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The R Journal




A peer-reviewed, open-access publication of the R Foundation for Statistical Computing.

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2021

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stratamatch: Prognostic Score Stratification Using a Pilot Design, Rachael C. Aikens, Joseph Rigdon, Justin Lee, Michael Baiocchi, Andrew B. Goldstone, Peter Chiu, Y Joseph Woo, and Jonathan H. Chen

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diproperm: An R Package for the DiProPerm Test, Andrew G. Allmon, J.S. Marron, and Michael G. Hudgens

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R Medicine 2020: The Power of Going Virtual, Elizabeth J. Atkinson, Peter D. Higgins, Denise Esserman, Michael J. Kane, Steven J. Schwager, Joseph B. Rickert, Daniella Mark, Mara Alexeev, and Stephan Kadauke

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openSkies - Integration of Aviation Data into the R Ecosystem, Rafael Ayala, Daniel Ayala, Lara Sellés Vidal, and David Ruiz

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Elliptical Symmetry Tests in R, Slad̄ana Babić, Christophe Ley, and Marko Palangetić

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A Unifying Framework for Parallel and Distributed Processing in R using Futures, Henrik Bengtsson

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penPHcure: Variable Selection in Proportional Hazards Cure Model with Time-Varying Covariates, Alessandro Beretta and Cédric Heuchenne

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News from the Bioconductor Project, Bioconductor Core Team

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News from the Bioconductor Project, Bioconductor Core Team

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BayesSPsurv: An R Package to Estimate Bayesian (Spatial) Split-Population Survival Models, Brandon Bolte, Nicolás Schmidt, Sergio Béjar, Nguyen Huynh, and Bumba Mukherjee

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dad: An R Package for Visualisation, Classification and Discrimination of Multivariate Groups Modelled by their Densities, Rachid Boumaza, Pierre Santagostini, Smail Yousfi, and Sabine Demotes-Mainard

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DRHotNet: An R Package for Detecting Differential Risk Hotspots on a Linear Network, Álvaro Briz-Redón, Francisco Martínez-Ruiz, and Francisco Montes

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OneStep: Le Cam's One-step Estimation Procedure, Alexandre Brouste, Christophe Dutang, and Darel Noutsa Mieniedou

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Linear Regression with Stationary Errors: The R Package slm, Emmanuel Caron, Jérôme Dedecker, and Bertrand Michel

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Conference Report of Why R? Turkey 2021, Mustafa Cavus, Olgun Aydin, Ozan Evkaya, Ozancan Ozdemir, Deniz Bezer, and Ugur Dar

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Analyzing Dependence between Point Processes in Time Using IndTestPP, Ana C. Cebrián and Jesús Asín

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volesti: Volume Approximation and Sampling for Convex Polytopes in R, Apostolos Chalkis and Vissarion Fisikopoulos

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Volume Approximation and Sampling for Convex Polytopes in R, Apostolos Chalkis and Vissarion Fisikopoulos

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RPESE: Risk and Performance Estimators Standard Errors with Serially Dependent Data, Anthony-Alexander Christidis and R Douglas Martin

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Unidimensional and Multidimensional Methods for Recurrence Quantification Analysis with crqa, Moreno I. Coco, Dan Mønster, Giuseppe Leonardi, Rick Dale, and Sebastian Wallot

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Editorial, Dianne Cook

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Editorial, Dianne Cook

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MAINT.Data: Modelling and Analysing Interval Data in R, A Pedro Duarte Silva, Paula Brito, Peter Filzmoser, and José G. Dias

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The bdpar Package: Big Data Pipelining Architecture for R, Miguel Ferreiro-Díaz, Tomás R. Cotos-Yáñez, José R. Méndez, and David Ruano-Ordás

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Statistical Quality Control with the qcr Package, Miguel Flores, Rubén Fernández-Casal, Salvador Naya, and Javier Tarrío-Saavedra

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Generalized Linear Randomized Response Modeling using GLMMRR, Jean-Paul Fox, Konrad Klotzke, and Duco Veen

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pdynmc: A Package for Estimating Linear Dynamic Panel Data Models Based on Nonlinear Moment Conditions, Markus Fritsch, Andrew Adrian Yu Pua, and Joachim Schnurbus

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spNetwork: A Package for Network Kernel Density Estimation, Jeremy Gelb

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An R Package for Robust Solution to the Behrens-Fisher Problem, Gamze Güven, Şükrü Acıtaş, Hatice Şamkar, and Birdal Şenoğlu

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RobustBF: An R Package for Robust Solution to the Behrens-Fisher Problem, Gamze Güven, Şükrü Acıtaş, Hatice Şamkar, and Birdal Şenoğlu

