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2014

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2015 SPRING SEED GUIDE, Teshome Regassa and Charles A. Shapiro

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Identification of a Sphingolipid α-Glucuronosyltransferase That Is Essential for Pollen Function in Arabidopsis, Emilie A. Rennie, Berit Ebert, Godfrey P. Miles, Rebecca E. Cahoon, Katy M. Christiansen, Solomon Stonebloom, Hoda Khatab, David Twell, Christopher J. Petzold, Paul D. Adams, Paul Dupree, Joshua L. Heazlewood, Edgar B. Cahoon, and Henrik Vibe Scheller

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Senescence, dormancy and tillering in perennial C4 grasses, Gautam Sarath, Lisa Baird, and Robert Mitchell

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A reference genome for common bean and genome-wide analysis of dual domestications, Jeremy Schmutz, Phillip E. McClean, Sujan Mamidi, G. Albert Wu, Steven B. Cannon, Jane Grimwood, Jerry Jenkins, Shengqiang Shu, Qijian Song, Carolina Chavarro, Mirayda Torres-Torres, Valerie Geffroy, Samira Mafi Moghaddam, Dongying Gao, Brian Abernathy, Kerrie Barry, Matthew Blair, Mark A. Brick, Mansi Chovatia, Paul Gepts, David M. Goodstein, Michael Gonzales, Uffe Hellsten, D. L. Hyten, Gaofeng Jia, James D. Kelly, Dave Kudrna, Rian Lee, Manon M.S. Richard, Phillip N. Miklas, Juan M. Osorno, Josiane Rodrigues, Vincent Thareau, Carlos A. Urrea Florez, Mei Wang, Yeisoo Yu, Ming Zhang, Rod A. Wing, P. B. Cregan, Daniel S. Rokhsar, and Scott A. Jackson

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Functional genomics and microbiome profiling of the Asian longhorned beetle (Anoplophora glabripennis) reveal insights into the digestive physiology and nutritional ecology of wood feeding beetles, Erin D. Scully, Scott M. Geib, John E. Carlson, Ming Tien, Duane McKenna, and Kelli Hoover

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Detection and Confirmation of Quantitative Trait Loci for Soybean Seed Isoflavones, Christopher J. Smallwood, Catherine N. Nyinyi, Dean A. Kopsell, Carl E. Sams, Dennis R. West, Pengyin Chen, Stella K. Kantartzi, P. B. Cregan, D. L. Hyten, and Vincent R. Pantalone

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Synthesis of the effect of fire on lesser prairie‐chickens, Eric Thacker and Dirac L. Twidwell Jr

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Drought-induced woody plant mortality in an encroached semi-arid savanna depends on topoedaphic factors and land management, Dirac L. Twidwell Jr, Carissa L. Wonkka, Charles A. Taylor, Chris B. Zou, Jeremiah J. Twidwell, and William E. Rogers

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Quantitative trait locus analysis of unsaturated fatty acids in a recombinant inbred population of soybean, Xianzhi Wang, Guo-Liang Jiang, Marci Green, Roy A. Scott, D. L. Hyten, and P. B. Cregan

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Identification and validation of quantitative trait loci for seed yield, oil and protein contents in two recombinant inbred line populations of soybean, Xianzhi Wang, Guo‑Liang Jiang, Marci Green, Roy A. Scott, Qijian Song, D. L. Hyten, and P. B. Cregan

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Transcriptomic and physiological characterization of the fefe mutant of melon (Cucumis melo) reveals new aspects of iron-copper crosstalk, Brian M. Waters, Samuel A. McInturf, and Keenan Amundsen

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Quantitative proteomic analysis of the Salmonella-lettuce interaction, Yuping Zhang, Renu Nandakumar, Shannon L. Bartelt-Hunt, Daniel D. Snow, Laurie Hodges, and Xu Li

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Phytophthora Root Rot Resistance in Soybean E00003, Zhongnan Zhang, Jianjun Hao, Jiazheng Yuan, Qijian Song, D. L. Hyten, P. B. Cregan, Guorong Zhang, Cuihua Gu, Ming Li, and Dechun Wang

