R, R Core Team
Changes in R, R Core Team
anchoredDistr: A Package for the Bayesian Inversion of Geostatistical Parameters with Multi-type and Multi-scale Data, Heather Savoy, Falk Heße, and Yoram Rubin
On Some Extensions to GA Package: Hybrid Optimisation, Parallelisation and Islands Evolution, Luca Scrucca
Simulating Noisy, Nonparametric, and Multivariate Discrete Patterns, Ruby Sharma, Sajal Kumar, Hua Zhong, and Mingzhou Song
adegraphics: An S4 Lattice-Based Package for the Representation of Multivariate Data, Aurélie Siberchicot, Alice Julien-Laferrière, Anne-Béatrice Dufour, Jean Thioulouse, and Stéphane Dray
Discrete Time Markov Chains with R, Giorgio Alfredo Spedicato
BayesBD: An R Package for Bayesian Inference on Image Boundaries, Nicholas Syring and Meng Li
The R Journal (December 2017) 9(2): Complete Issue, The R Foundation
The R Journal (June 2017) 9(1): Complete Issue, The R Foundation
Network Visualization with ggplot2, Sam Tyner, François Briatte, and Heike Hofmann
Conference Report: useR!2017, Tobias Verbeke
The welchADF Package for Robust Hypothesis Testing in Unbalanced Multivariate Mixed Models with Heteroscedastic and Non-normal Data, Pablo J. Villacorta
carx: An R Package to Estimate Censored Autoregressive Time Series with Exogenous Covariates, Chao Wang and Kung-Sik Chan
Market Area Analysis for Retail and Service Locations with MCI, Thomas Wieland
rentrez: An R package for the NCBI eUtils API, David J. Winter
ManlyMix: An R Package for Manly Mixture Modeling, Xuwen Zhu and Volodymyr Melnykov
2016
Design of the TRONCO BioConductor Package for TRanslational ONCOlogy, Marco Antoniotti, Giulio Caravagna, Luca De Sano, Alex Graudenzi, Giancarlo Mauri, Bud Mishra, and Daniele Ramazzotti
keyplayer: An R Package for Locating Key Players in Social Networks, Weihua An and Yu-Hsin Liu
Two-Tier Latent Class IRT Models in R, Silvia Bacci and Francesco Bartolucci
metaplus: An R Package for the Analysis of Robust Meta-Analysis and Meta-Regression, Ken J. Beath
SWMPr: An R Package for Retrieving, Organizing, and Analyzing Environmental Data for Estuaries, Marcus W. Beck
News from the Bioconductor Project, Bioconductor Core Team
News from the Bioconductor Project, Bioconductor Team
Conditional Fractional Gaussian Fields with the Package FieldSim, Alexandre Brouste, Jacques Istas, and Sophie Lambert-Lacroix
Maps, Coordinate Reference Systems and Visualising Geographic Data with mapmisc, Patrick E. Brown
scmamp: Statistical Comparison of Multiple Algorithms in Multiple Problems, Borja Calvo and Guzmán Santafé
hdm: High-Dimensional Metrics, Victor Chernozhukov, Chris Hansen, and Martin Spindler
eiCompare: Comparing Ecological Inference Estimates across EI and EI:RC, Loren Collingwood, Kassra Oskooii, Sergio Garcia-Rios, and Matt Barreto
GMDH: An R Package for Short Term Forecasting via GMDH-Type Neural Network Algorithms, Osman Dag and Ceylan Yozgatligil
rTableICC: An R Package for Random Generation of 22K and RC Contingency Tables, Haydar Demirhan
CryptRndTest: An R Package for Testing the Cryptographic Randomness, Haydar Demirhan and Nihan Bitirim
Calculating Biological Module Enrichment or Depletion and Visualizing Data on Large-scale Molecular Maps with ACSNMineR and RNaviCell Packages, Paul Deveau, Emmanuel Barillot, Valentina Boeva, Andrei Zinovyev, and Eric Bonnet
Stylometry with R: A Package for Computational Text Analysis, Maciej Eder, Jan Rybicki, and Mike Kestemont
micompr: An R Package for Multivariate Independent Comparison of Observations, Nuno Fachada, João Rodrigues, Vitor V. Lopes, Rui C. Martins, and Agostinho C. Rosa
Nonparametric Tests for the Interaction in Two-way Factorial Designs Using R, Jos Feys
Exploring Interaction Effects in Two-Factor Studies using the hiddenf Package in R., Christopher Franck and Jason A. Osborne
Subgroup Discovery with Evolutionary Fuzzy Systems in R: The SDEFSR Package, Ángel M. García, Francisco Charte, Pedro González, Cristóbal J. Carmona, and María J. del Jesus
Qtools: A Collection of Models and Tools for Quantile Inference, Marco Geraci
statmod: Probability Calculations for the Inverse Gaussian Distribution, Göknur Giner and Gordon K. Smyth