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bssm: Bayesian Inference of Non-linear and Non-Gaussian State Space Models in R, Jouni Helske and Matti Vihola

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exPrior: An R Package for the Formulation of Ex-Situ Priors, Falk Heße, Karina Cucchi, Nura Kawa, and Yoram Rubin

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Wide-to-tall Data Reshaping Using Regular Expressions and the nc Package, Toby Dylan Hocking

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Changes on CRAN, Kurt Hornik, Uwe Ligges, and Achim Zeileis

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Changes on CRAN, Kurt Hornik, Uwe Ligges, and Achim Zeileis

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R Foundation News, Torsten Hothorn

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R Foundation News, Torsten Hothorn

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krippendorffsalpha: An R Package for Measuring Agreement Using Krippendorff's Alpha Coefficient, John Hughes

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Multiple Imputation and Synthetic Data Generation with NPBayesImputeCat, Jingchen Hu, Olanrewaju Akande, and Quanli Wang

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spfilteR: An R package for Semiparametric Spatial Filtering with Eigenvectors in (Generalized) Linear Models, Sebastian Juhl

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Changes in R 4.0–4.1, Tomas Kalibera, Sebastian Meyer, and Kurt Hornik

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Changes in R, Tomas Kalibera, Sebastian Meyer, Kurt Hornik, Gennadiy Starostin, and Luke Tierney

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Towards a Grammar for Processing Clinical Trial Data, Michael J. Kane

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Automating Reproducible, Collaborative Clinical Trial Document Generation with the listdown Package, Michael Kane, Xun Jiang, and Simon Urbanek

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SEEDCCA: An Integrated R-Package for Canonical Correlation Analysis and Partial Least Squares, Bo-Young Kim, Yunju Im, and Jae Keun Yoo

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Regularized Transformation Models: The tramnet Package, Lucas Kook and Torsten Hothorn

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RLumCarlo: Simulating Cold Light using Monte Carlo Methods, Sebastian Kreutzer, Johannes Friedrich, Vasilis Pagonis, Christian Laag, Ena Rajovic, and Christoph Schmidt

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We Need Trustworthy R Packages, William Michael Landau

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PASSED: Calculate Power and Sample Size for Two Sample Tests, Jinpu Li, Ryan .. Knigge, Kaiyi Chen, and Emily V. Leary

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PAsso: An R Package for Assessing Partial Association between Ordinal Variables, Shaobo Li, Xiaorui Zhu, Yuejie Chen, and Dungang Liu

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npcure: An R Package for Nonparametric Inference in Mixture Cure Models, Ana López-Cheda, M Amalia Jácome, and Ignacio López-de-Ullibarri

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An R package for Non-Normal Multivariate Distributions: Simulation and Probability Calculations from Multivariate Lomax (Pareto Type II) and Other Related Distributions, Zhixin Lun and Ravindra Khattree

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bcmixed: A Package for Median Inference on Longitudinal Data with the Box–Cox Transformation, Kazushi Maruo, Ryota Ishii, Yusuke Yamaguchi, and Masahiko Gosho

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miRecSurv Package: Prentice-Williams-Peterson Models with Multiple Imputation of Unknown Number of Previous Episodes, David Moriña, Gilma Hernández-Herrera, and Albert Navarro

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gofCopula: Goodness-of-Fit Tests for Copulae, Ostap Okhrin, Simon Trimborn, and Martin Waltz

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g2f as a Novel Tool to Find and Fill Gaps in Metabolic Networks, Daniel Osorio, Kelly Botero, Andrés Pinzón Velasco, Nicolás Mendoza-Mejía, Felipe Rojas-Rodríguez, George Barreto, and Janneth González

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lg: An R package for Local Gaussian Approximations, Håkon Otneim

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msae: An R Package of Multivariate Fay-Herriot Models for Small Area Estimation, Novia Permatasari and Azka Ubaidillah

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Finding Optimal Normalizing Transformations via bestNormalize, Ryan A. Peterson

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Robust and Efficient Optimization Using a Marquardt-Levenberg Algorithm with R Package marqLevAlg, Viviane Philipps, Boris P. Hejblum, Mélanie Prague, Daniel Commenges, and Cécile Proust-Lima

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MatchThem: Matching and Weighting after Multiple Imputation, Farhad Pishgar, Noah Greifer, Clémence Leyrat, and Elizabeth Stuart

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ROBustness In Network (robin): An R Package for Comparison and Validation of Communities, Valeria Policastro, Dario Righelli, Annamaria Carissimo, Luisa Cutillo, and Italia De Feis

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CompModels: A Suite of Computer Model Test Functions for Bayesian Optimization, Tony Pourmohamad

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The vote Package: Single Transferable Vote and Other Electoral Systems in R, Adrian E. Raftery, Hana Ševčíková, and Bernard W. Silverman