2013

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DNA fingerprinting and anastomosis grouping reveal similar genetic diversity in Rhizoctonia species infecting turfgrasses in the transition zone of USA, B. S. Amaradasa, B. J. Horvath, D. K. Lakshman, and S. E. Warnke

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Mapping soybean aphid resistance genes in PI 567598B, Carmille Bales, Guorong Zhang, Menghan Liu, Clarice Mensah, Cuihua Gu, Qijian Song, D. L. Hyten, P. B. Cregan, and Dechun Wang

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Soybean Seed Amino Acid Content QTL Detected Using the Universal Soy Linkage Panel 1.0 with 1,536 SNPs, Benjamin D. Fallen, Catherine N. Hatcher, Fred L. Allen, Dean A. Kopsell, Arnold M. Saxton, Pengyin Chen, Stella K. Kantartzi, P. B. Cregan, D. L. Hyten, and Vincent R. Pantalone

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New technologies reduce greenhouse gas emissions from nitrogenous fertilizer in China, Wei-feng Feng, Zheng-xia Dou, Pan He, Xiao-Tang Ju, David Powlson, Dave Chadwick, David Norse, Yue-Lai Lu, Ying Zhang, Liang Wu, Xin-Ping Chen, Kenneth Cassman, and Fu-Suo Zhang

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The Essentials of Economic Sustainability by John Ikerd [Book Review], Charles A. Francis

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Food Webs and Food Sovereignty: Research Agenda for Sustainability, Charles A. Francis, Michelle Miller, Molly Anderson, Nancy Creamer, Michelle Wander, Jacob Park, Thomas Green, and Brent McCown

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Characterization of fluorescent Pseudomonas spp. associated with roots and soil of two sorghum genotypes, Deanna L. Funnell-Harris, Scott E. Sattler, and Jeffrey F. Pedersen

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Distinguishing between yield advances and yield plateaus in historical crop production trends, Patricio Grassini, Kent M. Eskridge, and Kenneth Cassman

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Complete plastid genomes from Ophioglossum californicum, Psilotum nudum, and Equisetum hyemale reveal an ancestral land plant genome structure and resolve the position of Equisetales among monilophytes, Felix Grewe, Wenhu Guo, Emily A. Gubbels, A Katie Hansen, and Jeffrey P. Mower

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Nutrient partitioning and grain yield of TaNAM-RNAi wheat under abiotic stress, Mary J. Guttieri, Ricardo J. Stein, and Brian M. Waters

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Identification and Characterization of Transcription Factors Regulating Arabidopsis HAK5, Jong-Pil Hong, Yoshizumi Takeshi, Youichi Kondou, Daniel P. Schachtman, Minami Matsui, and Ryoung Shin

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The Clubroot Pathogen (Plasmodiophora brassicae) Influences Auxin Signaling to Regulate Auxin Homeostasis in Arabidopsis, Linda Jahn, Stefanie Mucha, Sabine Bergmann, Cornelia Horn, Paul E. Staswick, Bianka Steffens, Johannes Siemens, and Jutta Ludwig-Müller

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Sorghum Transformation: Overview and Utility, Tejinder Kumar, Arlene Howe, Shirley Sato, Ismail M. Dweikat, and Tom E. Clemente

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The reduced mycorrhizal colonization (rmc) mutation of tomato disrupts five gene sequences including the CYCLOPS/IPD3 homologue, Nicholas J. Larkan, Dan R. Ruzicka, Tamara Edmonds-Tibbett, Jonathan M. H. Durkin, Louise E. Jackson, F. Andrew Smith, Daniel P. Schachtman, Sally E. Smith, and Susan J. Barker

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Resource Allocation for Maximizing Prediction Accuracy and Genetic Gain of Genomic Selection in Plant Breeding: A Simulation Experiment, Aaron Lorenz

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The Amino Acid Permeases AAP3 and AAP6 Are Involved in Root-Knot Nematode Parasitism of Arabidopsis, Heather H. Marella, Erik Nielsen, Daniel P. Schachtman, and Christopher G. Taylor

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Critical Research Needs for Successful Food Systems Adaptation to Climate Change, Michelle Miller, Molly Anderson, Charles A. Francis, Chad Kruger, Carol Barford, Jacob Park, and Brent H. McCown

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Enzyme activity in wheat breeding lines derived from matings of low polyphenol oxidase parents, Somrudee Nilthong, Robert A. Graybosch, and P. Stephen Baenziger

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The Challenges of Growing Strawberries in the Greenhouse, Ellen T. Paparozzi

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Genetic Mapping and Confirmation of Quantitative Trait Loci for Seed Protein and Oil Contents and Seed Weight in Soybean, Safiullah M. Pathan, Tri Vuong, Kerry Clark, Jeong-Dong Lee, J. Grover Shannon, Craig A. Roberts, Mark R. Ellersieck, Joseph W. Burton, P. B. Cregan, David L. Hyten, Henry T. Nguyen, and David A. Sleper

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Evaluation of Public Sweet Sorghum A-Lines for Use in Hybrid Production, Jeffrey F. Pedersen, Scott E. Sattler, and William F. Anderson

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Evaluation of Public Sweet Sorghum A-Lines for Use in Hybrid Production, Jeffrey F. Pedersen, Scott E. Sattler, and William F. Anderson

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Unleashing the potential of the root hair cell as a single plant cell type model in root systems biology, Zhenzhen Qiao and Marc Libault

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2013 Fall Seed Guide, Teshome Regassa, P. Stephen Baenziger, Greg Kruger, and Dipak Santra

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NEBRASKA VARIETY AND HYBRID TESTS: SPRING SEED GUIDE - 2014, Teshome Regassa, Dipak Santra, Charles A. Shapiro, Greg Kruger, and Bruce Anderson

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Genetic Dissection of Yield and Its Component Traits Using High-Density Composite Map of Wheat Chromosome 3A: Bridging Gaps between QTLs and Underlying Genes, Sachin Rustgi, Mustafa N. Shafqat, Neeraj Kumar, P. Stephen Baenziger, M. Liakat Ali, Ismail M. Dweikat, B. Todd Campbell, and Kulvinder Singh Gill

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Inside Arbuscular Mycorrhizal Roots – Molecular Probes to Understand the Symbiosis, Daniel R. Ruzicka, Srikar Chamala, Felipe H. Barrios-Masias, Francis Martin, Sally Smith, Louise E. Jackson, W. Brad Barbazuk, and Daniel P. Schachtman

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Erratum to: Identification and Characterization of Four Missense Mutations in Brown midrib12 (Bmr12), the Caffeic acid O-Methyltranferase (COMT) of Sorghum, Scott E. Sattler, Nathan A. Palmer, Ana Saballos, Ann M. Greene, Zhanguo Xin, Gautam Sarath, Wilfred Vermerris, and Jeffrey F. Pedersen

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Agricultural innovation to protect the environment, Jeffrey Sayer and Kenneth Cassman

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Remote estimation of nitrogen and chlorophyll contents in maize at leaf and canopy levels, Michael Schlemmer, Anatoly A. Gitelson, James S. Schepers, Richard B. Ferguson, Y. Peng, J. Shanahan, and Donald Rundquist

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Rate of Shattercane × Sorghum Hybridization In Situ, Jared J. Schmidt, Jeffrey F. Pedersen, Mark L. Bernards, and John L. Lindquist

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SUB1A-mediated submergence tolerance response in rice involves differential regulation of the brassinosteroid pathway, Aaron J. Schmitz, Jing J. Folsom, Yusuke Jikamaru, Pamela C. Ronald, and Harkamal Walia

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Soil sorptivity enhancement with crop residue accumulation in semiarid dryland no-till agroecosystems, T.M. Shaver, G. A. Peterson, Laj R. Ahuja, and D.G. Westfall

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Development and Evaluation of SoySNP50K, a High-Density Genotyping Array for Soybean, Qijian Song, D. L. Hyten, Gaofeng Jia, Charles V. Quigley, Edward W. Fickus, Randall L. Nelson, and P. B. Cregan

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The Plant Science Decadal Vision: Response to the Martin Commentary, David Stern and Sally Ann MacKenzie