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A GUIded Tour of Bayesian Regression, Andrés Ramírez–Hassan and Mateo Graciano-Londoño

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Analysis of Corneal Data in R with the rPACI Package, Darío Ramos-López and Ana D. Maldonado

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Package wsbackfit for Smooth Backfitting Estimation of Generalized Structured Models, Javier Roca-Pardiñas, María Xosé Rodríguez-Álvarez, and Stefan Sperlich

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ROCnReg: An R Package for Receiver Operating Characteristic Curve Inference with and without Covariates, María Xosé Rodríguez-Álvarez and Vanda Inácio

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cat.dt: An R Package for Fast Construction of Accurate Computerized Adaptive Tests using Decision Trees, Javier Rodríguez-Cuadrado, Juan C. Laria, and David Delgado-Gómez

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IndexNumber: An R Package for Measuring the Evolution of Magnitudes, Alejandro Saavedra-Nieves and Paula Saavedra-Nieves

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The R Developer Community Does Have a Strong Software Engineering Culture, Maëlle Salmon and Karthik Ram

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DChaos: An R Package for Chaotic Time Series Analysis, Julio E. Sandubete and Lorenzo Escot

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NGSSEML: Non-Gaussian State Space with Exact Marginal Likelihood, Thiago R. Santos, Glaura C. Franco, and Dani Gamerman

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Working with CRSP/COMPUSTAT in R: Reproducible Empirical Asset Pricing, Majeed Simaan

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Reproducible Summary Tables with the gtsummary Package, Daniel D. Sjoberg, Karissa Whiting, Michael Curry, Jessica A. Lavery, and Joseph Larmarange

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Benchmarking R Packages for Calculation of Persistent Homology, Eashwar V. Somasundaram, Shael E. Brown, Adam Litzler, Jacob G. Scott, and Raoul R. Wadhwa

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distr6: R6 Object-Oriented Probability Distributions Interface in R, Raphael Sonabend and Franz J. Király

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survidm: An R package for Inference and Prediction in an Illness-Death Model, Gustavo Soutinho, Marta Sestelo, and Luís Meira-Machado

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garchx: Flexible and Robust GARCH-X Modeling, Genaro Sucarrat

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tramME: Mixed-Effects Transformation Models Using Template Model Builder, Bálint Tamási and Torsten Hothorn

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Automatic Time Series Forecasting with Ata Method in R: ATAforecasting Package, Ali Sabri Taylan, Güçkan Yapar, and Hanife Taylan Selamlar

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The R Journal (December 2021) 13(2): Complete Issue, The R Foundation

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The R Journal (June 2021) 13(1): Complete Issue, The R Foundation

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The HBV.IANIGLA Hydrological Model, Ezequiel Toum, Mariano H. Masiokas, Ricardo Villalba, Pierre Pitte, and Lucas Ruiz

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News from the Forwards Taskforce, Heather Turner

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News from the Forwards Taskforce, Heather Turner

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A New Versatile Discrete Distribution, Rolf Turner

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PASSED: Calculate Power and Sample Size for Two Sample Tests, University of Missouri, Ryan P. Knigge, Kaiyi Chen, and Emily V. Leary

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The R Quest: From Users to Developers, Simon Urbanek

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A Method for Deriving Information from Running R Code, Mark P. J. van der Loo

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Rejoinder: Software Engineering and R Programming, Melina Vidoni

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Software Engineering and R Programming: A Call for Research, Melina Vidoni

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clustcurv: An R Package for Determining Groups in Multiple Curves, Nora M. Villanueva, Marta Sestelo, Luis Meira-Machado, and Javier Roca-Pardiñas

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The R Package smicd: Statistical Methods for Interval-Censored Data, Paul Walter

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Conversations in Time: Interactive Visualization to Explore Structured Temporal Data, Earo Wang and Dianne Cook

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JMcmprsk: An R Package for Joint Modelling of Longitudinal and Survival Data with Competing Risks, Hong Wang, Ning Li, Shanpeng Li, and Gang Li

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StratigrapheR: Concepts for Litholog Generation in R, Sébastien Wouters, Anne-Christine Da Silva, Frédéric Boulvain, and Xavier Devleeschouwer

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Estimating Social Influence Effects in Networks Using a Latent Space Adjusted Approach in R, Ran Xu

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mgee2: An R Package for Marginal Analysis of Longitudinal Ordinal Data with Misclassified Responses and Covariates, Yuliang Xu, Shuo Shuo Liu, and Grace Y. Yi

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BayesSenMC: An R package for Bayesian Sensitivity Analysis of Misclassification, Jinhui Yang, Lifeng Lin, and Haitao Chu