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Indoor Application of Attractive Toxic Sugar Bait (ATSB) in Combination with Mosquito Nets for Control of Pyrethroid-Resistant Mosquitoes, Zachary P. Stewart, Richard M. Oxborough, Patrick K. Tungu, Matthew J. Kirby, Mark W. Rowland, and Seth R. Irish

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Immunodetection of Triticum mosaic virus by DAS- and DAC-ELISA using antibodies produced against coat protein expressed in Escherichia coli: Potential for high-throughput diagnostic methods, Satyanarayana Tatineni, Gautam Sarath, Dallas Seifers, and Roy C. French

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Arbuscular mycorrhizal fungi differ in their ability to regulate the expression of phosphate transporters in maize (Zea mays L.), Hui Tian, Rhae A. Drijber, Xiaolin Li, Daniel N. Miller, and Brian J. Wienhold

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Functional characterization of cinnamyl alcohol dehydrogenase and caffeic acid O-methyltransferase in Brachypodium distachyon, Gina M. Trabucco, Dominick A. Matos, Scott J. Lee, Aaron J. Saathoff, Henry D. Priest, Todd C. Mockler, Gautam Sarath, and Samuel P. Hazen

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Automated Conserved Non-Coding Sequence (CNS) Discovery Reveals Differences in Gene Content and Promoter Evolution among Grasses, Gina Marie Turco, James C. Schnable, Brent S. Pedersen, and Michael Freeling

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Refining thresholds in coupled fire–vegetation models to improve management of encroaching woody plants in grasslands, Dirac L. Twidwell Jr, Samuel D. Fuhlendorf, Charles A. Taylor Jr, and William E. Rogers

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Yield gap analysis with local to global relevance—A review, Martin K. van Ittersum, Kenneth Cassman, Patricio Grassini, Joost Wolf, Pablo Tittonell, and Zvi Hochman

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Yield gap analysis—Rationale, methods and applications—Introduction to the Special Issue, M.K. van Ittersum and Kenneth Cassman

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Estimating crop yield potential at regional to national scales, Justin van Wart, Kurt Christian Kersebaum, Shaobing Peng, Maribeth Milner, and Kenneth Cassman

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Use of agro-climatic zones to upscale simulated crop yield potential, Justin van Wart, Lenny G.J. van Bussel, Joost Wolf, Rachel Licker, Patricio Grassini, Andrew Nelson, Hendrik Boogaard, James Gerber, Nathaniel D. Mueller, Lieven Claessens, Martin K. van Ittersum, and Kenneth Cassman

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Transcriptome analysis of two buffalograss cultivars, Michael Wachholtz, Tiffany Heng-Moss, Paul Twigg, Lisa Baird, Guoqing Lu, and Keenan Amundsen

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Optimal copper supply is required for normal plant iron deficiency responses, Brian M. Waters and Laura C. Armbrust

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Chloroplast Division Protein ARC3 Regulates Chloroplast FtsZ-Ring Assembly and Positioning in Arabidopsis through Interaction with FtsZ2, Min Zhang, Aaron J. Schmitz, Deena K. Kadirjan-Kalbach, Allan D. TerBush, and Katherine W. Osteryoung

2012

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The ‘PI 438489B’ by ‘Hamilton’ SNP-Based Genetic Linkage Map of Soybean [Glycine max (L.) Merr.] Identified Quantitative Trait Loci that Underlie Seedling SDS Resistance, Kassem My Abdelmajid, Laura Ramos, Leonor Leandro, Gladys Mbofung, D. L. Hyten, Stella K. Kantartzi, Robert L. Grier IV, Victor N. Njiti, and Khalid Meksem

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Effectiveness of Grass Filters in Reducing Phosphorus and Sediment Runoff, Ahmed Al-wadaey, Charles S. Wortmann, Thomas G. Franti, Charles A. Shapiro, and Dean E. Eisenhauer

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Registration of ‘NI04421’ Hard Red Winter Wheat, P. Stephen Baenziger, Robert A. Graybosch, Teshome H. Regassa, Lenis Alton Nelson, Robert N. Klein, Dipak K. Santra, D. D. Baltensperger, J. M. Krall, Lei Xu, Stephen N. Wegulo, Y. Jin, J. Kolmer, Ming-Shun Chen, and Guihua Bai

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Registration of ‘NE01481’ Hard Red Winter Wheat, P. Stephen Baenziger, Robert A. Graybosch, Teshome H. Regassa, Lenis Alton Nelson, Robert N. Klein, Dipak K. Santra, D. D. Baltensperger, Lei Xu, Stephen N. Wegulo, Y. Jin, J. Kolmer, Ming-Shun Chen, and Guihua Bai

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Expected Economic Potential of Substituting Legumes for Nitrogen in Bermudagrass Pastures, Jon T. Biermacher; The Samuel Roberts Noble Foundation, Inc. Reuter; M.K. Kering; J.K. Rogers; J. Blanton Jr; John A. Guretzky; and T.J. Butler

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Agriculture and Food in Crisis: Conflict, Resistance, and Renewal [Book Review], Charles A. Francis

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Cultivating a Movement: Excerpts from an Oral History of Organic Farming and Sustainable Agriculture on California’s Central Coast [Book Review], Charles A. Francis

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High-yield maize with large net energy yield and small global warming intensity, Patricio Grassini and Kenneth Cassman

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An evaluation of MODIS 8- and 16-day composite products for monitoring maize green leaf area index, Noemi Guindin-Garcia, Anatoly A. Gitelson, Timothy J. Arkebauer, John Shanahan, and Albert Weiss

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Auxin Controls Arabidopsis Adventitious Root Initiation by Regulating Jasmonic Acid Homeostasis, Laurent Gutierrez, Gaëlle Mongelard, Kristýna Floková, Daniel I. Păcurar, Ondrej Novák, Paul E. Staswick, Mariusz Kowalczyk, Monica Păcurar, Gaia Geiss, and Catherine Bellini

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Managing Nitrogen and Phosphorus Nutrients for Switchgrass Produced for Bioenergy Feedstock in Phosphorus-Deficient Soil, Mohua Haque, Jon T. Biermacher, Maru Kering, and John A. Guretzky

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Advances in Genome Sequencing and Genotyping Technology for Soybean Diversity Analysis, David L. Hyten

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Biomass Yield and Nutrient Responses of Switchgrass to Phosphorus Application, M. K. Kering, J. T. Biermacher, T. J. Butler, J. Mosali, and John A. Guretzky

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Biomass Yield and Nutrient Removal Rates of Perennial Grasses under Nitrogen Fertilization, M. K. Kering, T. J. Butler, J. T. Biermacher, and John A. Guretzky

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Molecular mapping of soybean rust resistance in soybean accession PI 561356 and SNP haplotype analysis of the Rpp1 region in diverse germplasm, Ki-Seung Kim, Jair R. Unfried, D. L. Hyten, Reid D. Frederick, Glen L. Hartman, Randall L. Nelson, Qijian Song, and Brian W. Diers

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Identification of positive yield QTL alleles from exotic soybean germplasm in two backcross populations, K.-S. Kim, B. W. Diers, D. L. Hyten, M. A. Rouf Mian, J. G. Shannon, and R. L. Nelson

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Modulation of kernel storage proteins in grain sorghum (Sorghum bicolor (L.) Moench), Tejinder Kumar, Ismail M. Dweikat, Shirley Sato, Zhengxiang Ge, Natalya Nersesian, Han Chen, Thomas Elthon, Scott Bean, Brian P. Ioerger, Mike Tilley, and Thomas E. Clemente

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Estimating Construction Costs for a Low-Cost Quonset-style Greenhouse, David P. Lambe, Stacy A. Adams, and Ellen T. Paparozzi

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Marketing Contracts, Overconfidence, and Timing in the Canadian Wheat Market, Fabio L. Mattos and Stefanie A. Fryza

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Structural Variants in the Soybean Genome Localize to Clusters of Biotic Stress-Response Genes, Leah K. McHale, William J. Haun, Wayne W. Xu, Pudota B. Bhaskar, Justin E. Anderson, D. L. Hyten, Daniel J. Gerhardt, Jeffrey A. Jeddeloh, and Robert M. Stupar

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An Investigation of Reflective Mulches for use over Capillary Mat Systems for Winter-time Greenhouse Strawberry Production, George E. Meyer, Ellen T. Paparozzi, Elizabeth Walter-Shea, Erin E. Blankenship, and Stacy A. Adams

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Switchgrass Harvest and Storage, Robert B. Mitchell and Marty R. Schmer

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Inheritance of grain polyphenol oxidase (PPO) activity in multiple wheat (Triticum aestivum L.) genetic backgrounds, Somrudee Nilthong, Robert A. Graybosch, and P. Stephen Baenziger

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Inheritance of grain polyphenol oxidase (PPO) activity in multiple wheat (Triticum aestivum L.) genetic backgrounds, Somrudee Nilthong, Robert A. Graybosch, and P. Stephen Baenziger

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The Return Of Capillary Mats, Ellen T. Paparozzi and George E. Meyer

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Greenhouse Production of Strawberries During the Winter, Ellen T. Paparozzi, George E. Meyer, Stacy A. Adams, M. Elizabeth Conley, Benjamin A. Loseke, and Paul E. Read

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Brown midrib2 (Bmr2) encodes the major 4-coumarate: coenzyme A ligase involved in lignin biosynthesis in sorghum (Sorghum bicolor (L.) Moench), Ana Saballos, Scott Sattler, Emiliano Sanchez, Timothy P. Foster, Zhanguo Xin, ChulHee Kang, Jeffrey F. Pedersen, and Wilfred Vermerris

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Crop Management of Switchgrass, Matt A. Sanderson, Marty R. Schmer, Vance Owens, Pat Keyser, and Wolter Elbersen

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Identification and Characterization of Four Missense Mutations in Brown midrib 12 (Bmr12), the Caffeic O-Methyltranferase (COMT) of Sorghum, Scott E. Sattler, Nathan A. Palmer, Ana Saballos, Ann M. Greene, Zhanguo Xin, Gautam Sarath, Wilfred Vermerris, and Jeffrey F. Pedersen

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Genome-Wide Analysis of Syntenic Gene Deletion in the Grasses, James C. Schnable, Michael Freeling, and Eric Lyons

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Escape from Preferential Retention following Repeated Whole Genome Duplications in Plants, James C. Schnable, Xiaowu Wang, J. Chris Pires, and Michael Freeling

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2011 Vadose Zone Nitrate Study at Hastings, NE (Revised), Roy F. Spalding and Martin Toavs

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Quantitative trait locus analysis of saturated fatty acids in a population of recombinant inbred lines of soybean, Xianzhi Wang, Guo-Liang Jiang, Marci Green, Roy A. Scott, D. L. Hyten, and P. B. Cregan

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Rosette Iron Deficiency Transcript and MicroRNA Profiling Reveals Links between Copper and Iron Homeostasis in Arabidopsis thaliana, Brian M. Waters, Samuel A. McInturf, and Ricardo J. Stein

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Natural variation in iron use efficiency and mineral remobilization in cucumber (Cucumis sativus), Brian M. Waters and Grace Troupe

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Composting Manure and Other Organic Materials, Charles S. Wortmann and Charles A. Shapiro

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Local Conditions, Not Regional Gradients, Drive Demographic Variation of Giant Ragweed (Ambrosia trifida) and Common Sunflower (Helianthus annuus) Across Northern U.S. Maize Belt, Samuel E. Wortman, Adam Davis, Brian J. Schutte, John L. Lindquist, John Cardina, Joel Felix, Christy L. Sprague, J. Anita Dille, Analiza H. M. Ramirez, Graig Reicks, and Sharon A. Clay

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Optimizing Cover Crop Benefits with Diverse Mixtures and an Alternative Termination Method, Samuel E. Wortman, Charles A. Francis, Mark L. Bernards, Rhae A. Drijber, and John L. Lindquist

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Cover Crop Mixtures for the Western Corn Belt: Opportunities for Increased Productivity and Stability, Samuel E. Wortman, Charles A. Francis, and John L. Lindquist